Initializing AMReX (24.07-3-g7dc2081a91e1)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-3-g7dc2081a91e1) initialized Starting run at 05:20:07 UTC on 2024-07-04. Successfully read inputs file ... Castro git describe: 24.07 AMReX git describe: 24.07-3-g7dc2081a9 Microphysics git describe: 24.07-1-g0a96241b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014883413 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361522229 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.360790732 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33376133 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332122107 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.380175446 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.32179996 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315529509 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318584219 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312614135 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314977643 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007490679 seconds Ending run at 05:20:10 UTC on 2024-07-04. Run time = 3.550827337 Run time without initialization = 3.364270788 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.55 ... 3.551 ... 3.551 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3250 2.3900 2.4526 69.07% Gravity::make_radial_gravity() 21 0.2942 0.3074 0.3271 9.21% check_for_negative_density() 10 0.02515 0.09091 0.1602 4.51% Castro::initData() 1 0.04759 0.0868 0.1232 3.47% Castro::estTimeStep() 21 0.02508 0.06715 0.1072 3.02% FabArray::ParallelCopy_finish() 41 0.03603 0.05816 0.09748 2.75% amrex::Copy() 193 0.06373 0.07867 0.09002 2.54% FabArray::setVal() 143 0.05618 0.06705 0.07493 2.11% Castro::reset_internal_energy(Fab) 1008 0.04321 0.0467 0.04918 1.38% FabArray::ParallelCopy_nowait() 41 0.03451 0.04152 0.04762 1.34% Castro::normalize_species() 62 0.04114 0.04192 0.0434 1.22% StateData::FillBoundary(geom) 41 0.02919 0.03328 0.03844 1.08% FillPatchIterator::Initialize 41 0.02701 0.03185 0.03383 0.95% Gravity::interpolate_monopole_grav() 21 0.02782 0.02915 0.02984 0.84% Castro::initialize_do_advance() 10 0.01126 0.01725 0.02498 0.70% Castro::construct_new_gravity_source() 10 0.02182 0.02301 0.02443 0.69% FabArray::setDomainBndry() 41 0.006704 0.01045 0.02094 0.59% Castro::computeTemp() 63 0.01745 0.0195 0.02067 0.58% Castro::initialize_advance() 10 0.005195 0.0107 0.01419 0.40% MultiFab::contains_nan() 20 0.009539 0.01078 0.01373 0.39% VisMF::Write(FabArray) 2 0.009488 0.01012 0.01345 0.38% FabArray::Saxpy() 20 0.01059 0.012 0.01298 0.37% Amr::writePlotFile() 2 0.00748 0.009518 0.00996 0.28% Castro::construct_old_gravity_source() 10 0.006493 0.008685 0.009402 0.26% Castro::initMFs() 1 0.006589 0.007193 0.008282 0.23% Castro::construct_new_source() 50 0.005696 0.006254 0.006716 0.19% main() 1 0.00344 0.00392 0.004177 0.12% Gravity::get_new_grav_vector() 11 0.002744 0.003381 0.003785 0.11% Amr::coarseTimeStep() 10 0.0008356 0.001651 0.002556 0.07% Gravity::get_old_grav_vector() 10 0.001455 0.001879 0.002231 0.06% Castro::finalize_do_advance() 10 0.0003741 0.0009787 0.001226 0.03% AmrLevel::FillPatch() 41 0.0006529 0.001026 0.001174 0.03% Amr::timeStep() 10 0.000183 0.000214 0.0003609 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002762 0.0002892 0.0003114 0.01% Castro::clean_state() 62 0.0001409 0.0001595 0.0001803 0.01% StateDataPhysBCFunct::() 41 9.309e-05 0.0001221 0.0001736 0.00% Castro::do_advance_ctu() 10 0.000134 0.0001521 0.0001691 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001087 0.0001212 0.0001564 0.00% Castro::Castro() 1 6.965e-05 9.519e-05 0.0001179 0.00% Castro::do_old_sources() 10 7.733e-05 8.847e-05 9.992e-05 0.00% FabArray::ParallelCopy() 41 8.164e-05 8.847e-05 9.947e-05 0.00% Amr::FinalizeInit() 1 3.452e-06 1.498e-05 9.156e-05 0.00% FillPatchSingleLevel 41 7.174e-05 7.909e-05 8.609e-05 0.00% Castro::construct_old_source() 50 4.662e-05 6.675e-05 7.637e-05 0.00% Castro::do_new_sources() 10 5.816e-05 6.393e-05 7.262e-05 0.00% Castro::advance() 10 3.677e-05 4.62e-05 5.812e-05 0.00% Castro::subcycle_advance_ctu() 10 4.07e-05 4.632e-05 5.604e-05 0.00% Castro::apply_source_to_state() 20 4.145e-05 4.75e-05 5.278e-05 0.00% Castro::construct_old_gravity() 10 3.407e-05 3.921e-05 4.556e-05 0.00% Castro::expand_state() 10 2.108e-05 2.761e-05 4.329e-05 0.00% Castro::construct_new_gravity() 10 3.039e-05 3.524e-05 4.073e-05 0.00% Amr::defBaseLevel() 1 2.804e-05 3.26e-05 3.873e-05 0.00% Castro::check_for_nan() 20 2.157e-05 2.604e-05 3.529e-05 0.00% Castro::post_timestep() 10 1.436e-05 1.634e-05 1.75e-05 0.00% Castro::post_init() 1 8.21e-06 1.003e-05 1.656e-05 0.00% Castro::computeNewDt() 9 7.331e-06 8.976e-06 1.162e-05 0.00% Amr::InitializeInit() 1 2.625e-06 3.418e-06 6.282e-06 0.00% Castro::computeInitialDt() 2 2.799e-06 3.636e-06 5.482e-06 0.00% Amr::init() 1 1.581e-06 2.105e-06 2.656e-06 0.00% Amr::initialInit() 1 1.47e-06 1.905e-06 2.43e-06 0.00% Other 261 0.01643 0.01991 0.02177 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.55 3.551 3.551 100.00% Amr::coarseTimeStep() 10 3.353 3.353 3.353 94.42% Amr::timeStep() 10 3.338 3.339 3.34 94.06% Castro::advance() 10 3.323 3.323 3.324 93.60% Castro::subcycle_advance_ctu() 10 3.245 3.252 3.267 92.01% Castro::do_advance_ctu() 10 3.245 3.252 3.267 92.01% Castro::construct_ctu_hydro_source() 10 2.499 2.501 2.505 70.55% Gravity::make_radial_gravity() 21 0.3091 0.3227 0.34 9.57% AmrLevel::FillPatch() 41 0.1917 0.2091 0.2187 6.16% Castro::construct_old_gravity() 10 0.1908 0.2012 0.2156 6.07% Gravity::get_old_grav_vector() 10 0.1897 0.2004 0.215 6.05% Gravity::get_new_grav_vector() 11 0.2038 0.2052 0.2066 5.82% FillPatchIterator::Initialize 41 0.1579 0.1758 0.1954 5.50% Amr::init() 1 0.1858 0.186 0.186 5.24% Castro::construct_new_gravity() 10 0.182 0.1828 0.1839 5.18% Castro::initialize_do_advance() 10 0.1705 0.1762 0.1811 5.10% Amr::initialInit() 1 0.1707 0.1713 0.1715 4.83% FillPatchIterator::FillFromLevel0() 41 0.1155 0.1335 0.1616 4.55% FillPatchSingleLevel 41 0.1153 0.1333 0.1615 4.55% check_for_negative_density() 10 0.02515 0.09091 0.1602 4.51% Amr::InitializeInit() 1 0.06967 0.1079 0.1452 4.09% Amr::defBaseLevel() 1 0.06967 0.1079 0.1452 4.09% FabArray::ParallelCopy() 41 0.07968 0.09986 0.1322 3.72% Castro::expand_state() 10 0.1085 0.1224 0.1317 3.71% Castro::initData() 1 0.05109 0.09063 0.1266 3.57% Castro::clean_state() 62 0.1087 0.1149 0.1195 3.36% Castro::estTimeStep() 21 0.02508 0.06715 0.1072 3.02% Amr::FinalizeInit() 1 0.02621 0.06339 0.1017 2.87% Castro::do_old_sources() 10 0.09141 0.09446 0.09779 2.75% FabArray::ParallelCopy_finish() 41 0.03603 0.05816 0.09748 2.75% amrex::Copy() 193 0.06373 0.07867 0.09002 2.54% Castro::computeInitialDt() 2 0.002226 0.03951 0.07777 2.19% FabArray::setVal() 143 0.05618 0.06705 0.07493 2.11% Castro::initialize_advance() 10 0.05216 0.06835 0.07479 2.11% Castro::computeTemp() 63 0.06093 0.06648 0.07016 1.98% Castro::do_new_sources() 10 0.05633 0.06196 0.06675 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04349 0.04699 0.04949 1.39% Castro::reset_internal_energy(Fab) 1008 0.04321 0.0467 0.04918 1.38% FabArray::ParallelCopy_nowait() 41 0.0346 0.04161 0.0477 1.34% Castro::normalize_species() 62 0.04114 0.04192 0.0434 1.22% StateDataPhysBCFunct::() 41 0.02928 0.0334 0.03854 1.09% StateData::FillBoundary(geom) 41 0.02919 0.03328 0.03844 1.08% Castro::construct_new_source() 50 0.02752 0.02927 0.031 0.87% Gravity::interpolate_monopole_grav() 21 0.02782 0.02915 0.02984 0.84% Castro::construct_new_gravity_source() 10 0.02182 0.02301 0.02443 0.69% Castro::finalize_do_advance() 10 0.01291 0.0178 0.02405 0.68% Castro::post_init() 1 0.02282 0.02332 0.02361 0.66% Amr::writePlotFile() 2 0.02212 0.02224 0.02267 0.64% FabArray::setDomainBndry() 41 0.006704 0.01045 0.02094 0.59% Castro::post_timestep() 10 0.01479 0.01565 0.01615 0.45% Castro::check_for_nan() 20 0.00956 0.01081 0.01377 0.39% MultiFab::contains_nan() 20 0.009539 0.01078 0.01373 0.39% VisMF::Write(FabArray) 2 0.009488 0.01012 0.01345 0.38% Castro::apply_source_to_state() 20 0.01063 0.01205 0.01303 0.37% FabArray::Saxpy() 20 0.01059 0.012 0.01298 0.37% Castro::Castro() 1 0.009996 0.01106 0.01202 0.34% Castro::computeNewDt() 9 0.01079 0.01082 0.01085 0.31% Castro::construct_old_source() 50 0.006539 0.008752 0.009478 0.27% Castro::construct_old_gravity_source() 10 0.006493 0.008685 0.009402 0.26% Castro::initMFs() 1 0.006589 0.007193 0.008282 0.23% Other 261 0.02652 0.03104 0.03425 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 40 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-3-g7dc2081a91e1) finalized