Initializing AMReX (24.07-16-gdcb9cc0383dc)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-16-gdcb9cc0383dc) initialized Starting run at 13:12:50 UTC on 2024-07-12. Successfully read inputs file ... Castro git describe: 24.07-12-g8b289c118 AMReX git describe: 24.07-16-gdcb9cc038 Microphysics git describe: 24.07-24-g0de4ffcf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015104518 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355161025 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345211539 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330511238 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.3310515 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.367913268 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315238903 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.307217415 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.30879218 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308559969 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310275395 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007612785 seconds Ending run at 13:12:54 UTC on 2024-07-12. Run time = 3.476842459 Run time without initialization = 3.292646102 Average number of zones advanced per microsecond: 0.796 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.476 ... 3.477 ... 3.477 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2600 2.3222 2.3858 68.62% Gravity::make_radial_gravity() 21 0.2816 0.2881 0.2969 8.54% check_for_negative_density() 10 0.02089 0.08734 0.1524 4.38% Castro::initData() 1 0.04847 0.0852 0.12 3.45% Castro::estTimeStep() 21 0.02234 0.06047 0.09914 2.85% amrex::Copy() 193 0.07999 0.08652 0.09756 2.81% FabArray::setVal() 143 0.06662 0.07189 0.0776 2.23% FabArray::ParallelCopy_finish() 41 0.04843 0.06251 0.07269 2.09% Castro::normalize_species() 62 0.04063 0.04205 0.04834 1.39% Castro::reset_internal_energy(Fab) 1008 0.04411 0.04645 0.04815 1.38% FabArray::ParallelCopy_nowait() 41 0.03912 0.04198 0.04691 1.35% FillPatchIterator::Initialize 41 0.02834 0.03437 0.03765 1.08% StateData::FillBoundary(geom) 41 0.02892 0.03283 0.03517 1.01% Gravity::interpolate_monopole_grav() 21 0.02704 0.02873 0.02967 0.85% Castro::construct_new_gravity_source() 10 0.02308 0.02407 0.02476 0.71% Castro::computeTemp() 63 0.01843 0.01937 0.02024 0.58% Castro::initialize_do_advance() 10 0.01211 0.01678 0.0178 0.51% Castro::initialize_advance() 10 0.01041 0.01246 0.01468 0.42% MultiFab::contains_nan() 20 0.01047 0.0114 0.01367 0.39% FabArray::Saxpy() 20 0.01181 0.01268 0.01337 0.38% FabArray::setDomainBndry() 41 0.007531 0.01085 0.0128 0.37% VisMF::Write(FabArray) 2 0.00947 0.009992 0.01236 0.36% Amr::writePlotFile() 2 0.007685 0.009838 0.01027 0.30% Castro::construct_old_gravity_source() 10 0.007726 0.009285 0.009755 0.28% Castro::initMFs() 1 0.006603 0.007096 0.008401 0.24% Castro::construct_new_source() 50 0.006163 0.006453 0.00674 0.19% Gravity::get_new_grav_vector() 11 0.002953 0.003552 0.004261 0.12% main() 1 0.003537 0.003924 0.004148 0.12% Amr::coarseTimeStep() 10 0.001282 0.001969 0.002701 0.08% Gravity::get_old_grav_vector() 10 0.001609 0.002106 0.002526 0.07% Castro::finalize_do_advance() 10 0.000378 0.001014 0.001483 0.04% AmrLevel::FillPatch() 41 0.0006702 0.0009947 0.00116 0.03% Amr::timeStep() 10 0.0001672 0.0002203 0.0003876 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002802 0.0002962 0.0003158 0.01% Castro::do_advance_ctu() 10 0.0001297 0.0001597 0.0002013 0.01% Castro::clean_state() 62 0.0001466 0.0001604 0.0001697 0.00% StateDataPhysBCFunct::() 41 9.591e-05 0.0001274 0.0001651 0.00% Castro::Castro() 1 7.959e-05 0.0001106 0.0001372 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001038 0.0001121 0.0001222 0.00% Castro::do_old_sources() 10 7.914e-05 9.059e-05 0.0001106 0.00% Amr::FinalizeInit() 1 4.124e-06 1.723e-05 0.0001061 0.00% FabArray::ParallelCopy() 41 7.887e-05 8.602e-05 9.554e-05 0.00% FillPatchSingleLevel 41 6.663e-05 7.911e-05 8.654e-05 0.00% Castro::construct_old_source() 50 5.578e-05 7.108e-05 8.002e-05 0.00% Castro::do_new_sources() 10 5.819e-05 6.351e-05 7.241e-05 0.00% Castro::subcycle_advance_ctu() 10 4.584e-05 5.194e-05 5.925e-05 0.00% Castro::apply_source_to_state() 20 4.395e-05 4.979e-05 5.552e-05 0.00% Castro::construct_new_gravity() 10 3.161e-05 4.021e-05 5.467e-05 0.00% Castro::advance() 10 3.656e-05 4.423e-05 5.292e-05 0.00% Castro::construct_old_gravity() 10 3.573e-05 4.202e-05 4.939e-05 0.00% Amr::defBaseLevel() 1 3.723e-05 3.968e-05 4.364e-05 0.00% Castro::expand_state() 10 2.101e-05 2.495e-05 3.154e-05 0.00% Castro::check_for_nan() 20 2.271e-05 2.4e-05 2.557e-05 0.00% Castro::post_timestep() 10 1.379e-05 1.616e-05 1.938e-05 0.00% Castro::computeNewDt() 9 7.541e-06 9.649e-06 1.122e-05 0.00% Amr::initialInit() 1 1.602e-06 3.171e-06 1.053e-05 0.00% Amr::init() 1 2.053e-06 3.483e-06 9.373e-06 0.00% Amr::InitializeInit() 1 2.848e-06 3.85e-06 6.701e-06 0.00% Castro::post_init() 1 2.345e-06 3.361e-06 4.515e-06 0.00% Castro::computeInitialDt() 2 2.988e-06 3.602e-06 4.133e-06 0.00% Other 261 0.01811 0.02018 0.02141 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.476 3.477 3.477 100.00% Amr::coarseTimeStep() 10 3.281 3.281 3.281 94.36% Amr::timeStep() 10 3.268 3.269 3.269 94.03% Castro::advance() 10 3.252 3.253 3.253 93.57% Castro::subcycle_advance_ctu() 10 3.174 3.176 3.179 91.44% Castro::do_advance_ctu() 10 3.174 3.176 3.179 91.44% Castro::construct_ctu_hydro_source() 10 2.428 2.43 2.433 69.99% Gravity::make_radial_gravity() 21 0.2989 0.3051 0.3122 8.98% AmrLevel::FillPatch() 41 0.1995 0.2175 0.2293 6.59% Gravity::get_new_grav_vector() 11 0.204 0.2055 0.207 5.95% Castro::construct_old_gravity() 10 0.1885 0.1948 0.2041 5.87% Gravity::get_old_grav_vector() 10 0.1878 0.1941 0.2033 5.85% FillPatchIterator::Initialize 41 0.1737 0.183 0.1944 5.59% Amr::init() 1 0.1834 0.1836 0.1837 5.28% Castro::construct_new_gravity() 10 0.1821 0.1827 0.1836 5.28% Amr::initialInit() 1 0.1681 0.1685 0.1687 4.85% Castro::initialize_do_advance() 10 0.1569 0.1643 0.1681 4.83% check_for_negative_density() 10 0.02089 0.08734 0.1524 4.38% FillPatchIterator::FillFromLevel0() 41 0.1241 0.1378 0.1469 4.22% FillPatchSingleLevel 41 0.124 0.1377 0.1468 4.22% Amr::InitializeInit() 1 0.07059 0.1065 0.1418 4.08% Amr::defBaseLevel() 1 0.07058 0.1065 0.1418 4.08% Castro::initData() 1 0.05174 0.089 0.1234 3.55% Castro::clean_state() 62 0.1108 0.1148 0.1209 3.48% Castro::do_old_sources() 10 0.09818 0.1053 0.1152 3.31% Castro::expand_state() 10 0.1018 0.11 0.1144 3.29% FabArray::ParallelCopy() 41 0.09102 0.1047 0.114 3.28% Castro::estTimeStep() 21 0.02234 0.06047 0.09914 2.85% Amr::FinalizeInit() 1 0.0268 0.06205 0.09804 2.82% amrex::Copy() 193 0.07999 0.08652 0.09756 2.81% FabArray::setVal() 143 0.06662 0.07189 0.0776 2.23% Castro::initialize_advance() 10 0.07032 0.07322 0.07608 2.19% Castro::computeInitialDt() 2 0.002246 0.0375 0.07343 2.11% FabArray::ParallelCopy_finish() 41 0.04843 0.06251 0.07269 2.09% Castro::computeTemp() 63 0.06293 0.06612 0.06856 1.97% Castro::do_new_sources() 10 0.06124 0.06425 0.06736 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04439 0.04675 0.04845 1.39% Castro::normalize_species() 62 0.04063 0.04205 0.04834 1.39% Castro::reset_internal_energy(Fab) 1008 0.04411 0.04645 0.04815 1.38% FabArray::ParallelCopy_nowait() 41 0.03923 0.04207 0.047 1.35% StateDataPhysBCFunct::() 41 0.02903 0.03296 0.03531 1.02% StateData::FillBoundary(geom) 41 0.02892 0.03283 0.03517 1.01% Castro::construct_new_source() 50 0.02935 0.03052 0.0315 0.91% Gravity::interpolate_monopole_grav() 21 0.02704 0.02873 0.02967 0.85% Castro::construct_new_gravity_source() 10 0.02308 0.02407 0.02476 0.71% Castro::post_init() 1 0.02368 0.02411 0.02422 0.70% Amr::writePlotFile() 2 0.02269 0.02277 0.02305 0.66% Castro::finalize_do_advance() 10 0.01146 0.01494 0.01779 0.51% Castro::post_timestep() 10 0.01508 0.01571 0.01622 0.47% Castro::check_for_nan() 20 0.0105 0.01143 0.01369 0.39% MultiFab::contains_nan() 20 0.01047 0.0114 0.01367 0.39% Castro::apply_source_to_state() 20 0.01186 0.01273 0.01342 0.39% FabArray::Saxpy() 20 0.01181 0.01268 0.01337 0.38% FabArray::setDomainBndry() 41 0.007531 0.01085 0.0128 0.37% Castro::Castro() 1 0.0104 0.01119 0.01246 0.36% VisMF::Write(FabArray) 2 0.00947 0.009992 0.01236 0.36% Castro::construct_old_source() 50 0.007782 0.009356 0.009833 0.28% Castro::construct_old_gravity_source() 10 0.007726 0.009285 0.009755 0.28% Castro::computeNewDt() 9 0.009039 0.009054 0.009069 0.26% Castro::initMFs() 1 0.006603 0.007096 0.008401 0.24% Other 261 0.02857 0.03125 0.03305 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 40 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-16-gdcb9cc0383dc) finalized