Initializing AMReX (24.07-10-g85ae84ea8002)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-10-g85ae84ea8002) initialized Starting run at 18:54:44 UTC on 2024-07-06. Successfully read inputs file ... Castro git describe: 24.07 AMReX git describe: 24.07-10-g85ae84ea8 Microphysics git describe: 24.07-3-g0380d0fc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014285852 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355405379 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.33552251 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339795456 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326768836 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.370798807 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.317480599 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310608004 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308780456 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310709394 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309473426 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007732329 seconds Ending run at 18:54:48 UTC on 2024-07-06. Run time = 3.485813887 Run time without initialization = 3.298109697 Average number of zones advanced per microsecond: 0.795 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.485 ... 3.486 ... 3.486 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3181 2.3663 2.3921 68.62% Gravity::make_radial_gravity() 21 0.2869 0.2974 0.3102 8.90% Castro::initData() 1 0.04908 0.08701 0.1224 3.51% check_for_negative_density() 10 0.03654 0.06623 0.119 3.41% Castro::estTimeStep() 21 0.02444 0.0641 0.1078 3.09% FabArray::ParallelCopy_finish() 41 0.03566 0.05754 0.1035 2.97% amrex::Copy() 193 0.0616 0.08067 0.0926 2.66% FabArray::setVal() 143 0.05315 0.06582 0.07288 2.09% Castro::reset_internal_energy(Fab) 1008 0.0441 0.04621 0.0478 1.37% FabArray::ParallelCopy_nowait() 41 0.0352 0.042 0.04675 1.34% Castro::normalize_species() 62 0.04173 0.04237 0.04347 1.25% FillPatchIterator::Initialize 41 0.02689 0.03248 0.0364 1.04% StateData::FillBoundary(geom) 41 0.02949 0.03237 0.03525 1.01% Gravity::interpolate_monopole_grav() 21 0.02692 0.02875 0.02962 0.85% Castro::construct_new_gravity_source() 10 0.02238 0.0231 0.02437 0.70% Castro::computeTemp() 63 0.01842 0.01929 0.01998 0.57% Castro::initialize_do_advance() 10 0.01133 0.01562 0.01706 0.49% Castro::initialize_advance() 10 0.005329 0.01049 0.01325 0.38% FabArray::Saxpy() 20 0.01053 0.01195 0.0129 0.37% VisMF::Write(FabArray) 2 0.009204 0.009802 0.01271 0.36% MultiFab::contains_nan() 20 0.009949 0.01061 0.0116 0.33% FabArray::setDomainBndry() 41 0.007186 0.00899 0.01007 0.29% Amr::writePlotFile() 2 0.007574 0.009473 0.009965 0.29% Castro::construct_old_gravity_source() 10 0.006615 0.008687 0.009163 0.26% Castro::initMFs() 1 0.006559 0.007115 0.007812 0.22% Castro::construct_new_source() 50 0.005507 0.006136 0.006323 0.18% main() 1 0.003578 0.003879 0.004251 0.12% Gravity::get_new_grav_vector() 11 0.00297 0.003318 0.003584 0.10% Amr::coarseTimeStep() 10 0.001429 0.002038 0.002877 0.08% Gravity::get_old_grav_vector() 10 0.001616 0.00196 0.002369 0.07% Castro::finalize_do_advance() 10 0.0004843 0.001009 0.00111 0.03% AmrLevel::FillPatch() 41 0.0007049 0.0009203 0.001003 0.03% Amr::timeStep() 10 0.0001611 0.0002151 0.0003766 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002878 0.0003029 0.0003116 0.01% Castro::clean_state() 62 0.0001402 0.0001579 0.0001865 0.01% Castro::do_advance_ctu() 10 0.0001322 0.0001486 0.0001739 0.00% StateDataPhysBCFunct::() 41 8.634e-05 0.0001168 0.0001442 0.00% FillPatchIterator::FillFromLevel0() 41 9.947e-05 0.0001069 0.0001188 0.00% Castro::Castro() 1 8.22e-05 8.968e-05 0.0001034 0.00% FabArray::ParallelCopy() 41 7.598e-05 8.912e-05 9.745e-05 0.00% Castro::do_old_sources() 10 7.042e-05 8.116e-05 9.522e-05 0.00% FillPatchSingleLevel 41 6.992e-05 7.92e-05 8.993e-05 0.00% Castro::construct_old_source() 50 4.793e-05 6.62e-05 7.474e-05 0.00% Amr::FinalizeInit() 1 3.972e-06 1.278e-05 7.029e-05 0.00% Castro::do_new_sources() 10 5.32e-05 6.078e-05 6.919e-05 0.00% Castro::subcycle_advance_ctu() 10 4.096e-05 4.829e-05 5.663e-05 0.00% Castro::construct_old_gravity() 10 3.088e-05 3.821e-05 5.662e-05 0.00% Castro::advance() 10 3.68e-05 4.709e-05 5.579e-05 0.00% Castro::construct_new_gravity() 10 2.697e-05 3.461e-05 5.279e-05 0.00% Castro::apply_source_to_state() 20 3.266e-05 4.412e-05 4.851e-05 0.00% Castro::check_for_nan() 20 2.392e-05 2.824e-05 4.494e-05 0.00% Amr::defBaseLevel() 1 3.09e-05 3.601e-05 4.128e-05 0.00% Castro::expand_state() 10 1.946e-05 2.491e-05 2.912e-05 0.00% Castro::post_timestep() 10 1.616e-05 2.194e-05 2.551e-05 0.00% Castro::post_init() 1 8.663e-06 1.044e-05 1.366e-05 0.00% Castro::computeNewDt() 9 7.561e-06 9.745e-06 1.189e-05 0.00% Amr::initialInit() 1 1.433e-06 3.634e-06 9.937e-06 0.00% Amr::InitializeInit() 1 2.802e-06 3.755e-06 6.56e-06 0.00% Castro::computeInitialDt() 2 3.003e-06 3.817e-06 5.426e-06 0.00% Amr::init() 1 1.518e-06 2.028e-06 2.823e-06 0.00% Other 261 0.01663 0.01999 0.02161 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.485 3.486 3.486 100.00% Amr::coarseTimeStep() 10 3.286 3.286 3.286 94.27% Amr::timeStep() 10 3.273 3.274 3.274 93.93% Castro::advance() 10 3.257 3.258 3.258 93.46% Castro::subcycle_advance_ctu() 10 3.182 3.187 3.201 91.83% Castro::do_advance_ctu() 10 3.182 3.187 3.201 91.83% Castro::construct_ctu_hydro_source() 10 2.45 2.453 2.458 70.51% Gravity::make_radial_gravity() 21 0.303 0.3134 0.3235 9.28% AmrLevel::FillPatch() 41 0.192 0.2057 0.2266 6.50% Gravity::get_new_grav_vector() 11 0.2077 0.2094 0.2111 6.06% FillPatchIterator::Initialize 41 0.1605 0.1738 0.2027 5.81% Castro::construct_old_gravity() 10 0.1845 0.1921 0.1983 5.69% Gravity::get_old_grav_vector() 10 0.1838 0.1914 0.1976 5.67% Amr::init() 1 0.187 0.1871 0.1872 5.37% Castro::construct_new_gravity() 10 0.1836 0.1846 0.1858 5.33% Amr::initialInit() 1 0.1725 0.173 0.1732 4.97% FillPatchIterator::FillFromLevel0() 41 0.1181 0.1324 0.1686 4.84% FillPatchSingleLevel 41 0.118 0.1323 0.1685 4.83% Castro::initialize_do_advance() 10 0.1537 0.1592 0.1644 4.72% Amr::InitializeInit() 1 0.06898 0.1081 0.1442 4.14% Amr::defBaseLevel() 1 0.06897 0.1081 0.1442 4.14% FabArray::ParallelCopy() 41 0.08256 0.09971 0.1388 3.98% Castro::initData() 1 0.05306 0.09076 0.1258 3.61% check_for_negative_density() 10 0.03654 0.06623 0.119 3.41% Castro::clean_state() 62 0.1114 0.1148 0.118 3.38% Castro::expand_state() 10 0.1012 0.1076 0.1179 3.38% Castro::estTimeStep() 21 0.02444 0.0641 0.1078 3.09% Castro::do_old_sources() 10 0.09249 0.0996 0.1042 2.99% Amr::FinalizeInit() 1 0.02889 0.06498 0.1035 2.97% FabArray::ParallelCopy_finish() 41 0.03566 0.05754 0.1035 2.97% amrex::Copy() 193 0.0616 0.08067 0.0926 2.66% Castro::computeInitialDt() 2 0.002233 0.03832 0.07727 2.22% FabArray::setVal() 143 0.05315 0.06582 0.07288 2.09% Castro::initialize_advance() 10 0.05279 0.06768 0.07246 2.08% Castro::computeTemp() 63 0.06301 0.06581 0.06808 1.95% Castro::do_new_sources() 10 0.05787 0.06168 0.06509 1.87% Castro::reset_internal_energy(MultiFab) 63 0.04439 0.04651 0.0481 1.38% Castro::reset_internal_energy(Fab) 1008 0.0441 0.04621 0.0478 1.37% FabArray::ParallelCopy_nowait() 41 0.03529 0.04208 0.04683 1.34% Castro::normalize_species() 62 0.04173 0.04237 0.04347 1.25% StateDataPhysBCFunct::() 41 0.02958 0.03248 0.03538 1.01% StateData::FillBoundary(geom) 41 0.02949 0.03237 0.03525 1.01% Castro::construct_new_source() 50 0.0281 0.02923 0.03064 0.88% Gravity::interpolate_monopole_grav() 21 0.02692 0.02875 0.02962 0.85% Castro::post_init() 1 0.02561 0.02615 0.02634 0.76% Castro::construct_new_gravity_source() 10 0.02238 0.0231 0.02437 0.70% Amr::writePlotFile() 2 0.02179 0.0219 0.02231 0.64% Castro::finalize_do_advance() 10 0.01388 0.01759 0.02177 0.62% Castro::post_timestep() 10 0.01519 0.01593 0.0163 0.47% Castro::apply_source_to_state() 20 0.01056 0.012 0.01295 0.37% FabArray::Saxpy() 20 0.01053 0.01195 0.0129 0.37% VisMF::Write(FabArray) 2 0.009204 0.009802 0.01271 0.36% Castro::Castro() 1 0.009705 0.01109 0.01211 0.35% Castro::check_for_nan() 20 0.009973 0.01064 0.01163 0.33% MultiFab::contains_nan() 20 0.009949 0.01061 0.0116 0.33% FabArray::setDomainBndry() 41 0.007186 0.00899 0.01007 0.29% Castro::construct_old_source() 50 0.006663 0.008753 0.009238 0.27% Castro::computeNewDt() 9 0.009198 0.009213 0.009235 0.26% Castro::construct_old_gravity_source() 10 0.006615 0.008687 0.009163 0.26% Castro::initMFs() 1 0.006559 0.007115 0.007812 0.22% Other 261 0.02678 0.03104 0.03339 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 41 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-10-g85ae84ea8002) finalized