Initializing AMReX (24.06-21-g259db7cfb99e)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-21-g259db7cfb99e) initialized Starting run at 05:27:30 UTC on 2024-06-25. Successfully read inputs file ... Castro git describe: 24.06-24-g9eb8f82be AMReX git describe: 24.06-21-g259db7cfb Microphysics git describe: 24.06-32-ge27c00f6 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014201399 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359851553 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.360756247 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329545995 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327944954 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.380747873 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315254245 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.321919768 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.327102491 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316722187 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31644666 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007870331 seconds Ending run at 05:27:33 UTC on 2024-06-25. Run time = 3.562356619 Run time without initialization = 3.369007128 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.562 ... 3.562 ... 3.562 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3596 2.3839 2.4116 67.70% Gravity::make_radial_gravity() 21 0.2979 0.3094 0.3313 9.30% Castro::initData() 1 0.04939 0.08848 0.1306 3.67% check_for_negative_density() 10 0.06743 0.09523 0.1217 3.42% Castro::estTimeStep() 21 0.03223 0.0777 0.1189 3.34% FabArray::ParallelCopy_finish() 41 0.04502 0.05924 0.1001 2.81% amrex::Copy() 193 0.06094 0.0782 0.08786 2.47% FabArray::setVal() 143 0.05233 0.06672 0.07415 2.08% FabArray::ParallelCopy_nowait() 41 0.03369 0.04053 0.0496 1.39% Castro::reset_internal_energy(Fab) 1008 0.04366 0.04631 0.04904 1.38% Castro::normalize_species() 62 0.0414 0.04293 0.0457 1.28% StateData::FillBoundary(geom) 41 0.02958 0.03286 0.03964 1.11% FillPatchIterator::Initialize 41 0.02635 0.03114 0.03308 0.93% Gravity::interpolate_monopole_grav() 21 0.02746 0.0291 0.03027 0.85% Castro::construct_new_gravity_source() 10 0.02282 0.02401 0.02818 0.79% Castro::computeTemp() 63 0.01794 0.01927 0.02071 0.58% Castro::initialize_do_advance() 10 0.0113 0.01571 0.01712 0.48% MultiFab::contains_nan() 20 0.01029 0.01175 0.01405 0.39% Castro::initialize_advance() 10 0.005309 0.01057 0.01323 0.37% FabArray::Saxpy() 20 0.01046 0.01196 0.01303 0.37% Amr::writePlotFile() 2 0.007707 0.01024 0.01226 0.34% VisMF::Write(FabArray) 2 0.008715 0.009467 0.01195 0.34% FabArray::setDomainBndry() 41 0.006854 0.009582 0.01151 0.32% Castro::construct_old_gravity_source() 10 0.00652 0.008818 0.009412 0.26% Castro::enforce_min_density() 62 0.007037 0.007267 0.007539 0.21% Castro::construct_new_source() 50 0.005668 0.006298 0.006989 0.20% main() 1 0.003464 0.003785 0.004064 0.11% Amr::coarseTimeStep() 10 0.001364 0.00307 0.004045 0.11% Gravity::get_new_grav_vector() 11 0.002528 0.003249 0.003679 0.10% Gravity::get_old_grav_vector() 10 0.001445 0.00196 0.002517 0.07% Castro::finalize_do_advance() 10 0.0004459 0.0008735 0.001102 0.03% AmrLevel::FillPatch() 41 0.0006721 0.0009695 0.001065 0.03% Amr::timeStep() 10 0.0001651 0.0002215 0.0004363 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002868 0.0003043 0.0003255 0.01% Castro::do_advance_ctu() 10 0.0001375 0.000161 0.0001904 0.01% Castro::clean_state() 62 0.0001393 0.0001626 0.0001748 0.00% StateDataPhysBCFunct::() 41 9.25e-05 0.0001237 0.0001553 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001066 0.0001202 0.0001418 0.00% Castro::Castro() 1 7.167e-05 0.0001034 0.0001214 0.00% FabArray::ParallelCopy() 41 8.126e-05 9.575e-05 0.0001179 0.00% Castro::do_old_sources() 10 6.595e-05 8.366e-05 0.0001005 0.00% Amr::FinalizeInit() 1 3.823e-06 1.556e-05 9.255e-05 0.00% FillPatchSingleLevel 41 6.798e-05 7.653e-05 9.201e-05 0.00% Castro::construct_old_source() 50 5.688e-05 6.983e-05 8.151e-05 0.00% Castro::do_new_sources() 10 5.469e-05 6.301e-05 6.909e-05 0.00% Castro::construct_old_gravity() 10 3.54e-05 4.39e-05 6.852e-05 0.00% Castro::apply_source_to_state() 20 3.463e-05 4.476e-05 5.665e-05 0.00% Castro::subcycle_advance_ctu() 10 4.284e-05 4.577e-05 5.308e-05 0.00% Amr::defBaseLevel() 1 3.109e-05 4.113e-05 4.856e-05 0.00% Castro::advance() 10 3.921e-05 4.354e-05 4.842e-05 0.00% Castro::construct_new_gravity() 10 2.774e-05 3.453e-05 4.04e-05 0.00% Castro::check_for_nan() 20 2.374e-05 2.702e-05 3.441e-05 0.00% Castro::expand_state() 10 1.824e-05 2.229e-05 2.959e-05 0.00% Castro::post_timestep() 10 1.666e-05 1.862e-05 2.526e-05 0.00% Castro::post_init() 1 7.347e-06 1.009e-05 1.376e-05 0.00% Castro::computeNewDt() 9 7.568e-06 8.909e-06 1.326e-05 0.00% Amr::initialInit() 1 1.448e-06 2.792e-06 9.802e-06 0.00% Amr::InitializeInit() 1 2.798e-06 4.079e-06 6.137e-06 0.00% Castro::computeInitialDt() 2 3.192e-06 3.848e-06 5.107e-06 0.00% Amr::init() 1 2.002e-06 2.214e-06 2.488e-06 0.00% Other 200 0.0167 0.01959 0.021 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.562 3.562 3.562 100.00% Amr::coarseTimeStep() 10 3.357 3.357 3.357 94.24% Amr::timeStep() 10 3.342 3.343 3.345 93.89% Castro::advance() 10 3.326 3.327 3.327 93.40% Castro::subcycle_advance_ctu() 10 3.251 3.255 3.269 91.77% Castro::do_advance_ctu() 10 3.251 3.255 3.269 91.77% Castro::construct_ctu_hydro_source() 10 2.497 2.5 2.502 70.22% Gravity::make_radial_gravity() 21 0.3119 0.3245 0.3435 9.64% AmrLevel::FillPatch() 41 0.1964 0.2074 0.2208 6.20% Gravity::get_new_grav_vector() 11 0.2123 0.2128 0.2134 5.99% Castro::construct_old_gravity() 10 0.1848 0.1954 0.2123 5.96% Gravity::get_old_grav_vector() 10 0.1837 0.1945 0.2116 5.94% FillPatchIterator::Initialize 41 0.1642 0.1739 0.197 5.53% Amr::init() 1 0.1926 0.1928 0.1928 5.41% Castro::construct_new_gravity() 10 0.1894 0.1901 0.1908 5.36% Castro::initialize_do_advance() 10 0.167 0.1736 0.1798 5.05% Amr::initialInit() 1 0.178 0.1784 0.1786 5.01% FillPatchIterator::FillFromLevel0() 41 0.121 0.1331 0.1638 4.60% FillPatchSingleLevel 41 0.1209 0.133 0.1637 4.60% Amr::InitializeInit() 1 0.07112 0.1098 0.1521 4.27% Amr::defBaseLevel() 1 0.07112 0.1098 0.1521 4.27% Castro::initData() 1 0.05339 0.09226 0.1344 3.77% FabArray::ParallelCopy() 41 0.08824 0.09996 0.134 3.76% Castro::expand_state() 10 0.1079 0.1197 0.1245 3.49% check_for_negative_density() 10 0.06743 0.09523 0.1217 3.42% Castro::clean_state() 62 0.1103 0.1154 0.121 3.40% Castro::estTimeStep() 21 0.03223 0.0777 0.1189 3.34% Amr::FinalizeInit() 1 0.02637 0.06862 0.1075 3.02% FabArray::ParallelCopy_finish() 41 0.04502 0.05924 0.1001 2.81% Castro::do_old_sources() 10 0.09136 0.0944 0.09774 2.74% amrex::Copy() 193 0.06094 0.0782 0.08786 2.47% Castro::computeInitialDt() 2 0.002272 0.04449 0.08322 2.34% FabArray::setVal() 143 0.05233 0.06672 0.07415 2.08% Castro::initialize_advance() 10 0.05376 0.06811 0.0732 2.05% Castro::do_new_sources() 10 0.05869 0.06276 0.07161 2.01% Castro::computeTemp() 63 0.06188 0.06588 0.07008 1.97% FabArray::ParallelCopy_nowait() 41 0.03378 0.04062 0.04969 1.39% Castro::reset_internal_energy(MultiFab) 63 0.04394 0.04661 0.04936 1.39% Castro::reset_internal_energy(Fab) 1008 0.04366 0.04631 0.04904 1.38% Castro::normalize_species() 62 0.0414 0.04293 0.0457 1.28% StateDataPhysBCFunct::() 41 0.02967 0.03299 0.03977 1.12% StateData::FillBoundary(geom) 41 0.02958 0.03286 0.03964 1.11% Castro::construct_new_source() 50 0.02849 0.0303 0.03516 0.99% Gravity::interpolate_monopole_grav() 21 0.02746 0.0291 0.03027 0.85% Castro::finalize_do_advance() 10 0.01396 0.02412 0.02821 0.79% Castro::construct_new_gravity_source() 10 0.02282 0.02401 0.02818 0.79% Castro::post_init() 1 0.02334 0.02369 0.02386 0.67% Amr::writePlotFile() 2 0.02214 0.02228 0.02268 0.64% Castro::post_timestep() 10 0.01499 0.01586 0.01726 0.48% Castro::check_for_nan() 20 0.01031 0.01177 0.01408 0.40% MultiFab::contains_nan() 20 0.01029 0.01175 0.01405 0.39% Castro::apply_source_to_state() 20 0.01049 0.01201 0.01308 0.37% FabArray::Saxpy() 20 0.01046 0.01196 0.01303 0.37% Castro::Castro() 1 0.009107 0.01134 0.01198 0.34% VisMF::Write(FabArray) 2 0.008715 0.009467 0.01195 0.34% FabArray::setDomainBndry() 41 0.006854 0.009582 0.01151 0.32% Castro::computeNewDt() 9 0.00997 0.009978 0.009984 0.28% Castro::construct_old_source() 50 0.006576 0.008887 0.009487 0.27% Castro::construct_old_gravity_source() 10 0.00652 0.008818 0.009412 0.26% Castro::enforce_min_density() 62 0.007037 0.007267 0.007539 0.21% Other 200 0.02663 0.03057 0.0326 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 41 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-21-g259db7cfb99e) finalized