Initializing AMReX (24.07-15-gcca5aade6929)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-15-gcca5aade6929) initialized Starting run at 14:57:08 UTC on 2024-07-10. Successfully read inputs file ... Castro git describe: 24.07-15-g6a9b6e7c5 AMReX git describe: 24.07-15-gcca5aade6 Microphysics git describe: 24.07-10-g0b1a2310 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01485798 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358508565 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.366965867 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.359493142 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.367567756 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36268607 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.322346447 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318333742 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318689189 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317651933 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318063301 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007494467 seconds Ending run at 14:57:12 UTC on 2024-07-10. Run time = 3.605098621 Run time without initialization = 3.422788469 Average number of zones advanced per microsecond: 0.766 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.605 ... 3.605 ... 3.605 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3585 2.4309 2.4926 69.14% Gravity::make_radial_gravity() 21 0.2919 0.2964 0.3075 8.53% check_for_negative_density() 10 0.03147 0.09372 0.1668 4.63% Castro::initData() 1 0.04856 0.08615 0.1192 3.31% Castro::estTimeStep() 21 0.02352 0.06556 0.1068 2.96% amrex::Copy() 193 0.07636 0.0812 0.08705 2.41% FabArray::setVal() 143 0.06598 0.07411 0.08574 2.38% FabArray::ParallelCopy_finish() 41 0.05057 0.0627 0.07311 2.03% Castro::reset_internal_energy(Fab) 1008 0.0449 0.04655 0.04775 1.32% Castro::normalize_species() 62 0.04122 0.0423 0.04449 1.23% FabArray::ParallelCopy_nowait() 41 0.03937 0.04127 0.0422 1.17% FillPatchIterator::Initialize 41 0.02959 0.03465 0.03672 1.02% StateData::FillBoundary(geom) 41 0.03108 0.03282 0.03504 0.97% Gravity::interpolate_monopole_grav() 21 0.02816 0.02965 0.03094 0.86% Castro::construct_new_gravity_source() 10 0.02388 0.026 0.02909 0.81% Castro::initialize_do_advance() 10 0.01737 0.01884 0.02095 0.58% Castro::computeTemp() 63 0.01853 0.01935 0.01964 0.54% FabArray::Saxpy() 20 0.01165 0.01303 0.01416 0.39% Castro::initialize_advance() 10 0.009607 0.01147 0.01367 0.38% VisMF::Write(FabArray) 2 0.009292 0.00983 0.01221 0.34% MultiFab::contains_nan() 20 0.01051 0.01124 0.01199 0.33% FabArray::setDomainBndry() 41 0.007954 0.00986 0.01074 0.30% Amr::writePlotFile() 2 0.007519 0.009868 0.01037 0.29% Castro::construct_old_gravity_source() 10 0.008768 0.009565 0.01006 0.28% Castro::initMFs() 1 0.006577 0.007054 0.007913 0.22% Castro::construct_new_source() 50 0.006057 0.006165 0.006425 0.18% main() 1 0.003646 0.004032 0.004182 0.12% Gravity::get_new_grav_vector() 11 0.003023 0.003557 0.003764 0.10% Amr::coarseTimeStep() 10 0.001331 0.002291 0.003248 0.09% Gravity::get_old_grav_vector() 10 0.001525 0.002015 0.002314 0.06% Castro::finalize_do_advance() 10 0.001076 0.00113 0.001274 0.04% AmrLevel::FillPatch() 41 0.0008629 0.0009885 0.001229 0.03% Amr::timeStep() 10 0.0001589 0.0002235 0.0004061 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002778 0.0002937 0.0003126 0.01% Castro::do_advance_ctu() 10 0.0001437 0.0001602 0.0001804 0.01% Castro::clean_state() 62 0.0001301 0.0001505 0.0001653 0.00% Castro::Castro() 1 8.154e-05 0.0001018 0.0001302 0.00% FillPatchIterator::FillFromLevel0() 41 9.87e-05 0.0001085 0.0001236 0.00% Amr::FinalizeInit() 1 4.02e-06 1.955e-05 0.0001195 0.00% StateDataPhysBCFunct::() 41 0.0001009 0.0001074 0.0001099 0.00% Castro::do_old_sources() 10 8.025e-05 9.263e-05 0.000102 0.00% Castro::construct_old_source() 50 6.143e-05 7.526e-05 8.97e-05 0.00% FillPatchSingleLevel 41 6.938e-05 7.698e-05 8.69e-05 0.00% FabArray::ParallelCopy() 41 7.654e-05 8.042e-05 8.378e-05 0.00% Castro::do_new_sources() 10 5.824e-05 6.299e-05 7.146e-05 0.00% Castro::subcycle_advance_ctu() 10 4.282e-05 5.172e-05 6.939e-05 0.00% Castro::advance() 10 4.265e-05 4.773e-05 6.13e-05 0.00% Amr::defBaseLevel() 1 4.278e-05 4.637e-05 5.278e-05 0.00% Castro::apply_source_to_state() 20 3.931e-05 4.583e-05 5.18e-05 0.00% Castro::construct_new_gravity() 10 3.084e-05 3.549e-05 4.416e-05 0.00% Castro::construct_old_gravity() 10 3.524e-05 3.976e-05 4.318e-05 0.00% Castro::expand_state() 10 1.809e-05 2.36e-05 3.411e-05 0.00% Castro::post_timestep() 10 1.434e-05 2.113e-05 2.6e-05 0.00% Castro::check_for_nan() 20 2.197e-05 2.332e-05 2.471e-05 0.00% Castro::computeNewDt() 9 7.354e-06 9.34e-06 1.264e-05 0.00% Amr::initialInit() 1 1.739e-06 2.807e-06 8.106e-06 0.00% Amr::InitializeInit() 1 3.064e-06 3.771e-06 6.683e-06 0.00% Castro::post_init() 1 2.277e-06 3.518e-06 5.019e-06 0.00% Castro::computeInitialDt() 2 3.127e-06 3.65e-06 4.288e-06 0.00% Amr::init() 1 1.992e-06 2.371e-06 2.715e-06 0.00% Other 261 0.01627 0.01879 0.02027 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.605 3.605 3.605 100.00% Amr::coarseTimeStep() 10 3.411 3.411 3.411 94.62% Amr::timeStep() 10 3.398 3.399 3.4 94.30% Castro::advance() 10 3.383 3.383 3.384 93.86% Castro::subcycle_advance_ctu() 10 3.296 3.305 3.311 91.84% Castro::do_advance_ctu() 10 3.296 3.305 3.311 91.84% Castro::construct_ctu_hydro_source() 10 2.542 2.546 2.549 70.69% Gravity::make_radial_gravity() 21 0.3083 0.3131 0.3228 8.96% AmrLevel::FillPatch() 41 0.1932 0.2148 0.2312 6.41% Gravity::get_new_grav_vector() 11 0.2175 0.2187 0.2203 6.11% Castro::construct_new_gravity() 10 0.1948 0.1957 0.1969 5.46% FillPatchIterator::Initialize 41 0.1632 0.1818 0.1957 5.43% Castro::construct_old_gravity() 10 0.1798 0.1845 0.1931 5.36% Gravity::get_old_grav_vector() 10 0.179 0.1836 0.1919 5.32% Castro::initialize_do_advance() 10 0.164 0.1756 0.1858 5.15% Amr::init() 1 0.1815 0.1817 0.1818 5.04% check_for_negative_density() 10 0.03147 0.09372 0.1668 4.63% Amr::initialInit() 1 0.1664 0.1667 0.1668 4.63% FillPatchIterator::FillFromLevel0() 41 0.1248 0.1373 0.1496 4.15% FillPatchSingleLevel 41 0.1247 0.1372 0.1494 4.15% Amr::InitializeInit() 1 0.0697 0.1074 0.1401 3.89% Amr::defBaseLevel() 1 0.06969 0.1074 0.1401 3.89% Castro::expand_state() 10 0.1066 0.1203 0.1326 3.68% Castro::initData() 1 0.05231 0.08996 0.1229 3.41% Castro::clean_state() 62 0.1099 0.1137 0.1162 3.22% FabArray::ParallelCopy() 41 0.0923 0.1042 0.1155 3.20% Castro::estTimeStep() 21 0.02352 0.06556 0.1068 2.96% Castro::do_old_sources() 10 0.09227 0.09619 0.09878 2.74% Amr::FinalizeInit() 1 0.02659 0.05932 0.09672 2.68% amrex::Copy() 193 0.07636 0.0812 0.08705 2.41% FabArray::setVal() 143 0.06598 0.07411 0.08574 2.38% Castro::initialize_advance() 10 0.06841 0.07448 0.08385 2.33% Castro::do_new_sources() 10 0.06261 0.06816 0.07666 2.13% FabArray::ParallelCopy_finish() 41 0.05057 0.0627 0.07311 2.03% Castro::computeInitialDt() 2 0.002218 0.03493 0.07236 2.01% Castro::computeTemp() 63 0.06371 0.0662 0.06762 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04517 0.04685 0.04807 1.33% Castro::reset_internal_energy(Fab) 1008 0.0449 0.04655 0.04775 1.32% Castro::normalize_species() 62 0.04122 0.0423 0.04449 1.23% FabArray::ParallelCopy_nowait() 41 0.03948 0.04137 0.04229 1.17% Castro::construct_new_source() 50 0.03013 0.03217 0.03551 0.99% StateDataPhysBCFunct::() 41 0.03119 0.03292 0.03514 0.97% StateData::FillBoundary(geom) 41 0.03108 0.03282 0.03504 0.97% Gravity::interpolate_monopole_grav() 21 0.02816 0.02965 0.03094 0.86% Castro::finalize_do_advance() 10 0.01348 0.02285 0.0291 0.81% Castro::construct_new_gravity_source() 10 0.02388 0.026 0.02909 0.81% Castro::post_init() 1 0.02373 0.02392 0.02403 0.67% Amr::writePlotFile() 2 0.02253 0.02263 0.02281 0.63% Castro::post_timestep() 10 0.01493 0.01544 0.01594 0.44% Castro::apply_source_to_state() 20 0.01169 0.01307 0.01421 0.39% FabArray::Saxpy() 20 0.01165 0.01303 0.01416 0.39% VisMF::Write(FabArray) 2 0.009292 0.00983 0.01221 0.34% Castro::Castro() 1 0.01031 0.01112 0.01209 0.34% Castro::check_for_nan() 20 0.01054 0.01126 0.01201 0.33% MultiFab::contains_nan() 20 0.01051 0.01124 0.01199 0.33% FabArray::setDomainBndry() 41 0.007954 0.00986 0.01074 0.30% Castro::construct_old_source() 50 0.00883 0.009641 0.01015 0.28% Castro::construct_old_gravity_source() 10 0.008768 0.009565 0.01006 0.28% Castro::computeNewDt() 9 0.008914 0.008922 0.00893 0.25% Castro::initMFs() 1 0.006577 0.007054 0.007913 0.22% Other 261 0.02654 0.03025 0.03291 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 38 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-15-gcca5aade6929) finalized