Initializing AMReX (24.07-13-g361f4ab839f2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-13-g361f4ab839f2) initialized Starting run at 16:37:48 UTC on 2024-07-09. Successfully read inputs file ... Castro git describe: 24.07-8-g2b29d50c8 AMReX git describe: 24.07-13-g361f4ab83 Microphysics git describe: 24.07-10-g0b1a2310 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014655692 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361965528 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347453471 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334288453 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.344099969 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.382211926 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.319618404 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.335862629 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314131094 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315920443 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313328382 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.050598473 seconds Ending run at 16:37:52 UTC on 2024-07-09. Run time = 3.624450625 Run time without initialization = 3.426775392 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.623 ... 3.624 ... 3.625 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3173 2.3672 2.4113 66.53% Gravity::make_radial_gravity() 21 0.295 0.3023 0.3172 8.75% check_for_negative_density() 10 0.05517 0.1014 0.1498 4.13% Castro::initData() 1 0.05335 0.08868 0.1334 3.68% Castro::estTimeStep() 21 0.0313 0.0803 0.1172 3.23% FabArray::ParallelCopy_finish() 41 0.04749 0.07003 0.1042 2.87% amrex::Copy() 193 0.0719 0.07959 0.08951 2.47% FabArray::setVal() 143 0.05926 0.07188 0.08556 2.36% Amr::writePlotFile() 2 0.04971 0.05276 0.05338 1.47% Castro::reset_internal_energy(Fab) 1008 0.04406 0.04687 0.04841 1.34% Castro::normalize_species() 62 0.0417 0.043 0.04566 1.26% FabArray::ParallelCopy_nowait() 41 0.03415 0.04061 0.04235 1.17% FillPatchIterator::Initialize 41 0.02672 0.03384 0.03805 1.05% StateData::FillBoundary(geom) 41 0.03104 0.03362 0.03597 0.99% Gravity::interpolate_monopole_grav() 21 0.02777 0.02898 0.02977 0.82% Castro::construct_new_gravity_source() 10 0.0226 0.0243 0.02669 0.74% Castro::initialize_do_advance() 10 0.0115 0.01877 0.02234 0.62% Castro::computeTemp() 63 0.01799 0.01935 0.01969 0.54% Amr::coarseTimeStep() 10 0.004117 0.01212 0.01487 0.41% Castro::initialize_advance() 10 0.01001 0.01185 0.01373 0.38% FabArray::Saxpy() 20 0.01128 0.01201 0.01273 0.35% VisMF::Write(FabArray) 2 0.009231 0.00986 0.01263 0.35% FabArray::setDomainBndry() 41 0.006426 0.01005 0.01229 0.34% MultiFab::contains_nan() 20 0.009678 0.0105 0.01201 0.33% Castro::construct_old_gravity_source() 10 0.00664 0.00878 0.009402 0.26% Castro::initMFs() 1 0.006452 0.00712 0.007707 0.21% Castro::construct_new_source() 50 0.005994 0.006237 0.006497 0.18% main() 1 0.003563 0.004037 0.004636 0.13% Gravity::get_new_grav_vector() 11 0.002874 0.003585 0.003914 0.11% Gravity::get_old_grav_vector() 10 0.001577 0.001977 0.002309 0.06% Castro::finalize_do_advance() 10 0.0004768 0.0009013 0.001077 0.03% AmrLevel::FillPatch() 41 0.0007175 0.0008717 0.000982 0.03% Amr::timeStep() 10 0.0001956 0.0002335 0.0004002 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002799 0.0003047 0.0003279 0.01% Castro::finalize_advance() 10 9.91e-05 0.0001291 0.0002625 0.01% Castro::do_advance_ctu() 10 0.0001519 0.000163 0.000182 0.01% Castro::clean_state() 62 0.0001514 0.0001588 0.0001701 0.00% Castro::do_old_sources() 10 8.674e-05 0.0001017 0.0001483 0.00% FillPatchIterator::FillFromLevel0() 41 9.82e-05 0.0001095 0.0001169 0.00% StateDataPhysBCFunct::() 41 9.751e-05 0.0001061 0.0001155 0.00% FabArray::ParallelCopy() 41 7.86e-05 8.443e-05 9.929e-05 0.00% Castro::Castro() 1 7.727e-05 8.612e-05 9.723e-05 0.00% Amr::FinalizeInit() 1 3.737e-06 1.573e-05 9.321e-05 0.00% Castro::construct_old_source() 50 6.152e-05 7.459e-05 9.119e-05 0.00% FillPatchSingleLevel 41 7.197e-05 7.93e-05 8.531e-05 0.00% Castro::do_new_sources() 10 5.538e-05 6.3e-05 7.068e-05 0.00% Amr::defBaseLevel() 1 3.985e-05 4.682e-05 5.547e-05 0.00% Castro::subcycle_advance_ctu() 10 4.024e-05 4.679e-05 5.22e-05 0.00% Castro::advance() 10 4.212e-05 4.68e-05 5.18e-05 0.00% Castro::apply_source_to_state() 20 4.1e-05 4.454e-05 4.77e-05 0.00% Castro::computeNewDt() 9 8.419e-06 2.204e-05 4.626e-05 0.00% Castro::construct_old_gravity() 10 3.599e-05 4.037e-05 4.418e-05 0.00% Castro::construct_new_gravity() 10 2.941e-05 3.527e-05 3.916e-05 0.00% Castro::post_timestep() 10 1.506e-05 1.975e-05 3.697e-05 0.00% Castro::expand_state() 10 1.912e-05 2.541e-05 3.604e-05 0.00% Castro::check_for_nan() 20 2.46e-05 2.561e-05 2.684e-05 0.00% Castro::post_init() 1 2.435e-06 7.002e-06 2.497e-05 0.00% Amr::InitializeInit() 1 3.023e-06 4.627e-06 7.049e-06 0.00% Castro::computeInitialDt() 2 2.979e-06 4.173e-06 6.198e-06 0.00% Amr::init() 1 1.877e-06 2.365e-06 3.62e-06 0.00% Amr::initialInit() 1 1.702e-06 2.138e-06 3.137e-06 0.00% Other 251 0.01597 0.0184 0.02022 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.623 3.624 3.624 100.00% Amr::coarseTimeStep() 10 3.372 3.372 3.372 93.02% Amr::timeStep() 10 3.341 3.344 3.352 92.48% Castro::advance() 10 3.325 3.328 3.333 91.97% Castro::subcycle_advance_ctu() 10 3.241 3.249 3.257 89.87% Castro::do_advance_ctu() 10 3.241 3.249 3.257 89.87% Castro::construct_ctu_hydro_source() 10 2.487 2.489 2.492 68.76% Gravity::make_radial_gravity() 21 0.3101 0.318 0.3307 9.12% AmrLevel::FillPatch() 41 0.2006 0.22 0.2308 6.37% Gravity::get_new_grav_vector() 11 0.2085 0.2101 0.2124 5.86% Castro::construct_old_gravity() 10 0.1904 0.1956 0.2068 5.71% Gravity::get_old_grav_vector() 10 0.1891 0.1946 0.2061 5.69% FillPatchIterator::Initialize 41 0.1705 0.1886 0.203 5.60% Amr::init() 1 0.1969 0.1971 0.1971 5.44% Castro::initialize_do_advance() 10 0.1701 0.1808 0.1916 5.29% Castro::construct_new_gravity() 10 0.1858 0.1869 0.1888 5.21% Amr::initialInit() 1 0.182 0.1821 0.1822 5.03% FillPatchIterator::FillFromLevel0() 41 0.1255 0.1447 0.1698 4.69% FillPatchSingleLevel 41 0.1254 0.1446 0.1697 4.68% Amr::InitializeInit() 1 0.07481 0.1094 0.1551 4.28% Amr::defBaseLevel() 1 0.0748 0.1094 0.1551 4.28% check_for_negative_density() 10 0.05517 0.1014 0.1498 4.13% FabArray::ParallelCopy() 41 0.08993 0.1108 0.1385 3.82% Castro::initData() 1 0.057 0.09241 0.1371 3.78% Castro::expand_state() 10 0.1113 0.1256 0.1356 3.74% Castro::clean_state() 62 0.111 0.1148 0.118 3.26% Castro::estTimeStep() 21 0.0313 0.0803 0.1172 3.23% Amr::FinalizeInit() 1 0.02696 0.0727 0.1072 2.96% FabArray::ParallelCopy_finish() 41 0.04749 0.07003 0.1042 2.87% Castro::do_old_sources() 10 0.09726 0.0995 0.1031 2.85% amrex::Copy() 193 0.0719 0.07959 0.08951 2.47% FabArray::setVal() 143 0.05926 0.07188 0.08556 2.36% Castro::initialize_advance() 10 0.06692 0.07494 0.08329 2.30% Castro::computeInitialDt() 2 0.002571 0.04827 0.08264 2.28% Castro::computeTemp() 63 0.06235 0.06653 0.0684 1.89% Castro::do_new_sources() 10 0.05896 0.06259 0.06766 1.87% Amr::writePlotFile() 2 0.0656 0.06569 0.06582 1.82% Castro::reset_internal_energy(MultiFab) 63 0.04437 0.04718 0.04871 1.34% Castro::reset_internal_energy(Fab) 1008 0.04406 0.04687 0.04841 1.34% Castro::normalize_species() 62 0.0417 0.043 0.04566 1.26% FabArray::ParallelCopy_nowait() 41 0.03425 0.04071 0.04245 1.17% StateDataPhysBCFunct::() 41 0.03115 0.03373 0.03607 1.00% StateData::FillBoundary(geom) 41 0.03104 0.03362 0.03597 0.99% Castro::construct_new_source() 50 0.02869 0.03054 0.0331 0.91% Gravity::interpolate_monopole_grav() 21 0.02777 0.02898 0.02977 0.82% Castro::construct_new_gravity_source() 10 0.0226 0.0243 0.02669 0.74% Castro::post_init() 1 0.02427 0.02433 0.02445 0.67% Castro::finalize_do_advance() 10 0.01367 0.01873 0.02308 0.64% Castro::post_timestep() 10 0.01464 0.01576 0.01841 0.51% Castro::computeNewDt() 9 0.01207 0.01423 0.01622 0.45% Castro::apply_source_to_state() 20 0.01132 0.01205 0.01278 0.35% FabArray::Saxpy() 20 0.01128 0.01201 0.01273 0.35% VisMF::Write(FabArray) 2 0.009231 0.00986 0.01263 0.35% FabArray::setDomainBndry() 41 0.006426 0.01005 0.01229 0.34% Castro::check_for_nan() 20 0.009705 0.01053 0.01204 0.33% MultiFab::contains_nan() 20 0.009678 0.0105 0.01201 0.33% Castro::Castro() 1 0.009764 0.01087 0.01171 0.32% Castro::construct_old_source() 50 0.006702 0.008855 0.009494 0.26% Castro::construct_old_gravity_source() 10 0.00664 0.00878 0.009402 0.26% Castro::finalize_advance() 10 0.003108 0.004008 0.009101 0.25% Castro::initMFs() 1 0.006452 0.00712 0.007707 0.21% Other 251 0.02289 0.02616 0.02862 0.79% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 39 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-13-g361f4ab839f2) finalized