Initializing AMReX (24.06-26-g7418556773c7)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.06-26-g7418556773c7) initialized Starting run at 05:23:11 UTC on 2024-07-01. Successfully read inputs file ... Castro git describe: 24.06-31-gc47966edd AMReX git describe: 24.06-26-g741855677 Microphysics git describe: 24.06-39-g3ff348fe reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020752853 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.440611648 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.392291714 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.356655968 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.394446589 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.33350521 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.327453431 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.326952483 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.328271515 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.329978769 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.333902658 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009587283 seconds Ending run at 05:23:14 UTC on 2024-07-01. Run time = 3.80053621 Run time without initialization = 3.580726215 Average number of zones advanced per microsecond: 0.732 Average number of zones advanced per microsecond per rank: 0.092 TinyProfiler total time across processes [min...avg...max]: 3.799 ... 3.8 ... 3.801 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.4535 2.5442 2.6111 68.70% Gravity::make_radial_gravity() 21 0.2869 0.2942 0.3089 8.13% check_for_negative_density() 10 0.03808 0.1067 0.2014 5.30% Castro::initData() 1 0.04808 0.0914 0.1363 3.59% Castro::estTimeStep() 21 0.03298 0.07328 0.1246 3.28% FabArray::setVal() 143 0.0835 0.09471 0.1013 2.67% amrex::Copy() 193 0.07426 0.09198 0.09829 2.59% FabArray::ParallelCopy_finish() 41 0.04261 0.0488 0.06936 1.82% Castro::reset_internal_energy(Fab) 1008 0.04481 0.04924 0.05266 1.39% FabArray::ParallelCopy_nowait() 41 0.04024 0.04446 0.04663 1.23% Castro::normalize_species() 62 0.04192 0.04295 0.04468 1.18% FillPatchIterator::Initialize 41 0.03379 0.03552 0.03793 1.00% StateData::FillBoundary(geom) 41 0.03007 0.03311 0.03516 0.93% Gravity::interpolate_monopole_grav() 21 0.02736 0.02901 0.0299 0.79% Castro::construct_new_gravity_source() 10 0.02449 0.02611 0.02714 0.71% Castro::initialize_do_advance() 10 0.02121 0.02248 0.02429 0.64% Castro::computeTemp() 63 0.01815 0.02007 0.02183 0.57% VisMF::Write(FabArray) 2 0.01127 0.01344 0.01871 0.49% FabArray::Saxpy() 20 0.01582 0.01708 0.01794 0.47% Castro::initialize_advance() 10 0.01391 0.0152 0.0164 0.43% MultiFab::contains_nan() 20 0.01072 0.01258 0.01445 0.38% FabArray::setDomainBndry() 41 0.008691 0.01059 0.01405 0.37% Amr::writePlotFile() 2 0.009165 0.01202 0.01365 0.36% Castro::construct_old_gravity_source() 10 0.0116 0.01226 0.01324 0.35% Castro::initMFs() 1 0.008696 0.009911 0.01061 0.28% Castro::construct_new_source() 50 0.006397 0.006813 0.007256 0.19% main() 1 0.004812 0.005732 0.006298 0.17% Gravity::get_new_grav_vector() 11 0.003299 0.003678 0.004038 0.11% Amr::coarseTimeStep() 10 0.001004 0.001957 0.00343 0.09% Gravity::get_old_grav_vector() 10 0.001643 0.002242 0.002728 0.07% Castro::finalize_do_advance() 10 0.001102 0.001226 0.001294 0.03% AmrLevel::FillPatch() 41 0.0008403 0.001105 0.001209 0.03% Amr::timeStep() 10 0.0001631 0.0002502 0.0006176 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0003048 0.000321 0.0003479 0.01% Castro::do_advance_ctu() 10 0.0001491 0.0001884 0.0002227 0.01% Castro::clean_state() 62 0.0001619 0.0001868 0.0002128 0.01% Castro::Castro() 1 9.356e-05 0.0001324 0.0001507 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001121 0.0001268 0.0001493 0.00% Castro::do_old_sources() 10 9.071e-05 0.0001089 0.0001311 0.00% StateDataPhysBCFunct::() 41 9.578e-05 0.0001127 0.0001253 0.00% FabArray::ParallelCopy() 41 8.34e-05 9.49e-05 0.0001107 0.00% Castro::construct_old_source() 50 7.977e-05 8.929e-05 0.0001088 0.00% FillPatchSingleLevel 41 6.992e-05 8.017e-05 9.117e-05 0.00% Amr::FinalizeInit() 1 3.508e-06 1.483e-05 8.769e-05 0.00% Castro::subcycle_advance_ctu() 10 5.583e-05 6.757e-05 8.379e-05 0.00% Castro::do_new_sources() 10 5.425e-05 6.384e-05 7.299e-05 0.00% Castro::apply_source_to_state() 20 4.828e-05 5.799e-05 6.987e-05 0.00% Castro::advance() 10 4.877e-05 5.621e-05 6.484e-05 0.00% Amr::defBaseLevel() 1 4.038e-05 4.927e-05 5.633e-05 0.00% Castro::construct_old_gravity() 10 3.244e-05 3.972e-05 4.857e-05 0.00% Castro::construct_new_gravity() 10 2.826e-05 3.596e-05 4.689e-05 0.00% Castro::expand_state() 10 2.613e-05 3.147e-05 3.898e-05 0.00% Castro::check_for_nan() 20 2.081e-05 2.71e-05 3.374e-05 0.00% Castro::post_timestep() 10 1.46e-05 1.954e-05 3.309e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.335e-05 1.474e-05 1.709e-05 0.00% Castro::post_init() 1 8.224e-06 1.022e-05 1.424e-05 0.00% Amr::init() 1 1.871e-06 3.31e-06 9.413e-06 0.00% Castro::computeNewDt() 9 8.223e-06 8.779e-06 9.282e-06 0.00% Amr::initialInit() 1 1.469e-06 2.846e-06 8.801e-06 0.00% Amr::InitializeInit() 1 2.721e-06 3.803e-06 7.394e-06 0.00% Castro::computeInitialDt() 2 3.758e-06 4.433e-06 5.17e-06 0.00% Other 260 0.01945 0.02377 0.02566 0.68% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.799 3.8 3.801 100.00% Amr::coarseTimeStep() 10 3.565 3.565 3.565 93.80% Amr::timeStep() 10 3.551 3.553 3.554 93.50% Castro::advance() 10 3.536 3.537 3.538 93.08% Castro::subcycle_advance_ctu() 10 3.431 3.436 3.447 90.69% Castro::do_advance_ctu() 10 3.431 3.436 3.447 90.69% Castro::construct_ctu_hydro_source() 10 2.671 2.674 2.676 70.41% Gravity::make_radial_gravity() 21 0.3058 0.3123 0.3254 8.56% AmrLevel::FillPatch() 41 0.2004 0.2109 0.2226 5.86% Amr::init() 1 0.219 0.2192 0.2192 5.77% Gravity::get_new_grav_vector() 11 0.2109 0.2125 0.2155 5.67% check_for_negative_density() 10 0.03808 0.1067 0.2014 5.30% Amr::initialInit() 1 0.198 0.1989 0.1991 5.24% Castro::construct_old_gravity() 10 0.1823 0.1863 0.1959 5.15% Gravity::get_old_grav_vector() 10 0.1815 0.1855 0.195 5.13% Castro::initialize_do_advance() 10 0.1773 0.182 0.1902 5.00% Castro::construct_new_gravity() 10 0.1832 0.1843 0.1866 4.91% FillPatchIterator::Initialize 41 0.1631 0.173 0.186 4.89% Amr::InitializeInit() 1 0.07581 0.1211 0.1666 4.38% Amr::defBaseLevel() 1 0.07581 0.1211 0.1666 4.38% Castro::initData() 1 0.05284 0.09604 0.1406 3.70% FillPatchIterator::FillFromLevel0() 41 0.1196 0.1269 0.1402 3.69% FillPatchSingleLevel 41 0.1195 0.1267 0.14 3.68% Castro::expand_state() 10 0.1142 0.1204 0.1293 3.40% Castro::estTimeStep() 21 0.03298 0.07328 0.1246 3.28% Amr::FinalizeInit() 1 0.03241 0.07783 0.1232 3.24% Castro::clean_state() 62 0.1111 0.1184 0.1231 3.24% FabArray::ParallelCopy() 41 0.08658 0.09345 0.1098 2.89% Castro::do_old_sources() 10 0.1005 0.1037 0.1059 2.79% Castro::initialize_advance() 10 0.08542 0.09643 0.1014 2.67% FabArray::setVal() 143 0.0835 0.09471 0.1013 2.67% amrex::Copy() 193 0.07426 0.09198 0.09829 2.59% Castro::computeInitialDt() 2 0.002333 0.04788 0.09317 2.45% Castro::do_new_sources() 10 0.0637 0.06991 0.07477 1.97% Castro::computeTemp() 63 0.06391 0.06964 0.07438 1.96% FabArray::ParallelCopy_finish() 41 0.04261 0.0488 0.06936 1.82% Castro::reset_internal_energy(MultiFab) 63 0.04512 0.04957 0.053 1.39% Castro::reset_internal_energy(Fab) 1008 0.04481 0.04924 0.05266 1.39% FabArray::ParallelCopy_nowait() 41 0.04035 0.04455 0.04673 1.23% Castro::normalize_species() 62 0.04192 0.04295 0.04468 1.18% StateDataPhysBCFunct::() 41 0.03017 0.03322 0.03526 0.93% StateData::FillBoundary(geom) 41 0.03007 0.03311 0.03516 0.93% Castro::construct_new_source() 50 0.03097 0.03292 0.03427 0.90% Amr::writePlotFile() 2 0.02983 0.02998 0.0306 0.81% Gravity::interpolate_monopole_grav() 21 0.02736 0.02901 0.0299 0.79% Castro::post_init() 1 0.0289 0.02952 0.02978 0.78% Castro::construct_new_gravity_source() 10 0.02449 0.02611 0.02714 0.71% Castro::finalize_do_advance() 10 0.01202 0.01764 0.02459 0.65% VisMF::Write(FabArray) 2 0.01127 0.01344 0.01871 0.49% Castro::apply_source_to_state() 20 0.01588 0.01714 0.01801 0.47% FabArray::Saxpy() 20 0.01582 0.01708 0.01794 0.47% Castro::Castro() 1 0.01295 0.01656 0.01782 0.47% Castro::post_timestep() 10 0.01481 0.01544 0.01607 0.42% Castro::check_for_nan() 20 0.01074 0.01261 0.01448 0.38% MultiFab::contains_nan() 20 0.01072 0.01258 0.01445 0.38% FabArray::setDomainBndry() 41 0.008691 0.01059 0.01405 0.37% Castro::construct_old_source() 50 0.01168 0.01235 0.01335 0.35% Castro::construct_old_gravity_source() 10 0.0116 0.01226 0.01324 0.35% Castro::initMFs() 1 0.008696 0.009911 0.01061 0.28% Castro::computeNewDt() 9 0.008975 0.009 0.00903 0.24% AmrLevel::AmrLevel(dm) 1 0.007529 0.008089 0.008347 0.22% Other 260 0.02498 0.03043 0.03334 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 37 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.06-26-g7418556773c7) finalized