Initializing AMReX (24.07-15-gcca5aade6929)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-15-gcca5aade6929) initialized Starting run at 05:38:05 UTC on 2024-07-10. Successfully read inputs file ... Castro git describe: 24.07-9-gdd89b8efb AMReX git describe: 24.07-15-gcca5aade6 Microphysics git describe: 24.07-10-g0b1a2310 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01442305 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.353130474 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.356636676 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329849043 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336395859 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.38306708 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.311971652 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309481374 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310930749 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309823262 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310333641 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007461556 seconds Ending run at 05:38:08 UTC on 2024-07-10. Run time = 3.522329512 Run time without initialization = 3.324125076 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.522 ... 3.522 ... 3.522 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2424 2.3392 2.3904 67.86% Gravity::make_radial_gravity() 21 0.2908 0.2985 0.3111 8.83% check_for_negative_density() 10 0.04486 0.09674 0.1932 5.49% Castro::initData() 1 0.05695 0.09184 0.1349 3.83% Castro::estTimeStep() 21 0.02732 0.07626 0.1152 3.27% FabArray::ParallelCopy_finish() 41 0.03585 0.06753 0.1146 3.25% FabArray::setVal() 143 0.05317 0.06894 0.08627 2.45% amrex::Copy() 193 0.06171 0.07731 0.0853 2.42% Castro::reset_internal_energy(Fab) 1008 0.04476 0.04642 0.04783 1.36% Castro::normalize_species() 62 0.04104 0.04202 0.04342 1.23% FabArray::ParallelCopy_nowait() 41 0.03361 0.03975 0.04285 1.22% FillPatchIterator::Initialize 41 0.02664 0.03207 0.03669 1.04% StateData::FillBoundary(geom) 41 0.03022 0.03282 0.03463 0.98% Gravity::interpolate_monopole_grav() 21 0.02709 0.02876 0.02941 0.84% Castro::computeTemp() 63 0.01879 0.02012 0.02648 0.75% Castro::construct_new_gravity_source() 10 0.02135 0.02319 0.02517 0.71% Castro::initialize_do_advance() 10 0.01123 0.0168 0.02202 0.63% MultiFab::contains_nan() 20 0.009262 0.01096 0.01383 0.39% FabArray::Saxpy() 20 0.01039 0.012 0.01331 0.38% Castro::initialize_advance() 10 0.005362 0.01026 0.0131 0.37% VisMF::Write(FabArray) 2 0.009088 0.009873 0.01291 0.37% Amr::writePlotFile() 2 0.007354 0.009303 0.01002 0.28% Amr::coarseTimeStep() 10 0.001346 0.008471 0.009914 0.28% FabArray::setDomainBndry() 41 0.00722 0.008929 0.009907 0.28% Castro::construct_old_gravity_source() 10 0.006454 0.008685 0.009302 0.26% Castro::initMFs() 1 0.006649 0.007501 0.00791 0.22% Castro::construct_new_source() 50 0.005505 0.006038 0.006216 0.18% main() 1 0.003929 0.003986 0.004121 0.12% Gravity::get_new_grav_vector() 11 0.002517 0.003398 0.00385 0.11% Gravity::get_old_grav_vector() 10 0.001488 0.001903 0.002319 0.07% Castro::finalize_do_advance() 10 0.0004999 0.001039 0.001379 0.04% AmrLevel::FillPatch() 41 0.0006782 0.0009148 0.0009979 0.03% Amr::timeStep() 10 0.0001572 0.0002082 0.0003647 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002736 0.0002883 0.0003082 0.01% Castro::do_advance_ctu() 10 0.0001357 0.0001655 0.000198 0.01% Castro::clean_state() 62 0.0001425 0.0001572 0.0001799 0.01% Castro::Castro() 1 9.136e-05 0.0001116 0.0001402 0.00% StateDataPhysBCFunct::() 41 9.919e-05 0.0001148 0.0001352 0.00% FillPatchIterator::FillFromLevel0() 41 9.327e-05 0.0001028 0.0001151 0.00% Castro::do_old_sources() 10 7.334e-05 8.818e-05 0.0001073 0.00% FabArray::ParallelCopy() 41 6.92e-05 7.81e-05 9.032e-05 0.00% FillPatchSingleLevel 41 6.865e-05 7.613e-05 8.431e-05 0.00% Castro::subcycle_advance_ctu() 10 3.729e-05 4.995e-05 8.36e-05 0.00% Castro::construct_old_source() 50 5.231e-05 6.953e-05 7.732e-05 0.00% Amr::FinalizeInit() 1 3.829e-06 1.371e-05 7.466e-05 0.00% Castro::do_new_sources() 10 5.453e-05 6.061e-05 7.146e-05 0.00% Amr::defBaseLevel() 1 4.052e-05 5.234e-05 6.07e-05 0.00% Castro::apply_source_to_state() 20 3.648e-05 4.369e-05 5.566e-05 0.00% Castro::advance() 10 3.433e-05 4.647e-05 5.283e-05 0.00% Castro::construct_old_gravity() 10 3.031e-05 3.746e-05 4.712e-05 0.00% Castro::construct_new_gravity() 10 2.886e-05 3.27e-05 4.093e-05 0.00% Castro::post_timestep() 10 1.581e-05 2.051e-05 3.99e-05 0.00% Castro::check_for_nan() 20 2.248e-05 2.566e-05 2.888e-05 0.00% Castro::expand_state() 10 2e-05 2.327e-05 2.69e-05 0.00% Castro::computeNewDt() 9 8.091e-06 1.185e-05 2.117e-05 0.00% Castro::post_init() 1 2.268e-06 5.782e-06 1.515e-05 0.00% Amr::init() 1 1.869e-06 3.151e-06 9.737e-06 0.00% Amr::InitializeInit() 1 3.196e-06 6.054e-06 9.355e-06 0.00% Amr::initialInit() 1 1.561e-06 2.775e-06 9.083e-06 0.00% Castro::computeInitialDt() 2 3.293e-06 3.932e-06 5.172e-06 0.00% Other 261 0.0158 0.01889 0.02057 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.522 3.522 3.522 100.00% Amr::coarseTimeStep() 10 3.313 3.313 3.313 94.04% Amr::timeStep() 10 3.288 3.289 3.296 93.58% Castro::advance() 10 3.272 3.273 3.273 92.92% Castro::subcycle_advance_ctu() 10 3.186 3.2 3.22 91.42% Castro::do_advance_ctu() 10 3.186 3.2 3.22 91.42% Castro::construct_ctu_hydro_source() 10 2.453 2.456 2.46 69.83% Gravity::make_radial_gravity() 21 0.3054 0.3142 0.3238 9.19% AmrLevel::FillPatch() 41 0.19 0.2135 0.2379 6.75% FillPatchIterator::Initialize 41 0.1596 0.1816 0.2127 6.04% Gravity::get_new_grav_vector() 11 0.2046 0.2055 0.2065 5.86% Castro::construct_old_gravity() 10 0.1848 0.192 0.1983 5.63% Amr::init() 1 0.1974 0.1976 0.1976 5.61% Gravity::get_old_grav_vector() 10 0.1837 0.1911 0.1973 5.60% Castro::initialize_do_advance() 10 0.167 0.1808 0.1945 5.52% check_for_negative_density() 10 0.04486 0.09674 0.1932 5.49% Castro::construct_new_gravity() 10 0.1819 0.183 0.1838 5.22% Amr::initialInit() 1 0.1828 0.1833 0.1835 5.21% FillPatchIterator::FillFromLevel0() 41 0.1138 0.1406 0.1788 5.08% FillPatchSingleLevel 41 0.1137 0.1405 0.1787 5.07% Amr::InitializeInit() 1 0.08003 0.1141 0.1573 4.47% Amr::defBaseLevel() 1 0.08003 0.1141 0.1573 4.47% FabArray::ParallelCopy() 41 0.07887 0.1075 0.1483 4.21% Castro::expand_state() 10 0.1102 0.1275 0.147 4.17% Castro::initData() 1 0.06087 0.0957 0.1385 3.93% Castro::clean_state() 62 0.1099 0.114 0.1237 3.51% Castro::estTimeStep() 21 0.02732 0.07626 0.1152 3.27% FabArray::ParallelCopy_finish() 41 0.03585 0.06753 0.1146 3.25% Amr::FinalizeInit() 1 0.02611 0.06927 0.1034 2.94% Castro::do_old_sources() 10 0.09016 0.09351 0.09567 2.72% FabArray::setVal() 143 0.05317 0.06894 0.08627 2.45% amrex::Copy() 193 0.06171 0.07731 0.0853 2.42% Castro::initialize_advance() 10 0.0485 0.06961 0.08322 2.36% Castro::computeInitialDt() 2 0.002173 0.0454 0.07946 2.26% Castro::computeTemp() 63 0.06393 0.06683 0.07459 2.12% Castro::do_new_sources() 10 0.05516 0.06114 0.06621 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04503 0.04671 0.04811 1.37% Castro::reset_internal_energy(Fab) 1008 0.04476 0.04642 0.04783 1.36% Castro::normalize_species() 62 0.04104 0.04202 0.04342 1.23% FabArray::ParallelCopy_nowait() 41 0.0337 0.03985 0.04295 1.22% StateDataPhysBCFunct::() 41 0.03035 0.03294 0.03474 0.99% StateData::FillBoundary(geom) 41 0.03022 0.03282 0.03463 0.98% Castro::construct_new_source() 50 0.02686 0.02923 0.03129 0.89% Gravity::interpolate_monopole_grav() 21 0.02709 0.02876 0.02941 0.84% Castro::construct_new_gravity_source() 10 0.02135 0.02319 0.02517 0.71% Castro::finalize_do_advance() 10 0.01271 0.01806 0.02442 0.69% Castro::post_init() 1 0.02299 0.02343 0.0236 0.67% Castro::post_timestep() 10 0.01508 0.01639 0.02313 0.66% Amr::writePlotFile() 2 0.02167 0.02179 0.02217 0.63% Castro::computeNewDt() 9 0.01384 0.01386 0.0139 0.39% Castro::check_for_nan() 20 0.009287 0.01099 0.01385 0.39% MultiFab::contains_nan() 20 0.009262 0.01096 0.01383 0.39% Castro::apply_source_to_state() 20 0.01043 0.01204 0.01336 0.38% FabArray::Saxpy() 20 0.01039 0.012 0.01331 0.38% VisMF::Write(FabArray) 2 0.009088 0.009873 0.01291 0.37% Castro::Castro() 1 0.009664 0.01182 0.01245 0.35% FabArray::setDomainBndry() 41 0.00722 0.008929 0.009907 0.28% Castro::construct_old_source() 50 0.006507 0.008755 0.009371 0.27% Castro::construct_old_gravity_source() 10 0.006454 0.008685 0.009302 0.26% Castro::initMFs() 1 0.006649 0.007501 0.00791 0.22% Other 261 0.02638 0.03014 0.03246 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 40 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-15-gcca5aade6929) finalized