Initializing AMReX (24.06-24-g2f93525639da)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-24-g2f93525639da) initialized Starting run at 05:20:51 UTC on 2024-06-27. Successfully read inputs file ... Castro git describe: 24.06-26-gf5c90c0ba AMReX git describe: 24.06-24-g2f9352563 Microphysics git describe: 24.06-35-g6734dabf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014971979 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.376445859 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349929124 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33863421 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.365502573 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362116028 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.327398056 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315382898 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315183156 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316208933 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315696033 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007578452 seconds Ending run at 05:20:54 UTC on 2024-06-27. Run time = 3.58838951 Run time without initialization = 3.39497165 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.588 ... 3.588 ... 3.589 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2995 2.3939 2.4591 68.53% Gravity::make_radial_gravity() 21 0.2946 0.3018 0.313 8.72% check_for_negative_density() 10 0.0264 0.09247 0.1889 5.27% Castro::initData() 1 0.04892 0.0933 0.1289 3.59% Castro::estTimeStep() 21 0.02481 0.06875 0.1164 3.24% amrex::Copy() 193 0.07335 0.08067 0.08874 2.47% FabArray::setVal() 143 0.06567 0.07374 0.08303 2.31% FabArray::ParallelCopy_finish() 41 0.04205 0.06346 0.07414 2.07% Castro::reset_internal_energy(Fab) 1008 0.04601 0.04758 0.04893 1.36% Castro::normalize_species() 62 0.04233 0.04456 0.04834 1.35% FabArray::ParallelCopy_nowait() 41 0.03761 0.04127 0.04447 1.24% FillPatchIterator::Initialize 41 0.02912 0.03412 0.03794 1.06% StateData::FillBoundary(geom) 41 0.02939 0.0329 0.03534 0.98% Gravity::interpolate_monopole_grav() 21 0.02866 0.02968 0.03085 0.86% Castro::construct_new_gravity_source() 10 0.0228 0.02512 0.02812 0.78% Castro::computeTemp() 63 0.01919 0.0205 0.02218 0.62% Castro::initialize_do_advance() 10 0.01406 0.0177 0.02173 0.61% FabArray::Saxpy() 20 0.01125 0.01269 0.01421 0.40% Castro::initialize_advance() 10 0.009531 0.01133 0.013 0.36% FabArray::setDomainBndry() 41 0.007876 0.01075 0.0125 0.35% VisMF::Write(FabArray) 2 0.009226 0.009767 0.01222 0.34% MultiFab::contains_nan() 20 0.009539 0.01022 0.01119 0.31% Amr::writePlotFile() 2 0.007715 0.009924 0.01043 0.29% Castro::construct_old_gravity_source() 10 0.007908 0.00916 0.009701 0.27% Amr::coarseTimeStep() 10 0.002667 0.006697 0.008212 0.23% Castro::initMFs() 1 0.006485 0.006945 0.007729 0.22% Castro::construct_new_source() 50 0.006021 0.006285 0.006524 0.18% main() 1 0.003302 0.003837 0.004057 0.11% Gravity::get_new_grav_vector() 11 0.003044 0.00348 0.003905 0.11% Gravity::get_old_grav_vector() 10 0.001649 0.002037 0.002402 0.07% Castro::finalize_do_advance() 10 0.0004307 0.0009111 0.001088 0.03% AmrLevel::FillPatch() 41 0.0007514 0.0008569 0.0009467 0.03% Amr::timeStep() 10 0.0001759 0.0002302 0.0004498 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002933 0.0003071 0.0003225 0.01% Castro::do_advance_ctu() 10 0.0001376 0.0001712 0.0002616 0.01% Castro::clean_state() 62 0.0001461 0.0001651 0.0001738 0.00% StateDataPhysBCFunct::() 41 0.0001121 0.0001315 0.0001528 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001092 0.0001202 0.0001418 0.00% FabArray::ParallelCopy() 41 9.197e-05 0.0001014 0.0001184 0.00% Castro::do_old_sources() 10 7.305e-05 9.36e-05 0.000117 0.00% Castro::Castro() 1 6.792e-05 8.726e-05 0.0001 0.00% Castro::construct_old_source() 50 6.078e-05 7.81e-05 9.783e-05 0.00% Amr::FinalizeInit() 1 3.855e-06 1.618e-05 9.526e-05 0.00% FillPatchSingleLevel 41 6.841e-05 8.163e-05 9.394e-05 0.00% Castro::do_new_sources() 10 5.255e-05 6.449e-05 7.152e-05 0.00% Castro::subcycle_advance_ctu() 10 3.891e-05 5.49e-05 6.886e-05 0.00% Castro::apply_source_to_state() 20 3.501e-05 4.451e-05 5.777e-05 0.00% Castro::advance() 10 4.322e-05 4.674e-05 5.265e-05 0.00% Castro::construct_old_gravity() 10 3.104e-05 3.73e-05 4.743e-05 0.00% Amr::defBaseLevel() 1 3.014e-05 3.802e-05 4.389e-05 0.00% Castro::construct_new_gravity() 10 2.84e-05 3.399e-05 4.175e-05 0.00% Castro::check_for_nan() 20 1.98e-05 2.563e-05 3.985e-05 0.00% Castro::expand_state() 10 1.882e-05 2.438e-05 2.906e-05 0.00% Castro::post_timestep() 10 1.73e-05 2.213e-05 2.688e-05 0.00% Castro::post_init() 1 9.047e-06 1.059e-05 1.339e-05 0.00% Castro::computeNewDt() 9 7.523e-06 8.58e-06 1.091e-05 0.00% Amr::initialInit() 1 1.389e-06 3.067e-06 9.962e-06 0.00% Amr::InitializeInit() 1 2.572e-06 3.532e-06 6.615e-06 0.00% Castro::computeInitialDt() 2 3.202e-06 4.224e-06 5.537e-06 0.00% Amr::init() 1 2.006e-06 2.606e-06 4.195e-06 0.00% Other 261 0.01781 0.01989 0.02139 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.588 3.588 3.588 100.00% Amr::coarseTimeStep() 10 3.383 3.383 3.383 94.29% Amr::timeStep() 10 3.365 3.366 3.37 93.92% Castro::advance() 10 3.349 3.349 3.351 93.37% Castro::subcycle_advance_ctu() 10 3.264 3.27 3.276 91.29% Castro::do_advance_ctu() 10 3.264 3.27 3.276 91.29% Castro::construct_ctu_hydro_source() 10 2.504 2.508 2.512 69.99% Gravity::make_radial_gravity() 21 0.3105 0.3182 0.328 9.14% AmrLevel::FillPatch() 41 0.2 0.2162 0.2333 6.50% Gravity::get_new_grav_vector() 11 0.2169 0.2206 0.2241 6.25% Castro::construct_new_gravity() 10 0.1928 0.196 0.199 5.54% Castro::construct_old_gravity() 10 0.1846 0.1906 0.1989 5.54% Gravity::get_old_grav_vector() 10 0.1839 0.1897 0.1979 5.51% FillPatchIterator::Initialize 41 0.1668 0.183 0.1974 5.50% Amr::init() 1 0.1927 0.1929 0.1929 5.38% check_for_negative_density() 10 0.0264 0.09247 0.1889 5.27% Castro::initialize_do_advance() 10 0.1583 0.1727 0.1831 5.10% Amr::initialInit() 1 0.1775 0.1779 0.178 4.96% FillPatchIterator::FillFromLevel0() 41 0.1183 0.1382 0.151 4.21% FillPatchSingleLevel 41 0.1182 0.138 0.1508 4.20% Amr::InitializeInit() 1 0.06935 0.1142 0.1494 4.16% Amr::defBaseLevel() 1 0.06934 0.1142 0.1494 4.16% Castro::initData() 1 0.0533 0.09743 0.1332 3.71% Castro::expand_state() 10 0.1082 0.1188 0.13 3.62% Castro::clean_state() 62 0.1153 0.1195 0.1258 3.51% Castro::estTimeStep() 21 0.02481 0.06875 0.1164 3.24% FabArray::ParallelCopy() 41 0.0833 0.1049 0.1161 3.24% Amr::FinalizeInit() 1 0.02855 0.06371 0.1087 3.03% Castro::do_old_sources() 10 0.09354 0.09639 0.09983 2.78% amrex::Copy() 193 0.07335 0.08067 0.08874 2.47% FabArray::setVal() 143 0.06567 0.07374 0.08303 2.31% Castro::computeInitialDt() 2 0.002355 0.03754 0.08243 2.30% Castro::initialize_advance() 10 0.06936 0.07535 0.08163 2.27% Castro::do_new_sources() 10 0.06216 0.06772 0.07506 2.09% FabArray::ParallelCopy_finish() 41 0.04205 0.06346 0.07414 2.07% Castro::computeTemp() 63 0.06549 0.06838 0.07107 1.98% Castro::reset_internal_energy(MultiFab) 63 0.0463 0.04788 0.04924 1.37% Castro::reset_internal_energy(Fab) 1008 0.04601 0.04758 0.04893 1.36% Castro::normalize_species() 62 0.04233 0.04456 0.04834 1.35% FabArray::ParallelCopy_nowait() 41 0.03771 0.04136 0.04455 1.24% StateDataPhysBCFunct::() 41 0.02954 0.03303 0.03548 0.99% StateData::FillBoundary(geom) 41 0.02939 0.0329 0.03534 0.98% Castro::construct_new_source() 50 0.02895 0.0314 0.0342 0.95% Gravity::interpolate_monopole_grav() 21 0.02866 0.02968 0.03085 0.86% Castro::finalize_do_advance() 10 0.01411 0.02285 0.03038 0.85% Castro::construct_new_gravity_source() 10 0.0228 0.02512 0.02812 0.78% Castro::post_init() 1 0.0253 0.02556 0.02579 0.72% Amr::writePlotFile() 2 0.02253 0.02263 0.02287 0.64% Castro::post_timestep() 10 0.0158 0.01687 0.01951 0.54% Castro::apply_source_to_state() 20 0.0113 0.01273 0.01427 0.40% FabArray::Saxpy() 20 0.01125 0.01269 0.01421 0.40% FabArray::setDomainBndry() 41 0.007876 0.01075 0.0125 0.35% VisMF::Write(FabArray) 2 0.009226 0.009767 0.01222 0.34% Castro::Castro() 1 0.01029 0.01084 0.01166 0.32% Castro::check_for_nan() 20 0.009563 0.01024 0.01123 0.31% MultiFab::contains_nan() 20 0.009539 0.01022 0.01119 0.31% Castro::construct_old_source() 50 0.007969 0.009238 0.009799 0.27% Castro::construct_old_gravity_source() 10 0.007908 0.00916 0.009701 0.27% Castro::computeNewDt() 9 0.009269 0.009283 0.0093 0.26% Castro::initMFs() 1 0.006485 0.006945 0.007729 0.22% Other 261 0.02793 0.03132 0.03478 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 38 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-24-g2f93525639da) finalized