Initializing AMReX (24.06-23-g463bdf493cd7)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-23-g463bdf493cd7) initialized Starting run at 05:23:31 UTC on 2024-06-26. Successfully read inputs file ... Castro git describe: 24.06-26-gf5c90c0ba AMReX git describe: 24.06-23-g463bdf493 Microphysics git describe: 24.06-33-g90adb0f9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016062662 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373830199 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.395468198 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.396983196 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.426376468 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.397422519 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.39833455 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.399514358 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.402187679 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.402107912 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.404966386 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.066403906 seconds Ending run at 05:23:36 UTC on 2024-06-26. Run time = 4.260115134 Run time without initialization = 4.071550542 Average number of zones advanced per microsecond: 0.644 Average number of zones advanced per microsecond per rank: 0.080 TinyProfiler total time across processes [min...avg...max]: 4.258 ... 4.259 ... 4.26 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5743 2.7604 2.9576 69.42% check_for_negative_density() 10 0.01654 0.2172 0.4059 9.53% Gravity::make_radial_gravity() 21 0.288 0.3022 0.3189 7.49% Castro::initData() 1 0.05296 0.08718 0.1234 2.90% amrex::Copy() 193 0.0958 0.1076 0.1206 2.83% Castro::estTimeStep() 21 0.02989 0.06692 0.108 2.53% FabArray::setVal() 143 0.08784 0.09672 0.1069 2.51% FabArray::ParallelCopy_finish() 41 0.04769 0.06151 0.07351 1.73% Amr::writePlotFile() 2 0.06366 0.06687 0.06821 1.60% FabArray::ParallelCopy_nowait() 41 0.05402 0.05739 0.0597 1.40% FillPatchIterator::Initialize 41 0.045 0.05009 0.05545 1.30% Castro::reset_internal_energy(Fab) 1008 0.04801 0.05018 0.05177 1.22% Castro::normalize_species() 62 0.04197 0.04302 0.04423 1.04% StateData::FillBoundary(geom) 41 0.03507 0.03826 0.04101 0.96% Castro::construct_new_gravity_source() 10 0.02833 0.03089 0.03324 0.78% Gravity::interpolate_monopole_grav() 21 0.02703 0.02884 0.02969 0.70% Castro::initialize_do_advance() 10 0.02098 0.02241 0.02346 0.55% Castro::computeTemp() 63 0.02051 0.02101 0.02164 0.51% FabArray::setDomainBndry() 41 0.0158 0.01918 0.02101 0.49% FabArray::Saxpy() 20 0.01717 0.01846 0.0197 0.46% Castro::initialize_advance() 10 0.01426 0.01533 0.01658 0.39% VisMF::Write(FabArray) 2 0.01001 0.01137 0.01535 0.36% MultiFab::contains_nan() 20 0.01009 0.01351 0.0151 0.35% Castro::construct_old_gravity_source() 10 0.01406 0.01447 0.01496 0.35% Castro::construct_new_source() 50 0.00768 0.008337 0.008992 0.21% Castro::enforce_min_density() 62 0.007675 0.008183 0.008543 0.20% main() 1 0.005243 0.006504 0.007243 0.17% Gravity::get_new_grav_vector() 11 0.00422 0.005198 0.005899 0.14% Amr::coarseTimeStep() 10 0.001062 0.002546 0.003856 0.09% Gravity::get_old_grav_vector() 10 0.002562 0.002838 0.003073 0.07% Castro::finalize_do_advance() 10 0.001143 0.001331 0.001911 0.04% AmrLevel::FillPatch() 41 0.00096 0.001083 0.001166 0.03% Amr::timeStep() 10 0.0001673 0.0002341 0.0003791 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003204 0.000336 0.0003596 0.01% Castro::do_advance_ctu() 10 0.0001615 0.000194 0.0002568 0.01% Castro::clean_state() 62 0.0001834 0.0002062 0.0002246 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001358 0.0001545 0.0001734 0.00% StateDataPhysBCFunct::() 41 0.0001068 0.0001306 0.0001629 0.00% Castro::do_old_sources() 10 9.503e-05 0.0001233 0.0001496 0.00% FabArray::ParallelCopy() 41 0.0001028 0.000113 0.0001314 0.00% Castro::construct_old_source() 50 8.568e-05 0.0001039 0.0001179 0.00% Castro::do_new_sources() 10 6.521e-05 8.365e-05 0.0001111 0.00% FillPatchSingleLevel 41 8.384e-05 9.499e-05 0.0001004 0.00% Castro::Castro() 1 7.514e-05 8.75e-05 9.68e-05 0.00% Castro::apply_source_to_state() 20 5.239e-05 6.448e-05 7.607e-05 0.00% Castro::subcycle_advance_ctu() 10 4.82e-05 6.313e-05 7.327e-05 0.00% Amr::FinalizeInit() 1 3.512e-06 1.265e-05 7.291e-05 0.00% Castro::advance() 10 3.965e-05 5.557e-05 6.309e-05 0.00% Castro::construct_old_gravity() 10 4.011e-05 4.568e-05 5.379e-05 0.00% Castro::construct_new_gravity() 10 3.126e-05 3.836e-05 5.012e-05 0.00% Castro::expand_state() 10 2.25e-05 3.496e-05 4.111e-05 0.00% Amr::defBaseLevel() 1 3.149e-05 3.563e-05 3.858e-05 0.00% Castro::check_for_nan() 20 2.388e-05 2.878e-05 3.722e-05 0.00% Castro::post_timestep() 10 1.794e-05 2.041e-05 2.358e-05 0.00% Castro::post_init() 1 8.467e-06 9.942e-06 1.272e-05 0.00% Castro::computeNewDt() 9 7.847e-06 9.281e-06 1.194e-05 0.00% Amr::initialInit() 1 1.325e-06 3.593e-06 8.896e-06 0.00% Amr::init() 1 1.707e-06 3.234e-06 8.685e-06 0.00% Amr::InitializeInit() 1 2.73e-06 3.359e-06 6.208e-06 0.00% Castro::computeInitialDt() 2 3.379e-06 3.821e-06 4.231e-06 0.00% Other 200 0.01707 0.02016 0.02195 0.52% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.258 4.259 4.26 100.00% Amr::coarseTimeStep() 10 3.998 3.998 3.998 93.85% Amr::timeStep() 10 3.983 3.984 3.986 93.56% Castro::advance() 10 3.967 3.968 3.969 93.17% Castro::subcycle_advance_ctu() 10 3.86 3.868 3.873 90.90% Castro::do_advance_ctu() 10 3.86 3.868 3.873 90.90% Castro::construct_ctu_hydro_source() 10 2.997 3 3.004 70.51% check_for_negative_density() 10 0.01654 0.2172 0.4059 9.53% Gravity::make_radial_gravity() 21 0.3094 0.3235 0.3403 7.99% AmrLevel::FillPatch() 41 0.2629 0.2721 0.2832 6.65% FillPatchIterator::Initialize 41 0.2179 0.227 0.2362 5.54% Castro::initialize_do_advance() 10 0.2092 0.2195 0.2275 5.34% Gravity::get_new_grav_vector() 11 0.2252 0.2258 0.2264 5.31% Castro::construct_old_gravity() 10 0.1873 0.1968 0.2105 4.94% Gravity::get_old_grav_vector() 10 0.1863 0.1959 0.2098 4.92% Castro::construct_new_gravity() 10 0.2028 0.2034 0.204 4.79% Amr::init() 1 0.1878 0.188 0.188 4.41% Amr::initialInit() 1 0.1715 0.172 0.1721 4.04% FillPatchIterator::FillFromLevel0() 41 0.1445 0.1578 0.1653 3.88% FillPatchSingleLevel 41 0.1443 0.1576 0.1651 3.88% Castro::expand_state() 10 0.1449 0.1546 0.163 3.83% Amr::InitializeInit() 1 0.07272 0.1084 0.1455 3.42% Amr::defBaseLevel() 1 0.07272 0.1084 0.1455 3.42% Castro::do_old_sources() 10 0.1286 0.1295 0.1307 3.07% FabArray::ParallelCopy() 41 0.1067 0.1191 0.1278 3.00% Castro::initData() 1 0.05691 0.09102 0.1269 2.98% Castro::clean_state() 62 0.1191 0.122 0.1247 2.93% amrex::Copy() 193 0.0958 0.1076 0.1206 2.83% Castro::estTimeStep() 21 0.02989 0.06692 0.108 2.53% FabArray::setVal() 143 0.08784 0.09672 0.1069 2.51% Castro::initialize_advance() 10 0.09086 0.09586 0.1035 2.43% Amr::FinalizeInit() 1 0.02647 0.06358 0.09935 2.33% Castro::do_new_sources() 10 0.07385 0.07901 0.08434 1.98% Amr::writePlotFile() 2 0.08243 0.08251 0.08277 1.94% Castro::computeInitialDt() 2 0.002229 0.03936 0.07509 1.76% Castro::computeTemp() 63 0.06886 0.07153 0.07365 1.73% FabArray::ParallelCopy_finish() 41 0.04769 0.06151 0.07351 1.73% FabArray::ParallelCopy_nowait() 41 0.05416 0.05751 0.05983 1.40% Castro::reset_internal_energy(MultiFab) 63 0.04834 0.05052 0.05211 1.22% Castro::reset_internal_energy(Fab) 1008 0.04801 0.05018 0.05177 1.22% Castro::normalize_species() 62 0.04197 0.04302 0.04423 1.04% Castro::construct_new_source() 50 0.03601 0.03922 0.04218 0.99% StateDataPhysBCFunct::() 41 0.03519 0.03839 0.04114 0.97% StateData::FillBoundary(geom) 41 0.03507 0.03826 0.04101 0.96% Castro::construct_new_gravity_source() 10 0.02833 0.03089 0.03324 0.78% Gravity::interpolate_monopole_grav() 21 0.02703 0.02884 0.02969 0.70% Castro::finalize_do_advance() 10 0.01269 0.01905 0.02552 0.60% Castro::post_init() 1 0.02356 0.02373 0.02382 0.56% FabArray::setDomainBndry() 41 0.0158 0.01918 0.02101 0.49% Castro::apply_source_to_state() 20 0.01722 0.01852 0.01977 0.46% FabArray::Saxpy() 20 0.01717 0.01846 0.0197 0.46% Castro::post_timestep() 10 0.01541 0.01586 0.01641 0.39% VisMF::Write(FabArray) 2 0.01001 0.01137 0.01535 0.36% Castro::check_for_nan() 20 0.01011 0.01354 0.01514 0.36% MultiFab::contains_nan() 20 0.01009 0.01351 0.0151 0.35% Castro::construct_old_source() 50 0.01417 0.01458 0.01508 0.35% Castro::construct_old_gravity_source() 10 0.01406 0.01447 0.01496 0.35% Castro::Castro() 1 0.009933 0.0111 0.01206 0.28% Castro::computeNewDt() 9 0.009815 0.009854 0.009884 0.23% Castro::enforce_min_density() 62 0.007675 0.008183 0.008543 0.20% Other 200 0.028 0.0327 0.03544 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 32 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-23-g463bdf493cd7) finalized