Initializing AMReX (24.07-16-gdcb9cc0383dc)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-16-gdcb9cc0383dc) initialized Starting run at 05:37:38 UTC on 2024-07-11. Successfully read inputs file ... Castro git describe: 24.07-12-g8b289c118 AMReX git describe: 24.07-16-gdcb9cc038 Microphysics git describe: 24.07-10-g0b1a2310 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015099204 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.348827893 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339462174 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.369360868 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.354839118 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.347904888 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.309178641 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310552516 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309494874 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311994177 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310012158 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00757319 seconds Ending run at 05:37:41 UTC on 2024-07-11. Run time = 3.525673619 Run time without initialization = 3.324352152 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.525 ... 3.526 ... 3.526 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1912 2.3275 2.3715 67.26% Gravity::make_radial_gravity() 21 0.2942 0.3006 0.3124 8.86% check_for_negative_density() 10 0.04736 0.09371 0.2333 6.62% Castro::initData() 1 0.05042 0.09026 0.1362 3.86% Castro::estTimeStep() 21 0.03251 0.08516 0.1319 3.74% amrex::Copy() 193 0.0653 0.0808 0.08868 2.52% FabArray::ParallelCopy_finish() 41 0.03835 0.05982 0.08055 2.28% FabArray::setVal() 143 0.06506 0.07128 0.08054 2.28% Castro::normalize_species() 62 0.04204 0.044 0.04832 1.37% Castro::reset_internal_energy(Fab) 1008 0.04391 0.04663 0.04822 1.37% FabArray::ParallelCopy_nowait() 41 0.03485 0.04119 0.04771 1.35% FillPatchIterator::Initialize 41 0.0265 0.03412 0.03825 1.09% Castro::construct_new_gravity_source() 10 0.02192 0.02576 0.03593 1.02% StateData::FillBoundary(geom) 41 0.02884 0.03296 0.03498 0.99% Gravity::interpolate_monopole_grav() 21 0.02709 0.02922 0.03036 0.86% Castro::initialize_do_advance() 10 0.01297 0.01833 0.02214 0.63% Castro::computeTemp() 63 0.01687 0.01918 0.0202 0.57% Castro::initialize_advance() 10 0.009724 0.0114 0.01334 0.38% FabArray::Saxpy() 20 0.01091 0.01181 0.01252 0.36% VisMF::Write(FabArray) 2 0.009429 0.01002 0.01231 0.35% MultiFab::contains_nan() 20 0.01027 0.0107 0.01142 0.32% Amr::writePlotFile() 2 0.007731 0.01002 0.01071 0.30% FabArray::setDomainBndry() 41 0.007976 0.009633 0.01039 0.29% Castro::construct_old_gravity_source() 10 0.006671 0.008654 0.009324 0.26% Castro::construct_new_source() 50 0.005161 0.006222 0.009205 0.26% Castro::initMFs() 1 0.006521 0.00703 0.007804 0.22% Amr::coarseTimeStep() 10 0.002457 0.006193 0.00743 0.21% main() 1 0.003893 0.004032 0.004213 0.12% Gravity::get_new_grav_vector() 11 0.002903 0.003647 0.004003 0.11% Gravity::get_old_grav_vector() 10 0.001592 0.002034 0.00239 0.07% Castro::finalize_do_advance() 10 0.000451 0.001005 0.001111 0.03% AmrLevel::FillPatch() 41 0.0007218 0.0009682 0.001046 0.03% Amr::timeStep() 10 0.0001726 0.0002222 0.0004924 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002824 0.0003019 0.000319 0.01% Castro::do_advance_ctu() 10 0.0001278 0.0001517 0.0002068 0.01% Castro::clean_state() 62 0.0001369 0.000154 0.0001955 0.01% StateDataPhysBCFunct::() 41 9.448e-05 0.0001075 0.0001284 0.00% FillPatchIterator::FillFromLevel0() 41 9.994e-05 0.0001106 0.0001263 0.00% Castro::Castro() 1 8.281e-05 9.485e-05 0.0001098 0.00% Castro::do_old_sources() 10 7.279e-05 8.861e-05 0.000106 0.00% FabArray::ParallelCopy() 41 7.372e-05 8.203e-05 9.874e-05 0.00% Amr::FinalizeInit() 1 3.871e-06 1.637e-05 9.811e-05 0.00% Castro::do_new_sources() 10 5.376e-05 6.477e-05 9.306e-05 0.00% FillPatchSingleLevel 41 6.636e-05 7.19e-05 8.193e-05 0.00% Castro::construct_old_source() 50 5.669e-05 7.133e-05 7.969e-05 0.00% Castro::apply_source_to_state() 20 4.064e-05 4.931e-05 5.897e-05 0.00% Castro::construct_old_gravity() 10 4.221e-05 4.956e-05 5.865e-05 0.00% Amr::defBaseLevel() 1 3.702e-05 4.611e-05 5.695e-05 0.00% Castro::subcycle_advance_ctu() 10 4.044e-05 4.809e-05 5.455e-05 0.00% Castro::advance() 10 3.738e-05 4.081e-05 4.583e-05 0.00% Castro::construct_new_gravity() 10 3.05e-05 3.398e-05 4.344e-05 0.00% Castro::expand_state() 10 2.251e-05 2.608e-05 2.969e-05 0.00% Castro::check_for_nan() 20 2.085e-05 2.356e-05 2.73e-05 0.00% Castro::post_timestep() 10 1.562e-05 1.924e-05 2.663e-05 0.00% Castro::computeNewDt() 9 7.975e-06 1.045e-05 1.615e-05 0.00% Castro::post_init() 1 2.526e-06 6.237e-06 1.303e-05 0.00% Amr::initialInit() 1 1.786e-06 3.415e-06 1.182e-05 0.00% Amr::InitializeInit() 1 2.868e-06 3.794e-06 5.687e-06 0.00% Castro::computeInitialDt() 2 3.494e-06 4.076e-06 5.353e-06 0.00% Amr::init() 1 2.038e-06 2.524e-06 3.403e-06 0.00% Other 261 0.01731 0.01983 0.02134 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.525 3.526 3.526 100.00% Amr::coarseTimeStep() 10 3.313 3.313 3.313 93.96% Amr::timeStep() 10 3.294 3.296 3.299 93.58% Castro::advance() 10 3.278 3.279 3.28 93.04% Castro::subcycle_advance_ctu() 10 3.196 3.201 3.206 90.94% Castro::do_advance_ctu() 10 3.196 3.201 3.206 90.94% Castro::construct_ctu_hydro_source() 10 2.439 2.443 2.45 69.50% Gravity::make_radial_gravity() 21 0.312 0.318 0.327 9.27% check_for_negative_density() 10 0.04736 0.09371 0.2333 6.62% AmrLevel::FillPatch() 41 0.1931 0.2108 0.2278 6.46% Gravity::get_new_grav_vector() 11 0.2081 0.2166 0.2209 6.27% Castro::construct_old_gravity() 10 0.1844 0.1902 0.201 5.70% Amr::init() 1 0.2006 0.2007 0.2008 5.69% Gravity::get_old_grav_vector() 10 0.1835 0.1893 0.2003 5.68% Castro::construct_new_gravity() 10 0.1853 0.193 0.1969 5.59% FillPatchIterator::Initialize 41 0.1593 0.1782 0.1922 5.45% Amr::initialInit() 1 0.1853 0.1854 0.1855 5.26% Castro::initialize_do_advance() 10 0.1571 0.1726 0.1831 5.19% Amr::InitializeInit() 1 0.07074 0.1112 0.158 4.48% Amr::defBaseLevel() 1 0.07073 0.1111 0.158 4.48% FillPatchIterator::FillFromLevel0() 41 0.1115 0.1344 0.1468 4.16% FillPatchSingleLevel 41 0.1114 0.1343 0.1466 4.16% Castro::initData() 1 0.05455 0.0943 0.1398 3.97% Castro::estTimeStep() 21 0.03251 0.08516 0.1319 3.74% Castro::expand_state() 10 0.1083 0.1183 0.1294 3.67% Castro::clean_state() 62 0.1103 0.1167 0.123 3.49% FabArray::ParallelCopy() 41 0.07902 0.1012 0.1156 3.28% Amr::FinalizeInit() 1 0.0274 0.07427 0.1146 3.25% Castro::do_old_sources() 10 0.08904 0.0937 0.0962 2.73% Castro::computeInitialDt() 2 0.002311 0.04912 0.0894 2.54% amrex::Copy() 193 0.0653 0.0808 0.08868 2.52% FabArray::ParallelCopy_finish() 41 0.03835 0.05982 0.08055 2.28% FabArray::setVal() 143 0.06506 0.07128 0.08054 2.28% Castro::initialize_advance() 10 0.06891 0.07372 0.07923 2.25% Castro::do_new_sources() 10 0.05848 0.06641 0.0776 2.20% Castro::computeTemp() 63 0.0612 0.06611 0.06837 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04423 0.04693 0.0485 1.38% Castro::normalize_species() 62 0.04204 0.044 0.04832 1.37% Castro::reset_internal_energy(Fab) 1008 0.04391 0.04663 0.04822 1.37% FabArray::ParallelCopy_nowait() 41 0.03497 0.04129 0.0478 1.36% Castro::construct_new_source() 50 0.02772 0.03198 0.04198 1.19% Castro::finalize_do_advance() 10 0.01374 0.02739 0.03754 1.06% Castro::construct_new_gravity_source() 10 0.02192 0.02576 0.03593 1.02% StateDataPhysBCFunct::() 41 0.02895 0.03307 0.03511 1.00% StateData::FillBoundary(geom) 41 0.02884 0.03296 0.03498 0.99% Gravity::interpolate_monopole_grav() 21 0.02709 0.02922 0.03036 0.86% Castro::post_init() 1 0.02451 0.0246 0.02466 0.70% Amr::writePlotFile() 2 0.02293 0.02299 0.0231 0.66% Castro::post_timestep() 10 0.01506 0.01637 0.01885 0.53% Castro::apply_source_to_state() 20 0.01096 0.01186 0.01258 0.36% FabArray::Saxpy() 20 0.01091 0.01181 0.01252 0.36% VisMF::Write(FabArray) 2 0.009429 0.01002 0.01231 0.35% Castro::Castro() 1 0.01039 0.01096 0.01178 0.33% Castro::check_for_nan() 20 0.01029 0.01072 0.01144 0.32% MultiFab::contains_nan() 20 0.01027 0.0107 0.01142 0.32% FabArray::setDomainBndry() 41 0.007976 0.009633 0.01039 0.29% Castro::computeNewDt() 9 0.009651 0.009668 0.009679 0.27% Castro::construct_old_source() 50 0.006744 0.008726 0.009404 0.27% Castro::construct_old_gravity_source() 10 0.006671 0.008654 0.009324 0.26% Castro::initMFs() 1 0.006521 0.00703 0.007804 0.22% Other 261 0.02752 0.03131 0.03454 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 41 B 53 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-16-gdcb9cc0383dc) finalized