Initializing AMReX (24.07-15-gcca5aade6929)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-15-gcca5aade6929) initialized Starting run at 23:54:01 UTC on 2024-07-10. Successfully read inputs file ... Castro git describe: 24.07-13-g1b429707d AMReX git describe: 24.07-15-gcca5aade6 Microphysics git describe: 24.07-10-g0b1a2310 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014248938 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363723784 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.380051673 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.343686458 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.360788911 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.358565696 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.321363476 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.322991724 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.324771057 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.322508911 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.322574954 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007526347 seconds Ending run at 23:54:04 UTC on 2024-07-10. Run time = 3.622405191 Run time without initialization = 3.433496735 Average number of zones advanced per microsecond: 0.763 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.622 ... 3.622 ... 3.622 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3534 2.4462 2.4956 68.89% Gravity::make_radial_gravity() 21 0.3022 0.313 0.3309 9.14% check_for_negative_density() 10 0.0398 0.09466 0.1907 5.26% Castro::initData() 1 0.0502 0.09064 0.1232 3.40% Castro::estTimeStep() 21 0.02693 0.0641 0.1055 2.91% FabArray::ParallelCopy_finish() 41 0.04177 0.05669 0.08906 2.46% amrex::Copy() 193 0.06162 0.07649 0.0822 2.27% FabArray::setVal() 143 0.05372 0.06893 0.07998 2.21% Castro::normalize_species() 62 0.0419 0.04575 0.05587 1.54% Castro::reset_internal_energy(Fab) 1008 0.04653 0.04796 0.04913 1.36% FabArray::ParallelCopy_nowait() 41 0.0368 0.04031 0.04155 1.15% StateData::FillBoundary(geom) 41 0.03042 0.03394 0.04138 1.14% FillPatchIterator::Initialize 41 0.02904 0.03166 0.03394 0.94% Gravity::interpolate_monopole_grav() 21 0.02753 0.02947 0.03035 0.84% Castro::construct_new_gravity_source() 10 0.02117 0.02479 0.02764 0.76% Castro::computeTemp() 63 0.01958 0.02092 0.02399 0.66% Castro::initialize_do_advance() 10 0.01168 0.01688 0.01999 0.55% VisMF::Write(FabArray) 2 0.009157 0.00973 0.01301 0.36% FabArray::Saxpy() 20 0.01024 0.01212 0.0129 0.36% Castro::initialize_advance() 10 0.005492 0.01004 0.01276 0.35% FabArray::setDomainBndry() 41 0.008317 0.01064 0.01257 0.35% MultiFab::contains_nan() 20 0.009361 0.01036 0.01191 0.33% Amr::writePlotFile() 2 0.007291 0.009196 0.009688 0.27% Castro::construct_old_gravity_source() 10 0.006323 0.008773 0.009454 0.26% Castro::initMFs() 1 0.006648 0.007193 0.007428 0.21% Castro::construct_new_source() 50 0.00548 0.006287 0.006551 0.18% Gravity::get_new_grav_vector() 11 0.00269 0.00381 0.005574 0.15% Amr::coarseTimeStep() 10 0.001778 0.003245 0.004358 0.12% main() 1 0.003742 0.003956 0.004195 0.12% Castro::construct_new_gravity() 10 3.083e-05 0.0003199 0.002284 0.06% Gravity::get_old_grav_vector() 10 0.00151 0.002008 0.002276 0.06% Castro::finalize_do_advance() 10 0.0004524 0.0009601 0.001075 0.03% AmrLevel::FillPatch() 41 0.0006698 0.0007835 0.0008579 0.02% Amr::timeStep() 10 0.0001638 0.0002124 0.0004071 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002881 0.0003068 0.0003322 0.01% Castro::do_advance_ctu() 10 0.0001378 0.000155 0.0001819 0.01% Castro::clean_state() 62 0.0001461 0.0001559 0.0001755 0.00% Castro::Castro() 1 8.973e-05 0.0001121 0.0001345 0.00% StateDataPhysBCFunct::() 41 9.467e-05 0.0001037 0.0001167 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001 0.000106 0.0001143 0.00% Castro::construct_old_source() 50 6.665e-05 8.144e-05 9.851e-05 0.00% Castro::do_old_sources() 10 7.711e-05 9.033e-05 9.666e-05 0.00% Castro::subcycle_advance_ctu() 10 3.938e-05 5.379e-05 9.254e-05 0.00% Amr::FinalizeInit() 1 3.766e-06 1.519e-05 8.54e-05 0.00% FabArray::ParallelCopy() 41 7.116e-05 7.687e-05 8.46e-05 0.00% FillPatchSingleLevel 41 6.953e-05 7.306e-05 7.66e-05 0.00% Castro::do_new_sources() 10 5.021e-05 6.085e-05 6.638e-05 0.00% Castro::advance() 10 3.894e-05 4.779e-05 6.43e-05 0.00% Amr::defBaseLevel() 1 4.118e-05 5.771e-05 6.305e-05 0.00% Castro::check_for_nan() 20 2.118e-05 3.074e-05 5.489e-05 0.00% Castro::construct_old_gravity() 10 3.367e-05 3.89e-05 4.775e-05 0.00% Castro::apply_source_to_state() 20 4.005e-05 4.364e-05 4.674e-05 0.00% Castro::expand_state() 10 2.085e-05 2.4e-05 3.285e-05 0.00% Castro::post_timestep() 10 1.432e-05 1.805e-05 2.075e-05 0.00% Castro::computeNewDt() 9 8.035e-06 9.563e-06 1.23e-05 0.00% Castro::post_init() 1 2.686e-06 5.767e-06 1.053e-05 0.00% Amr::InitializeInit() 1 2.882e-06 3.748e-06 6.464e-06 0.00% Castro::computeInitialDt() 2 2.634e-06 3.812e-06 5.579e-06 0.00% Amr::init() 1 1.783e-06 2.262e-06 3.623e-06 0.00% Amr::initialInit() 1 1.236e-06 1.711e-06 2.142e-06 0.00% Other 261 0.0159 0.01852 0.01958 0.54% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.622 3.622 3.622 100.00% Amr::coarseTimeStep() 10 3.422 3.422 3.422 94.46% Amr::timeStep() 10 3.407 3.408 3.409 94.12% Castro::advance() 10 3.39 3.391 3.392 93.65% Castro::subcycle_advance_ctu() 10 3.309 3.318 3.337 92.11% Castro::do_advance_ctu() 10 3.309 3.318 3.337 92.11% Castro::construct_ctu_hydro_source() 10 2.559 2.563 2.568 70.89% Gravity::make_radial_gravity() 21 0.3179 0.3294 0.3436 9.49% Gravity::get_new_grav_vector() 11 0.2179 0.2211 0.2243 6.19% AmrLevel::FillPatch() 41 0.186 0.2042 0.2231 6.16% Castro::construct_old_gravity() 10 0.187 0.1927 0.2029 5.60% Gravity::get_old_grav_vector() 10 0.1863 0.192 0.2018 5.57% Castro::construct_new_gravity() 10 0.1933 0.1967 0.1996 5.51% FillPatchIterator::Initialize 41 0.1576 0.1737 0.1977 5.46% check_for_negative_density() 10 0.0398 0.09466 0.1907 5.26% Amr::init() 1 0.1881 0.1883 0.1883 5.20% Castro::initialize_do_advance() 10 0.1587 0.1699 0.1788 4.94% Amr::initialInit() 1 0.1736 0.1743 0.1744 4.81% FillPatchIterator::FillFromLevel0() 41 0.1189 0.1314 0.1568 4.33% FillPatchSingleLevel 41 0.1188 0.1313 0.1566 4.32% Amr::InitializeInit() 1 0.07279 0.113 0.1456 4.02% Amr::defBaseLevel() 1 0.07278 0.113 0.1456 4.02% Castro::expand_state() 10 0.1038 0.117 0.1325 3.66% Castro::clean_state() 62 0.114 0.1201 0.1309 3.61% Castro::initData() 1 0.05441 0.09485 0.1271 3.51% FabArray::ParallelCopy() 41 0.08235 0.09717 0.126 3.48% Castro::estTimeStep() 21 0.02693 0.0641 0.1055 2.91% Amr::FinalizeInit() 1 0.02876 0.06121 0.1015 2.80% Castro::do_old_sources() 10 0.08972 0.09315 0.09559 2.64% FabArray::ParallelCopy_finish() 41 0.04177 0.05669 0.08906 2.46% amrex::Copy() 193 0.06162 0.07649 0.0822 2.27% FabArray::setVal() 143 0.05372 0.06893 0.07998 2.21% Castro::initialize_advance() 10 0.05036 0.06986 0.07904 2.18% Castro::computeInitialDt() 2 0.002326 0.03484 0.07512 2.07% Castro::computeTemp() 63 0.06659 0.06919 0.0732 2.02% Castro::do_new_sources() 10 0.05537 0.066 0.07314 2.02% Castro::normalize_species() 62 0.0419 0.04575 0.05587 1.54% Castro::reset_internal_energy(MultiFab) 63 0.04682 0.04827 0.04942 1.36% Castro::reset_internal_energy(Fab) 1008 0.04653 0.04796 0.04913 1.36% FabArray::ParallelCopy_nowait() 41 0.0369 0.04041 0.04165 1.15% StateDataPhysBCFunct::() 41 0.03053 0.03404 0.0415 1.15% StateData::FillBoundary(geom) 41 0.03042 0.03394 0.04138 1.14% Castro::construct_new_source() 50 0.02665 0.03108 0.03403 0.94% Castro::finalize_do_advance() 10 0.01353 0.0207 0.03154 0.87% Gravity::interpolate_monopole_grav() 21 0.02753 0.02947 0.03035 0.84% Castro::construct_new_gravity_source() 10 0.02117 0.02479 0.02764 0.76% Castro::post_init() 1 0.02511 0.02575 0.02612 0.72% Amr::writePlotFile() 2 0.02151 0.02163 0.02206 0.61% Castro::post_timestep() 10 0.01553 0.01642 0.01829 0.50% VisMF::Write(FabArray) 2 0.009157 0.00973 0.01301 0.36% Castro::apply_source_to_state() 20 0.01029 0.01216 0.01295 0.36% FabArray::Saxpy() 20 0.01024 0.01212 0.0129 0.36% FabArray::setDomainBndry() 41 0.008317 0.01064 0.01257 0.35% Castro::Castro() 1 0.01054 0.01197 0.01238 0.34% Castro::check_for_nan() 20 0.009397 0.01039 0.01196 0.33% MultiFab::contains_nan() 20 0.009361 0.01036 0.01191 0.33% Castro::computeNewDt() 9 0.009521 0.009537 0.009559 0.26% Castro::construct_old_source() 50 0.00639 0.008855 0.009534 0.26% Castro::construct_old_gravity_source() 10 0.006323 0.008773 0.009454 0.26% Castro::initMFs() 1 0.006648 0.007193 0.007428 0.21% Other 261 0.02638 0.03007 0.0324 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 45 B 53 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-15-gcca5aade6929) finalized