Initializing AMReX (24.07-3-g7dc2081a91e1)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-3-g7dc2081a91e1) initialized Starting run at 05:20:18 UTC on 2024-07-05. Successfully read inputs file ... Castro git describe: 24.07 AMReX git describe: 24.07-3-g7dc2081a9 Microphysics git describe: 24.07-1-g0a96241b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014618609 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361817615 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.357541605 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.358229441 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.35836346 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368637819 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.318680717 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316014203 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314614822 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311952129 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311573159 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008378816 seconds Ending run at 05:20:21 UTC on 2024-07-05. Run time = 3.579123145 Run time without initialization = 3.391093136 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.579 ... 3.579 ... 3.579 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3257 2.3880 2.4324 67.96% Gravity::make_radial_gravity() 21 0.2972 0.3039 0.3162 8.83% check_for_negative_density() 10 0.04579 0.09075 0.1543 4.31% Castro::initData() 1 0.05122 0.08638 0.1235 3.45% Castro::estTimeStep() 21 0.03213 0.07156 0.111 3.10% amrex::Copy() 193 0.07624 0.08313 0.08564 2.39% FabArray::setVal() 143 0.06693 0.07287 0.08185 2.29% FabArray::ParallelCopy_finish() 41 0.05029 0.06324 0.07612 2.13% Castro::reset_internal_energy(Fab) 1008 0.04567 0.04706 0.04806 1.34% Castro::normalize_species() 62 0.04165 0.04339 0.0457 1.28% FabArray::ParallelCopy_nowait() 41 0.03898 0.04181 0.04438 1.24% StateData::FillBoundary(geom) 41 0.0304 0.03347 0.03656 1.02% FillPatchIterator::Initialize 41 0.02693 0.03388 0.03644 1.02% Gravity::interpolate_monopole_grav() 21 0.0285 0.02954 0.03167 0.88% Castro::construct_new_gravity_source() 10 0.02346 0.02561 0.029 0.81% Castro::initialize_do_advance() 10 0.01556 0.01834 0.02081 0.58% Castro::computeTemp() 63 0.01874 0.01992 0.02056 0.57% FabArray::Saxpy() 20 0.01199 0.01371 0.01492 0.42% Castro::initialize_advance() 10 0.009734 0.01147 0.01378 0.39% MultiFab::contains_nan() 20 0.009075 0.0107 0.01315 0.37% VisMF::Write(FabArray) 2 0.009242 0.009878 0.0131 0.37% FabArray::setDomainBndry() 41 0.007593 0.009916 0.01113 0.31% Amr::writePlotFile() 2 0.00741 0.01028 0.01109 0.31% Castro::construct_old_gravity_source() 10 0.008834 0.009735 0.01077 0.30% Castro::initMFs() 1 0.006676 0.00732 0.007803 0.22% Castro::construct_new_source() 50 0.00602 0.006195 0.00638 0.18% main() 1 0.004155 0.004306 0.004594 0.13% Gravity::get_new_grav_vector() 11 0.002924 0.003516 0.003804 0.11% Amr::coarseTimeStep() 10 0.00151 0.002232 0.003017 0.08% Gravity::get_old_grav_vector() 10 0.001497 0.0021 0.002658 0.07% AmrLevel::FillPatch() 41 0.001014 0.001178 0.001267 0.04% Castro::finalize_do_advance() 10 0.00107 0.001104 0.001179 0.03% Amr::timeStep() 10 0.0001728 0.0002219 0.0004237 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002829 0.0002943 0.0003178 0.01% Castro::do_advance_ctu() 10 0.000141 0.0001667 0.0001968 0.01% Castro::clean_state() 62 0.0001416 0.0001649 0.0001908 0.01% StateDataPhysBCFunct::() 41 0.0001087 0.0001171 0.0001458 0.00% FillPatchIterator::FillFromLevel0() 41 0.000112 0.0001278 0.000139 0.00% Castro::do_old_sources() 10 7.88e-05 0.0001008 0.0001306 0.00% Amr::FinalizeInit() 1 3.465e-06 1.841e-05 0.0001162 0.00% FabArray::ParallelCopy() 41 8.325e-05 9.565e-05 0.0001062 0.00% Castro::Castro() 1 7.882e-05 9.131e-05 0.0001056 0.00% Castro::construct_old_source() 50 6.917e-05 7.901e-05 9.593e-05 0.00% FillPatchSingleLevel 41 7.044e-05 8.418e-05 9.525e-05 0.00% Castro::do_new_sources() 10 6.005e-05 6.431e-05 6.932e-05 0.00% Amr::defBaseLevel() 1 3.158e-05 4.594e-05 5.659e-05 0.00% Castro::subcycle_advance_ctu() 10 4.264e-05 4.959e-05 5.604e-05 0.00% Castro::apply_source_to_state() 20 4.04e-05 4.786e-05 5.36e-05 0.00% Castro::advance() 10 4.384e-05 4.714e-05 5.2e-05 0.00% Castro::construct_old_gravity() 10 3.097e-05 4.026e-05 5.038e-05 0.00% Castro::construct_new_gravity() 10 2.988e-05 3.628e-05 4.793e-05 0.00% Castro::expand_state() 10 2.203e-05 2.612e-05 3.366e-05 0.00% Castro::check_for_nan() 20 2.064e-05 2.416e-05 2.995e-05 0.00% Castro::post_timestep() 10 1.515e-05 1.757e-05 2.4e-05 0.00% Castro::post_init() 1 9.64e-06 1.089e-05 1.456e-05 0.00% Castro::computeNewDt() 9 7.97e-06 8.95e-06 1.125e-05 0.00% Amr::init() 1 2.603e-06 4.371e-06 8.428e-06 0.00% Amr::InitializeInit() 1 3.199e-06 3.762e-06 6.569e-06 0.00% Castro::computeInitialDt() 2 3.096e-06 3.704e-06 4.301e-06 0.00% Amr::initialInit() 1 1.408e-06 2.049e-06 2.687e-06 0.00% Other 261 0.01788 0.02048 0.02165 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.579 3.579 3.579 100.00% Amr::coarseTimeStep() 10 3.378 3.378 3.378 94.38% Amr::timeStep() 10 3.364 3.365 3.366 94.03% Castro::advance() 10 3.348 3.349 3.349 93.58% Castro::subcycle_advance_ctu() 10 3.264 3.271 3.275 91.51% Castro::do_advance_ctu() 10 3.264 3.271 3.275 91.51% Castro::construct_ctu_hydro_source() 10 2.496 2.5 2.504 69.97% Gravity::make_radial_gravity() 21 0.3146 0.3214 0.332 9.28% AmrLevel::FillPatch() 41 0.2007 0.217 0.2291 6.40% Gravity::get_new_grav_vector() 11 0.219 0.2203 0.2223 6.21% Castro::construct_old_gravity() 10 0.1864 0.1912 0.1999 5.58% Gravity::get_old_grav_vector() 10 0.1855 0.1903 0.1989 5.56% Castro::construct_new_gravity() 10 0.1964 0.1972 0.1988 5.56% FillPatchIterator::Initialize 41 0.1725 0.1828 0.1925 5.38% Amr::init() 1 0.1873 0.1875 0.1875 5.24% Castro::initialize_do_advance() 10 0.1636 0.1779 0.1861 5.20% Amr::initialInit() 1 0.1724 0.1727 0.1728 4.83% check_for_negative_density() 10 0.04579 0.09075 0.1543 4.31% FillPatchIterator::FillFromLevel0() 41 0.1266 0.139 0.1478 4.13% FillPatchSingleLevel 41 0.1265 0.1389 0.1477 4.13% Amr::InitializeInit() 1 0.07341 0.108 0.1458 4.07% Amr::defBaseLevel() 1 0.07341 0.108 0.1458 4.07% Castro::expand_state() 10 0.1089 0.1226 0.131 3.66% Castro::initData() 1 0.055 0.09021 0.1274 3.56% Castro::clean_state() 62 0.1144 0.1174 0.1192 3.33% FabArray::ParallelCopy() 41 0.09145 0.1052 0.1153 3.22% Castro::estTimeStep() 21 0.03213 0.07156 0.111 3.10% Castro::do_old_sources() 10 0.09222 0.09745 0.1008 2.82% Amr::FinalizeInit() 1 0.02688 0.06464 0.09932 2.77% amrex::Copy() 193 0.07624 0.08313 0.08564 2.39% FabArray::setVal() 143 0.06693 0.07287 0.08185 2.29% Castro::initialize_advance() 10 0.06978 0.07388 0.08101 2.26% Castro::do_new_sources() 10 0.06318 0.06849 0.07661 2.14% FabArray::ParallelCopy_finish() 41 0.05029 0.06324 0.07612 2.13% Castro::computeInitialDt() 2 0.002272 0.04004 0.07469 2.09% Castro::computeTemp() 63 0.06595 0.06727 0.06884 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04595 0.04735 0.04835 1.35% Castro::reset_internal_energy(Fab) 1008 0.04567 0.04706 0.04806 1.34% Castro::normalize_species() 62 0.04165 0.04339 0.0457 1.28% FabArray::ParallelCopy_nowait() 41 0.03908 0.0419 0.04446 1.24% StateDataPhysBCFunct::() 41 0.03052 0.03358 0.03667 1.02% StateData::FillBoundary(geom) 41 0.0304 0.03347 0.03656 1.02% Castro::construct_new_source() 50 0.02967 0.03181 0.03529 0.99% Gravity::interpolate_monopole_grav() 21 0.0285 0.02954 0.03167 0.88% Castro::construct_new_gravity_source() 10 0.02346 0.02561 0.029 0.81% Castro::finalize_do_advance() 10 0.01463 0.0227 0.02817 0.79% Castro::post_init() 1 0.02385 0.02409 0.02417 0.68% Amr::writePlotFile() 2 0.02319 0.02326 0.02333 0.65% Castro::post_timestep() 10 0.0155 0.01593 0.01631 0.46% Castro::apply_source_to_state() 20 0.01204 0.01376 0.01497 0.42% FabArray::Saxpy() 20 0.01199 0.01371 0.01492 0.42% Castro::check_for_nan() 20 0.009099 0.01072 0.01318 0.37% MultiFab::contains_nan() 20 0.009075 0.0107 0.01315 0.37% VisMF::Write(FabArray) 2 0.009242 0.009878 0.0131 0.37% Castro::Castro() 1 0.009586 0.01143 0.01215 0.34% FabArray::setDomainBndry() 41 0.007593 0.009916 0.01113 0.31% Castro::construct_old_source() 50 0.008904 0.009814 0.01086 0.30% Castro::construct_old_gravity_source() 10 0.008834 0.009735 0.01077 0.30% Castro::computeNewDt() 9 0.009926 0.00993 0.009938 0.28% Castro::initMFs() 1 0.006676 0.00732 0.007803 0.22% Other 261 0.0283 0.03209 0.03411 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 40 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-3-g7dc2081a91e1) finalized