Initializing AMReX (24.07-13-g361f4ab839f2)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-13-g361f4ab839f2) initialized Starting run at 05:38:58 UTC on 2024-07-09. Successfully read inputs file ... Castro git describe: 24.07-3-g79841a784 AMReX git describe: 24.07-13-g361f4ab83 Microphysics git describe: 24.07-9-ga3bc2465 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016049177 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355317902 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.367101958 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333051369 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.348332264 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359863129 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.31175183 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312032519 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313375399 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313554373 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315811169 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008157621 seconds Ending run at 05:39:02 UTC on 2024-07-09. Run time = 3.535485973 Run time without initialization = 3.343391142 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.535 ... 3.535 ... 3.536 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2490 2.3710 2.4180 68.39% Gravity::make_radial_gravity() 21 0.2931 0.3002 0.3123 8.83% check_for_negative_density() 10 0.03084 0.08007 0.2049 5.80% Castro::initData() 1 0.04933 0.0889 0.1245 3.52% Castro::estTimeStep() 21 0.03537 0.06989 0.1125 3.18% FabArray::ParallelCopy_finish() 41 0.03712 0.06259 0.09467 2.68% amrex::Copy() 193 0.07188 0.0788 0.0858 2.43% FabArray::setVal() 143 0.06296 0.06981 0.08084 2.29% Castro::reset_internal_energy(Fab) 1008 0.04433 0.04616 0.04825 1.36% Castro::normalize_species() 62 0.04181 0.04248 0.04408 1.25% FabArray::ParallelCopy_nowait() 41 0.0354 0.04011 0.04125 1.17% FillPatchIterator::Initialize 41 0.02886 0.03434 0.0386 1.09% StateData::FillBoundary(geom) 41 0.03015 0.03182 0.03415 0.97% Gravity::interpolate_monopole_grav() 21 0.0278 0.02899 0.02981 0.84% Castro::construct_new_gravity_source() 10 0.0211 0.02328 0.02489 0.70% Castro::initialize_do_advance() 10 0.01373 0.01882 0.02252 0.64% Castro::computeTemp() 63 0.01731 0.01897 0.02019 0.57% Amr::writePlotFile() 2 0.008967 0.0116 0.01417 0.40% FabArray::Saxpy() 20 0.01005 0.01204 0.01308 0.37% VisMF::Write(FabArray) 2 0.008531 0.009801 0.01276 0.36% Castro::initialize_advance() 10 0.00546 0.009775 0.01244 0.35% FabArray::setDomainBndry() 41 0.00706 0.009735 0.01186 0.34% MultiFab::contains_nan() 20 0.01008 0.01091 0.01168 0.33% Amr::coarseTimeStep() 10 0.002648 0.009837 0.01153 0.33% Castro::construct_old_gravity_source() 10 0.006519 0.008766 0.009331 0.26% Castro::initMFs() 1 0.006613 0.007137 0.008114 0.23% Castro::construct_new_source() 50 0.005766 0.006135 0.006472 0.18% main() 1 0.00379 0.004043 0.004169 0.12% Gravity::get_new_grav_vector() 11 0.002883 0.003562 0.00398 0.11% Gravity::get_old_grav_vector() 10 0.001794 0.0021 0.002632 0.07% AmrLevel::FillPatch() 41 0.0007696 0.0008627 0.001059 0.03% Castro::finalize_do_advance() 10 0.0004746 0.0009552 0.001045 0.03% Amr::timeStep() 10 0.0001665 0.0002248 0.0004903 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002767 0.0002861 0.000292 0.01% Amr::defBaseLevel() 1 3.776e-05 6.429e-05 0.0001979 0.01% Castro::finalize_advance() 10 9.638e-05 0.0001179 0.0001909 0.01% Castro::do_advance_ctu() 10 0.0001345 0.0001494 0.0001692 0.00% Castro::clean_state() 62 0.0001422 0.0001551 0.0001676 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001053 0.0001104 0.0001185 0.00% Castro::Castro() 1 7.747e-05 9.14e-05 0.0001133 0.00% StateDataPhysBCFunct::() 41 9.768e-05 0.0001022 0.0001078 0.00% Castro::do_old_sources() 10 7.775e-05 8.729e-05 9.475e-05 0.00% Amr::FinalizeInit() 1 3.55e-06 1.489e-05 9.006e-05 0.00% FillPatchSingleLevel 41 7.105e-05 7.611e-05 8.179e-05 0.00% FabArray::ParallelCopy() 41 6.864e-05 7.579e-05 7.957e-05 0.00% Castro::construct_old_source() 50 5.138e-05 6.708e-05 7.838e-05 0.00% Castro::do_new_sources() 10 5.266e-05 5.982e-05 6.686e-05 0.00% Castro::advance() 10 4.41e-05 4.792e-05 5.24e-05 0.00% Castro::apply_source_to_state() 20 3.974e-05 4.475e-05 5.01e-05 0.00% Castro::subcycle_advance_ctu() 10 3.678e-05 4.3e-05 4.826e-05 0.00% Castro::construct_old_gravity() 10 3.421e-05 4.13e-05 4.726e-05 0.00% Castro::computeNewDt() 9 8.098e-06 2.7e-05 4.303e-05 0.00% Castro::construct_new_gravity() 10 3.333e-05 3.566e-05 3.941e-05 0.00% Castro::expand_state() 10 2.283e-05 2.603e-05 2.813e-05 0.00% Castro::check_for_nan() 20 2.067e-05 2.383e-05 2.725e-05 0.00% Castro::post_timestep() 10 1.392e-05 1.767e-05 2.394e-05 0.00% Castro::post_init() 1 9.167e-06 1.264e-05 1.595e-05 0.00% Amr::init() 1 1.855e-06 2.99e-06 7.059e-06 0.00% Amr::InitializeInit() 1 2.838e-06 3.741e-06 5.672e-06 0.00% Castro::computeInitialDt() 2 3.485e-06 4.112e-06 4.522e-06 0.00% Amr::initialInit() 1 1.476e-06 1.953e-06 2.565e-06 0.00% Other 251 0.0175 0.01988 0.02157 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.535 3.535 3.536 100.00% Amr::coarseTimeStep() 10 3.331 3.331 3.331 94.22% Amr::timeStep() 10 3.304 3.306 3.313 93.71% Castro::advance() 10 3.289 3.29 3.294 93.17% Castro::subcycle_advance_ctu() 10 3.206 3.215 3.224 91.19% Castro::do_advance_ctu() 10 3.206 3.215 3.224 91.18% Castro::construct_ctu_hydro_source() 10 2.469 2.472 2.474 69.99% Gravity::make_radial_gravity() 21 0.3093 0.3164 0.3256 9.21% AmrLevel::FillPatch() 41 0.1909 0.2105 0.2244 6.35% Gravity::get_new_grav_vector() 11 0.2138 0.2149 0.2165 6.12% check_for_negative_density() 10 0.03084 0.08007 0.2049 5.80% FillPatchIterator::Initialize 41 0.1582 0.1791 0.1966 5.56% Castro::construct_old_gravity() 10 0.183 0.1879 0.1948 5.51% Gravity::get_old_grav_vector() 10 0.1818 0.1869 0.1937 5.48% Amr::init() 1 0.1914 0.1915 0.1915 5.42% Castro::construct_new_gravity() 10 0.1881 0.189 0.19 5.37% Castro::initialize_do_advance() 10 0.1667 0.1765 0.1835 5.19% Amr::initialInit() 1 0.1751 0.1757 0.1763 4.99% FillPatchIterator::FillFromLevel0() 41 0.1099 0.135 0.1607 4.54% FillPatchSingleLevel 41 0.1098 0.1349 0.1606 4.54% Amr::InitializeInit() 1 0.06884 0.11 0.1462 4.14% Amr::defBaseLevel() 1 0.06884 0.11 0.1462 4.14% Castro::expand_state() 10 0.1075 0.1214 0.1304 3.69% FabArray::ParallelCopy() 41 0.07758 0.1029 0.1303 3.68% Castro::initData() 1 0.05312 0.09267 0.1279 3.62% Castro::clean_state() 62 0.1109 0.1144 0.1171 3.31% Castro::estTimeStep() 21 0.03537 0.06989 0.1125 3.18% Amr::FinalizeInit() 1 0.0298 0.0657 0.1063 3.01% Castro::do_old_sources() 10 0.09327 0.09485 0.09655 2.73% FabArray::ParallelCopy_finish() 41 0.03712 0.06259 0.09467 2.68% amrex::Copy() 193 0.07188 0.0788 0.0858 2.43% FabArray::setVal() 143 0.06296 0.06981 0.08084 2.29% Castro::computeInitialDt() 2 0.002371 0.03858 0.07959 2.25% Castro::initialize_advance() 10 0.06125 0.07046 0.07954 2.25% Castro::computeTemp() 63 0.062 0.06542 0.06874 1.94% Castro::do_new_sources() 10 0.05581 0.06177 0.06473 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04462 0.04644 0.04855 1.37% Castro::reset_internal_energy(Fab) 1008 0.04433 0.04616 0.04825 1.36% Castro::normalize_species() 62 0.04181 0.04248 0.04408 1.25% FabArray::ParallelCopy_nowait() 41 0.03551 0.04021 0.04135 1.17% StateDataPhysBCFunct::() 41 0.03025 0.03193 0.03425 0.97% StateData::FillBoundary(geom) 41 0.03015 0.03182 0.03415 0.97% Castro::construct_new_source() 50 0.02686 0.02942 0.03066 0.87% Gravity::interpolate_monopole_grav() 21 0.0278 0.02899 0.02981 0.84% Castro::post_init() 1 0.02618 0.02678 0.02743 0.78% Castro::construct_new_gravity_source() 10 0.0211 0.02328 0.02489 0.70% Amr::writePlotFile() 2 0.02343 0.02403 0.02469 0.70% Castro::finalize_do_advance() 10 0.01504 0.0181 0.02282 0.65% Castro::post_timestep() 10 0.01522 0.01602 0.0186 0.53% Castro::computeNewDt() 9 0.01401 0.0142 0.01436 0.41% Castro::apply_source_to_state() 20 0.01009 0.01209 0.01313 0.37% FabArray::Saxpy() 20 0.01005 0.01204 0.01308 0.37% VisMF::Write(FabArray) 2 0.008531 0.009801 0.01276 0.36% Castro::Castro() 1 0.01003 0.01105 0.01216 0.34% FabArray::setDomainBndry() 41 0.00706 0.009735 0.01186 0.34% Castro::check_for_nan() 20 0.0101 0.01094 0.0117 0.33% MultiFab::contains_nan() 20 0.01008 0.01091 0.01168 0.33% Castro::construct_old_source() 50 0.00657 0.008833 0.00941 0.27% Castro::construct_old_gravity_source() 10 0.006519 0.008766 0.009331 0.26% Castro::finalize_advance() 10 0.003024 0.003942 0.009004 0.25% Castro::initMFs() 1 0.006613 0.007137 0.008114 0.23% Other 251 0.02471 0.02782 0.03021 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 40 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-13-g361f4ab839f2) finalized