Initializing AMReX (24.06-24-g2f93525639da)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-24-g2f93525639da) initialized Starting run at 05:24:15 UTC on 2024-06-28. Successfully read inputs file ... Castro git describe: 24.06-31-gc47966edd AMReX git describe: 24.06-24-g2f9352563 Microphysics git describe: 24.06-36-g01c244ad reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014371131 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364835887 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342217278 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.370132455 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.365042171 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.344031996 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315179686 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314895374 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311299603 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.321910395 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318036224 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007626488 seconds Ending run at 05:24:19 UTC on 2024-06-28. Run time = 3.564513127 Run time without initialization = 3.380405545 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.564 ... 3.564 ... 3.565 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3533 2.3962 2.4440 68.56% Gravity::make_radial_gravity() 21 0.2929 0.2984 0.3039 8.53% check_for_negative_density() 10 0.06309 0.112 0.1576 4.42% Castro::initData() 1 0.04742 0.08754 0.1213 3.40% Castro::estTimeStep() 21 0.02529 0.06556 0.1109 3.11% FabArray::ParallelCopy_finish() 41 0.03757 0.05526 0.08446 2.37% FabArray::setVal() 143 0.06201 0.06857 0.0797 2.24% amrex::Copy() 193 0.06367 0.07607 0.07938 2.23% Castro::normalize_species() 62 0.0419 0.04361 0.05086 1.43% Castro::reset_internal_energy(Fab) 1008 0.04546 0.04634 0.04737 1.33% FabArray::ParallelCopy_nowait() 41 0.03352 0.03929 0.04109 1.15% FillPatchIterator::Initialize 41 0.0266 0.03245 0.03534 0.99% StateData::FillBoundary(geom) 41 0.03082 0.03246 0.03431 0.96% Gravity::interpolate_monopole_grav() 21 0.029 0.02973 0.03012 0.85% Castro::construct_new_gravity_source() 10 0.02277 0.02498 0.0283 0.79% Castro::initialize_do_advance() 10 0.0127 0.01717 0.02063 0.58% Castro::computeTemp() 63 0.01869 0.01952 0.02027 0.57% FabArray::Saxpy() 20 0.009966 0.01236 0.01342 0.38% Castro::initialize_advance() 10 0.005486 0.009727 0.01289 0.36% VisMF::Write(FabArray) 2 0.008491 0.009545 0.01197 0.34% Amr::writePlotFile() 2 0.007496 0.01002 0.01191 0.33% MultiFab::contains_nan() 20 0.009129 0.01008 0.01089 0.31% Castro::initMFs() 1 0.006414 0.007661 0.01025 0.29% FabArray::setDomainBndry() 41 0.007543 0.009145 0.01021 0.29% Castro::construct_old_gravity_source() 10 0.006714 0.008961 0.009586 0.27% Castro::construct_new_source() 50 0.005707 0.005969 0.006056 0.17% main() 1 0.003536 0.00383 0.004251 0.12% Amr::coarseTimeStep() 10 0.002307 0.003376 0.004122 0.12% Gravity::get_new_grav_vector() 11 0.003083 0.003492 0.004119 0.12% Gravity::get_old_grav_vector() 10 0.0017 0.001976 0.002178 0.06% AmrLevel::FillPatch() 41 0.0005993 0.000916 0.001148 0.03% Castro::finalize_do_advance() 10 0.0003816 0.0009052 0.001089 0.03% Amr::timeStep() 10 0.0001685 0.0002174 0.0004015 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000279 0.0002899 0.0003076 0.01% Castro::do_advance_ctu() 10 0.0001411 0.0001621 0.0001849 0.01% Castro::clean_state() 62 0.0001463 0.0001624 0.0001819 0.01% Castro::Castro() 1 7.222e-05 9.322e-05 0.0001434 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001038 0.0001165 0.0001387 0.00% StateDataPhysBCFunct::() 41 9.176e-05 0.0001044 0.0001207 0.00% Castro::do_old_sources() 10 6.969e-05 9.381e-05 0.0001096 0.00% Amr::FinalizeInit() 1 3.52e-06 1.687e-05 0.0001019 0.00% FabArray::ParallelCopy() 41 7.078e-05 9.063e-05 0.0001007 0.00% Castro::construct_old_source() 50 4.631e-05 7.227e-05 8.163e-05 0.00% FillPatchSingleLevel 41 6.151e-05 7.067e-05 8.158e-05 0.00% Castro::subcycle_advance_ctu() 10 4.024e-05 5.213e-05 6.822e-05 0.00% Castro::do_new_sources() 10 5.977e-05 6.321e-05 6.816e-05 0.00% Castro::apply_source_to_state() 20 3.274e-05 4.603e-05 5.543e-05 0.00% Castro::advance() 10 3.588e-05 4.477e-05 5.064e-05 0.00% Castro::expand_state() 10 1.812e-05 2.882e-05 4.821e-05 0.00% Amr::defBaseLevel() 1 3.308e-05 3.726e-05 4.244e-05 0.00% Castro::construct_old_gravity() 10 3.177e-05 3.515e-05 4.239e-05 0.00% Castro::construct_new_gravity() 10 2.929e-05 3.227e-05 3.544e-05 0.00% Castro::check_for_nan() 20 2.297e-05 2.446e-05 2.964e-05 0.00% Castro::post_timestep() 10 1.415e-05 1.712e-05 2.252e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.159e-05 1.497e-05 2.028e-05 0.00% Castro::post_init() 1 8.43e-06 1.001e-05 1.25e-05 0.00% Castro::computeNewDt() 9 7.573e-06 8.755e-06 1.158e-05 0.00% Amr::InitializeInit() 1 2.729e-06 3.642e-06 6.74e-06 0.00% Castro::computeInitialDt() 2 3.271e-06 3.719e-06 4.7e-06 0.00% Amr::initialInit() 1 1.611e-06 2.017e-06 3.366e-06 0.00% Amr::init() 1 1.992e-06 2.278e-06 2.573e-06 0.00% Other 260 0.01602 0.01914 0.02263 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.564 3.564 3.565 100.00% Amr::coarseTimeStep() 10 3.369 3.369 3.369 94.50% Amr::timeStep() 10 3.353 3.354 3.355 94.13% Castro::advance() 10 3.338 3.338 3.339 93.67% Castro::subcycle_advance_ctu() 10 3.257 3.265 3.272 91.79% Castro::do_advance_ctu() 10 3.257 3.265 3.272 91.78% Castro::construct_ctu_hydro_source() 10 2.527 2.529 2.535 71.10% Gravity::make_radial_gravity() 21 0.3091 0.314 0.3171 8.89% Gravity::get_new_grav_vector() 11 0.2117 0.2153 0.2164 6.07% AmrLevel::FillPatch() 41 0.1833 0.2002 0.2117 5.94% Castro::construct_new_gravity() 10 0.1891 0.1922 0.1929 5.41% Castro::construct_old_gravity() 10 0.1806 0.1841 0.1897 5.32% Gravity::get_old_grav_vector() 10 0.1801 0.1833 0.189 5.30% FillPatchIterator::Initialize 41 0.1534 0.1691 0.1841 5.16% Amr::init() 1 0.1832 0.1835 0.1836 5.15% Castro::initialize_do_advance() 10 0.1591 0.1674 0.1747 4.90% Amr::initialInit() 1 0.1684 0.1689 0.1691 4.74% check_for_negative_density() 10 0.06309 0.112 0.1576 4.42% FillPatchIterator::FillFromLevel0() 41 0.11 0.1275 0.1494 4.19% FillPatchSingleLevel 41 0.1099 0.1274 0.1493 4.19% Amr::InitializeInit() 1 0.06867 0.1093 0.1422 3.99% Amr::defBaseLevel() 1 0.06867 0.1093 0.1422 3.99% Castro::initData() 1 0.05086 0.09114 0.1251 3.51% Castro::expand_state() 10 0.1024 0.115 0.1235 3.47% Castro::clean_state() 62 0.1122 0.1148 0.1235 3.46% FabArray::ParallelCopy() 41 0.07786 0.09473 0.1181 3.31% Castro::estTimeStep() 21 0.02529 0.06556 0.1109 3.11% Amr::FinalizeInit() 1 0.02682 0.05961 0.1004 2.82% Castro::do_old_sources() 10 0.08575 0.08903 0.09121 2.56% FabArray::ParallelCopy_finish() 41 0.03757 0.05526 0.08446 2.37% FabArray::setVal() 143 0.06201 0.06857 0.0797 2.24% amrex::Copy() 193 0.06367 0.07607 0.07938 2.23% Castro::initialize_advance() 10 0.06243 0.06979 0.07816 2.19% Castro::computeInitialDt() 2 0.002616 0.03542 0.07614 2.14% Castro::do_new_sources() 10 0.06117 0.06642 0.07462 2.09% Castro::computeTemp() 63 0.06461 0.06615 0.06783 1.90% Castro::normalize_species() 62 0.0419 0.04361 0.05086 1.43% Castro::reset_internal_energy(MultiFab) 63 0.04575 0.04663 0.04768 1.34% Castro::reset_internal_energy(Fab) 1008 0.04546 0.04634 0.04737 1.33% FabArray::ParallelCopy_nowait() 41 0.0336 0.03938 0.04117 1.15% StateDataPhysBCFunct::() 41 0.03093 0.03257 0.03441 0.97% StateData::FillBoundary(geom) 41 0.03082 0.03246 0.03431 0.96% Castro::construct_new_source() 50 0.02882 0.03094 0.03429 0.96% Gravity::interpolate_monopole_grav() 21 0.029 0.02973 0.03012 0.85% Castro::construct_new_gravity_source() 10 0.02277 0.02498 0.0283 0.79% Castro::finalize_do_advance() 10 0.01354 0.02166 0.0271 0.76% Castro::post_init() 1 0.02384 0.02408 0.02425 0.68% Amr::writePlotFile() 2 0.02221 0.02228 0.02249 0.63% Castro::post_timestep() 10 0.01532 0.01574 0.01758 0.49% Castro::Castro() 1 0.009508 0.01133 0.01433 0.40% Castro::apply_source_to_state() 20 0.009999 0.01241 0.01348 0.38% FabArray::Saxpy() 20 0.009966 0.01236 0.01342 0.38% VisMF::Write(FabArray) 2 0.008491 0.009545 0.01197 0.34% Castro::check_for_nan() 20 0.009153 0.01011 0.01091 0.31% MultiFab::contains_nan() 20 0.009129 0.01008 0.01089 0.31% Castro::initMFs() 1 0.006414 0.007661 0.01025 0.29% FabArray::setDomainBndry() 41 0.007543 0.009145 0.01021 0.29% Castro::construct_old_source() 50 0.006761 0.009033 0.009664 0.27% Castro::construct_old_gravity_source() 10 0.006714 0.008961 0.009586 0.27% Castro::computeNewDt() 9 0.00926 0.0094 0.00945 0.27% AmrLevel::AmrLevel(dm) 1 0.005447 0.006479 0.008301 0.23% Other 260 0.02063 0.02466 0.02906 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 46 B 71 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-24-g2f93525639da) finalized