Initializing AMReX (24.07-10-g85ae84ea8002)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-10-g85ae84ea8002) initialized Starting run at 05:23:20 UTC on 2024-07-08. Successfully read inputs file ... Castro git describe: 24.07-2-g0538b05f3 AMReX git describe: 24.07-10-g85ae84ea8 Microphysics git describe: 24.07-2-g4fc88926 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014666858 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35933964 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34823596 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338386016 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33637806 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.378485097 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.318569659 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313901369 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313291965 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313801019 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313846589 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.03759163 seconds Ending run at 05:23:23 UTC on 2024-07-08. Run time = 3.563054201 Run time without initialization = 3.377175732 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.562 ... 3.563 ... 3.563 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3332 2.3982 2.4202 67.92% Gravity::make_radial_gravity() 21 0.2902 0.3084 0.328 9.21% Castro::initData() 1 0.04903 0.08778 0.1218 3.42% check_for_negative_density() 10 0.02751 0.05408 0.1194 3.35% Castro::estTimeStep() 21 0.02538 0.06368 0.1009 2.83% amrex::Copy() 193 0.06988 0.08205 0.09405 2.64% FabArray::setVal() 143 0.06464 0.07038 0.0761 2.14% FabArray::ParallelCopy_finish() 41 0.04388 0.05243 0.06361 1.79% Castro::reset_internal_energy(Fab) 1008 0.04477 0.04813 0.05324 1.49% Castro::normalize_species() 62 0.04167 0.04526 0.05161 1.45% FabArray::ParallelCopy_nowait() 41 0.03903 0.04146 0.04236 1.19% Amr::writePlotFile() 2 0.0373 0.03961 0.04013 1.13% FillPatchIterator::Initialize 41 0.02844 0.03341 0.03651 1.02% StateData::FillBoundary(geom) 41 0.02969 0.03331 0.03555 1.00% Gravity::interpolate_monopole_grav() 21 0.02688 0.02874 0.02959 0.83% Castro::construct_new_gravity_source() 10 0.02262 0.02373 0.0257 0.72% Castro::computeTemp() 63 0.01914 0.01997 0.02117 0.59% Castro::initialize_do_advance() 10 0.01218 0.01714 0.01886 0.53% Castro::initialize_advance() 10 0.01012 0.01276 0.01496 0.42% MultiFab::contains_nan() 20 0.00998 0.01153 0.01402 0.39% FabArray::Saxpy() 20 0.01069 0.0121 0.01309 0.37% VisMF::Write(FabArray) 2 0.009271 0.009731 0.01212 0.34% FabArray::setDomainBndry() 41 0.006908 0.01017 0.01142 0.32% Castro::construct_old_gravity_source() 10 0.00713 0.009008 0.009634 0.27% Castro::initMFs() 1 0.006355 0.006882 0.007777 0.22% Castro::construct_new_source() 50 0.0061 0.00636 0.00654 0.18% main() 1 0.003729 0.004002 0.004528 0.13% Gravity::get_old_grav_vector() 10 0.00156 0.002598 0.004095 0.11% Gravity::get_new_grav_vector() 11 0.002851 0.003424 0.003888 0.11% Amr::coarseTimeStep() 10 0.00199 0.002847 0.003729 0.10% Castro::finalize_do_advance() 10 0.0004735 0.0009207 0.0009978 0.03% AmrLevel::FillPatch() 41 0.0007639 0.0008559 0.000952 0.03% Amr::timeStep() 10 0.0001918 0.00025 0.0004255 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002931 0.0003205 0.000416 0.01% Castro::clean_state() 62 0.0001546 0.0001669 0.0001861 0.01% Castro::do_advance_ctu() 10 0.0001465 0.0001631 0.0001701 0.00% StateDataPhysBCFunct::() 41 9.473e-05 0.0001084 0.000128 0.00% FillPatchIterator::FillFromLevel0() 41 0.000105 0.0001127 0.0001238 0.00% Castro::Castro() 1 7.216e-05 8.813e-05 0.0001198 0.00% Amr::FinalizeInit() 1 3.077e-06 1.758e-05 0.0001104 0.00% Castro::do_old_sources() 10 8.244e-05 9.094e-05 0.0001039 0.00% FabArray::ParallelCopy() 41 8.222e-05 8.696e-05 9.338e-05 0.00% FillPatchSingleLevel 41 7.54e-05 8.283e-05 9.045e-05 0.00% Castro::construct_old_source() 50 5.975e-05 6.989e-05 7.616e-05 0.00% Castro::do_new_sources() 10 5.476e-05 6.068e-05 7.093e-05 0.00% Castro::subcycle_advance_ctu() 10 4.199e-05 5.272e-05 6.608e-05 0.00% Castro::construct_old_gravity() 10 3.254e-05 4.5e-05 6.178e-05 0.00% Castro::advance() 10 4.089e-05 4.899e-05 5.432e-05 0.00% Castro::construct_new_gravity() 10 3.187e-05 3.813e-05 5.328e-05 0.00% Castro::apply_source_to_state() 20 4.235e-05 4.613e-05 4.855e-05 0.00% Amr::defBaseLevel() 1 2.746e-05 3.597e-05 4.441e-05 0.00% Castro::expand_state() 10 2.117e-05 2.877e-05 4.23e-05 0.00% Castro::check_for_nan() 20 2.351e-05 2.775e-05 3.686e-05 0.00% Castro::post_timestep() 10 1.536e-05 2.091e-05 2.618e-05 0.00% Castro::post_init() 1 9.576e-06 1.181e-05 1.883e-05 0.00% Castro::computeNewDt() 9 7.842e-06 9.077e-06 1.151e-05 0.00% Amr::InitializeInit() 1 2.889e-06 3.838e-06 5.966e-06 0.00% Castro::computeInitialDt() 2 3.031e-06 3.699e-06 4.403e-06 0.00% Amr::init() 1 1.675e-06 2.177e-06 2.734e-06 0.00% Amr::initialInit() 1 1.503e-06 1.973e-06 2.554e-06 0.00% Other 261 0.01746 0.01965 0.02148 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.562 3.563 3.563 100.00% Amr::coarseTimeStep() 10 3.335 3.335 3.335 93.60% Amr::timeStep() 10 3.321 3.322 3.323 93.26% Castro::advance() 10 3.305 3.305 3.306 92.77% Castro::subcycle_advance_ctu() 10 3.224 3.226 3.231 90.67% Castro::do_advance_ctu() 10 3.224 3.226 3.231 90.67% Castro::construct_ctu_hydro_source() 10 2.47 2.474 2.477 69.51% Gravity::make_radial_gravity() 21 0.3065 0.3246 0.3421 9.60% Castro::construct_old_gravity() 10 0.1845 0.1995 0.2153 6.04% Gravity::get_old_grav_vector() 10 0.1833 0.1987 0.2146 6.02% Gravity::get_new_grav_vector() 11 0.2095 0.2115 0.2131 5.98% AmrLevel::FillPatch() 41 0.1953 0.2051 0.2114 5.93% Castro::construct_new_gravity() 10 0.187 0.1883 0.1898 5.33% Amr::init() 1 0.1852 0.1853 0.1853 5.20% Castro::initialize_do_advance() 10 0.1495 0.167 0.1817 5.10% FillPatchIterator::Initialize 41 0.1677 0.1713 0.1789 5.02% Amr::initialInit() 1 0.1703 0.1705 0.1707 4.79% Amr::InitializeInit() 1 0.06849 0.1084 0.1434 4.02% Amr::defBaseLevel() 1 0.06848 0.1084 0.1434 4.02% FillPatchIterator::FillFromLevel0() 41 0.1222 0.1277 0.1334 3.74% FillPatchSingleLevel 41 0.1221 0.1276 0.1332 3.74% Castro::clean_state() 62 0.113 0.1203 0.1286 3.61% Castro::initData() 1 0.0529 0.09183 0.1255 3.52% Castro::expand_state() 10 0.1012 0.1111 0.1208 3.39% check_for_negative_density() 10 0.02751 0.05408 0.1194 3.35% Castro::do_old_sources() 10 0.09577 0.1004 0.106 2.97% FabArray::ParallelCopy() 41 0.08638 0.09407 0.1028 2.89% Amr::FinalizeInit() 1 0.02728 0.06214 0.1018 2.86% Castro::estTimeStep() 21 0.02538 0.06368 0.1009 2.83% amrex::Copy() 193 0.06988 0.08205 0.09405 2.64% Castro::initialize_advance() 10 0.07113 0.07553 0.07808 2.19% Castro::computeInitialDt() 2 0.002323 0.03725 0.07702 2.16% FabArray::setVal() 143 0.06464 0.07038 0.0761 2.14% Castro::computeTemp() 63 0.06421 0.06842 0.07354 2.06% Castro::do_new_sources() 10 0.06038 0.06304 0.06603 1.85% FabArray::ParallelCopy_finish() 41 0.04388 0.05243 0.06361 1.79% Castro::reset_internal_energy(MultiFab) 63 0.04507 0.04845 0.05366 1.51% Castro::reset_internal_energy(Fab) 1008 0.04477 0.04813 0.05324 1.49% Amr::writePlotFile() 2 0.05235 0.05244 0.0526 1.48% Castro::normalize_species() 62 0.04167 0.04526 0.05161 1.45% FabArray::ParallelCopy_nowait() 41 0.03913 0.04155 0.04246 1.19% StateDataPhysBCFunct::() 41 0.0298 0.03342 0.03567 1.00% StateData::FillBoundary(geom) 41 0.02969 0.03331 0.03555 1.00% Castro::construct_new_source() 50 0.02904 0.03009 0.0318 0.89% Gravity::interpolate_monopole_grav() 21 0.02688 0.02874 0.02959 0.83% Castro::construct_new_gravity_source() 10 0.02262 0.02373 0.0257 0.72% Castro::post_init() 1 0.02384 0.02429 0.02462 0.69% Castro::finalize_do_advance() 10 0.01493 0.01823 0.02098 0.59% Castro::post_timestep() 10 0.01532 0.01634 0.01723 0.48% Castro::check_for_nan() 20 0.01 0.01155 0.01406 0.39% MultiFab::contains_nan() 20 0.00998 0.01153 0.01402 0.39% Castro::apply_source_to_state() 20 0.01073 0.01214 0.01314 0.37% FabArray::Saxpy() 20 0.01069 0.0121 0.01309 0.37% VisMF::Write(FabArray) 2 0.009271 0.009731 0.01212 0.34% Castro::Castro() 1 0.01011 0.01078 0.01162 0.33% FabArray::setDomainBndry() 41 0.006908 0.01017 0.01142 0.32% Castro::construct_old_source() 50 0.00719 0.009077 0.009707 0.27% Castro::construct_old_gravity_source() 10 0.00713 0.009008 0.009634 0.27% Castro::computeNewDt() 9 0.009109 0.009134 0.009149 0.26% Castro::initMFs() 1 0.006355 0.006882 0.007777 0.22% Other 261 0.02761 0.03061 0.03346 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 44 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-10-g85ae84ea8002) finalized