Initializing AMReX (24.07-2-g39f46ae30a49)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-2-g39f46ae30a49) initialized Starting run at 05:38:30 UTC on 2024-07-02. Successfully read inputs file ... Castro git describe: 24.06-33-g532cd05a4 AMReX git describe: 24.07-2-g39f46ae30 Microphysics git describe: 24.06-40-g41c88a6b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014416814 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355199646 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35282872 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327553525 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329486256 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.376334067 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.321113539 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312073159 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313638195 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.344973755 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.323736765 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.037877387 seconds Ending run at 05:38:33 UTC on 2024-07-02. Run time = 3.586647182 Run time without initialization = 3.400469329 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.585 ... 3.586 ... 3.587 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3328 2.3850 2.4292 67.73% Gravity::make_radial_gravity() 21 0.2934 0.3021 0.3135 8.74% check_for_negative_density() 10 0.06598 0.1137 0.1683 4.69% Castro::initData() 1 0.05111 0.09079 0.1229 3.43% Castro::estTimeStep() 21 0.02965 0.06054 0.1031 2.87% FabArray::ParallelCopy_finish() 41 0.03882 0.0579 0.09608 2.68% amrex::Copy() 193 0.06393 0.07964 0.09331 2.60% FabArray::setVal() 143 0.05644 0.06633 0.07268 2.03% Castro::reset_internal_energy(Fab) 1008 0.04367 0.04612 0.04906 1.37% Castro::normalize_species() 62 0.04105 0.04193 0.04295 1.20% Amr::writePlotFile() 2 0.03702 0.04 0.04163 1.16% FabArray::ParallelCopy_nowait() 41 0.03519 0.03955 0.04101 1.14% FillPatchIterator::Initialize 41 0.0272 0.03199 0.03493 0.97% StateData::FillBoundary(geom) 41 0.03118 0.03242 0.0345 0.96% Gravity::interpolate_monopole_grav() 21 0.0277 0.02951 0.03173 0.88% Castro::construct_new_gravity_source() 10 0.02222 0.0235 0.02447 0.68% Castro::computeTemp() 63 0.01754 0.01931 0.02011 0.56% Castro::initialize_do_advance() 10 0.01143 0.01581 0.01727 0.48% Castro::initialize_advance() 10 0.005452 0.01072 0.0136 0.38% VisMF::Write(FabArray) 2 0.009234 0.009841 0.01285 0.36% FabArray::Saxpy() 20 0.01013 0.01171 0.01272 0.35% MultiFab::contains_nan() 20 0.009119 0.01077 0.01173 0.33% Castro::initMFs() 1 0.006774 0.008096 0.0103 0.29% FabArray::setDomainBndry() 41 0.007875 0.009039 0.009854 0.27% Castro::construct_old_gravity_source() 10 0.006437 0.008647 0.009298 0.26% Castro::construct_new_source() 50 0.005736 0.006225 0.006569 0.18% main() 1 0.003555 0.004324 0.00487 0.14% Gravity::get_new_grav_vector() 11 0.002684 0.003305 0.003775 0.11% Amr::coarseTimeStep() 10 0.001082 0.00203 0.003078 0.09% Gravity::get_old_grav_vector() 10 0.001617 0.001999 0.002447 0.07% Castro::finalize_do_advance() 10 0.0004725 0.001034 0.001467 0.04% AmrLevel::FillPatch() 41 0.0007477 0.0009322 0.001058 0.03% Amr::timeStep() 10 0.0001688 0.0002284 0.0004739 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002832 0.0002902 0.0002981 0.01% Castro::clean_state() 62 0.0001455 0.0001676 0.0001876 0.01% Castro::do_advance_ctu() 10 0.0001363 0.0001526 0.0001744 0.00% FillPatchIterator::FillFromLevel0() 41 0.000104 0.0001173 0.0001362 0.00% Castro::Castro() 1 7.643e-05 9.47e-05 0.0001244 0.00% StateDataPhysBCFunct::() 41 9.567e-05 0.0001038 0.0001127 0.00% Castro::do_old_sources() 10 8.215e-05 8.901e-05 0.0001047 0.00% FabArray::ParallelCopy() 41 7.484e-05 8.255e-05 9.856e-05 0.00% Amr::FinalizeInit() 1 3.185e-06 1.49e-05 8.715e-05 0.00% FillPatchSingleLevel 41 6.283e-05 7.04e-05 7.781e-05 0.00% Castro::construct_old_source() 50 5.222e-05 6.541e-05 7.503e-05 0.00% Castro::do_new_sources() 10 5.406e-05 6.055e-05 6.694e-05 0.00% Castro::advance() 10 4.189e-05 4.924e-05 6.598e-05 0.00% Castro::subcycle_advance_ctu() 10 4.442e-05 5.085e-05 5.729e-05 0.00% Castro::apply_source_to_state() 20 3.948e-05 4.739e-05 5.597e-05 0.00% Amr::defBaseLevel() 1 3.595e-05 4.012e-05 4.572e-05 0.00% Castro::construct_old_gravity() 10 3.439e-05 3.747e-05 4.328e-05 0.00% Castro::construct_new_gravity() 10 2.918e-05 3.366e-05 4.115e-05 0.00% Castro::expand_state() 10 2.157e-05 2.588e-05 3.093e-05 0.00% Castro::check_for_nan() 20 2.058e-05 2.589e-05 2.937e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.318e-05 1.7e-05 2.369e-05 0.00% Castro::post_timestep() 10 1.495e-05 1.634e-05 1.924e-05 0.00% Amr::init() 1 1.948e-06 4.285e-06 1.787e-05 0.00% Castro::post_init() 1 8.269e-06 9.532e-06 1.166e-05 0.00% Castro::computeNewDt() 9 7.815e-06 8.501e-06 8.947e-06 0.00% Amr::InitializeInit() 1 2.812e-06 3.555e-06 6.199e-06 0.00% Castro::computeInitialDt() 2 3.075e-06 3.51e-06 4.14e-06 0.00% Amr::initialInit() 1 1.292e-06 1.729e-06 2.32e-06 0.00% Other 260 0.01596 0.01945 0.02284 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.585 3.586 3.587 100.00% Amr::coarseTimeStep() 10 3.358 3.358 3.358 93.62% Amr::timeStep() 10 3.344 3.345 3.346 93.30% Castro::advance() 10 3.329 3.33 3.33 92.84% Castro::subcycle_advance_ctu() 10 3.253 3.258 3.27 91.18% Castro::do_advance_ctu() 10 3.253 3.258 3.27 91.18% Castro::construct_ctu_hydro_source() 10 2.516 2.519 2.523 70.33% Gravity::make_radial_gravity() 21 0.3089 0.3173 0.326 9.09% AmrLevel::FillPatch() 41 0.1848 0.2025 0.2241 6.25% Gravity::get_new_grav_vector() 11 0.2075 0.2092 0.2105 5.87% Castro::construct_old_gravity() 10 0.1892 0.1952 0.2026 5.65% Gravity::get_old_grav_vector() 10 0.1884 0.1945 0.202 5.63% FillPatchIterator::Initialize 41 0.1552 0.1714 0.199 5.55% Castro::construct_new_gravity() 10 0.1856 0.1868 0.1878 5.24% Amr::init() 1 0.1853 0.1855 0.1857 5.18% Amr::initialInit() 1 0.1703 0.1709 0.1712 4.77% check_for_negative_density() 10 0.06598 0.1137 0.1683 4.69% Castro::initialize_do_advance() 10 0.1547 0.16 0.1653 4.61% FillPatchIterator::FillFromLevel0() 41 0.113 0.1303 0.163 4.54% FillPatchSingleLevel 41 0.1129 0.1302 0.1629 4.54% Amr::InitializeInit() 1 0.07285 0.1133 0.1447 4.03% Amr::defBaseLevel() 1 0.07285 0.1133 0.1447 4.03% FabArray::ParallelCopy() 41 0.0796 0.09763 0.1315 3.67% Castro::initData() 1 0.05481 0.09451 0.1266 3.53% Castro::expand_state() 10 0.1013 0.1083 0.1198 3.34% Castro::clean_state() 62 0.1083 0.1129 0.118 3.29% Castro::estTimeStep() 21 0.02965 0.06054 0.1031 2.87% Castro::do_old_sources() 10 0.09194 0.09756 0.102 2.84% Amr::FinalizeInit() 1 0.02629 0.0576 0.09831 2.74% FabArray::ParallelCopy_finish() 41 0.03882 0.0579 0.09608 2.68% amrex::Copy() 193 0.06393 0.07964 0.09331 2.60% Castro::computeInitialDt() 2 0.002269 0.03352 0.0741 2.07% Castro::initialize_advance() 10 0.05532 0.06829 0.07293 2.03% FabArray::setVal() 143 0.05644 0.06633 0.07268 2.03% Castro::computeTemp() 63 0.06156 0.06571 0.06947 1.94% Castro::do_new_sources() 10 0.05853 0.06146 0.06577 1.83% Amr::writePlotFile() 2 0.05237 0.05253 0.05298 1.48% Castro::reset_internal_energy(MultiFab) 63 0.04396 0.04641 0.04935 1.38% Castro::reset_internal_energy(Fab) 1008 0.04367 0.04612 0.04906 1.37% Castro::normalize_species() 62 0.04105 0.04193 0.04295 1.20% FabArray::ParallelCopy_nowait() 41 0.03529 0.03964 0.04109 1.15% StateDataPhysBCFunct::() 41 0.03128 0.03252 0.03459 0.96% StateData::FillBoundary(geom) 41 0.03118 0.03242 0.0345 0.96% Gravity::interpolate_monopole_grav() 21 0.0277 0.02951 0.03173 0.88% Castro::construct_new_source() 50 0.02851 0.02972 0.03103 0.87% Castro::construct_new_gravity_source() 10 0.02222 0.0235 0.02447 0.68% Castro::post_init() 1 0.02343 0.02365 0.02378 0.66% Castro::finalize_do_advance() 10 0.01497 0.01887 0.02288 0.64% Castro::post_timestep() 10 0.01476 0.01564 0.01617 0.45% Castro::Castro() 1 0.009438 0.01198 0.01454 0.41% VisMF::Write(FabArray) 2 0.009234 0.009841 0.01285 0.36% Castro::apply_source_to_state() 20 0.01017 0.01176 0.01277 0.36% FabArray::Saxpy() 20 0.01013 0.01171 0.01272 0.35% Castro::check_for_nan() 20 0.009143 0.0108 0.01175 0.33% MultiFab::contains_nan() 20 0.009119 0.01077 0.01173 0.33% Castro::initMFs() 1 0.006774 0.008096 0.0103 0.29% FabArray::setDomainBndry() 41 0.007875 0.009039 0.009854 0.27% Castro::construct_old_source() 50 0.006489 0.008712 0.009372 0.26% Castro::construct_old_gravity_source() 10 0.006437 0.008647 0.009298 0.26% Castro::computeNewDt() 9 0.009185 0.009198 0.009211 0.26% AmrLevel::AmrLevel(dm) 1 0.005387 0.006531 0.008252 0.23% Other 260 0.02043 0.02461 0.02847 0.79% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 42 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-2-g39f46ae30a49) finalized