Initializing AMReX (24.07-16-gdcb9cc0383dc)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-16-gdcb9cc0383dc) initialized Starting run at 05:20:30 UTC on 2024-07-12. Successfully read inputs file ... Castro git describe: 24.07-12-g8b289c118 AMReX git describe: 24.07-16-gdcb9cc038 Microphysics git describe: 24.07-13-g963ff003 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014281921 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.340851269 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335632246 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.347497093 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.360856398 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.381509541 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.317201502 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31659793 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317097547 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313240363 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315799365 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008161029 seconds Ending run at 05:20:34 UTC on 2024-07-12. Run time = 3.603663218 Run time without initialization = 3.359314559 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.603 ... 3.604 ... 3.604 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2964 2.3428 2.4302 67.44% Gravity::make_radial_gravity() 21 0.2961 0.3151 0.326 9.05% check_for_negative_density() 10 0.01569 0.1069 0.154 4.27% Castro::initData() 1 0.04871 0.08589 0.1201 3.33% FabArray::ParallelCopy_finish() 41 0.04795 0.0671 0.1089 3.02% Castro::estTimeStep() 21 0.036 0.0707 0.1089 3.02% amrex::Copy() 193 0.05954 0.07725 0.09267 2.57% FabArray::setVal() 143 0.05304 0.06797 0.07917 2.20% Amr::InitAmr() 1 0.0003618 0.008371 0.06418 1.78% DistributionMapping::LeastUsedCPUs() 1 3.23e-05 0.05585 0.06385 1.77% Castro::reset_internal_energy(Fab) 1008 0.04465 0.04673 0.04956 1.38% Castro::normalize_species() 62 0.0418 0.04251 0.04333 1.20% FabArray::ParallelCopy_nowait() 41 0.03356 0.03927 0.04084 1.13% StateData::FillBoundary(geom) 41 0.02997 0.03294 0.0371 1.03% FillPatchIterator::Initialize 41 0.02773 0.03196 0.03387 0.94% Gravity::interpolate_monopole_grav() 21 0.02753 0.02938 0.03051 0.85% Castro::construct_new_gravity_source() 10 0.02115 0.02418 0.02846 0.79% Castro::initialize_do_advance() 10 0.01154 0.01622 0.02018 0.56% Castro::computeTemp() 63 0.01833 0.01944 0.02013 0.56% MultiFab::contains_nan() 20 0.01046 0.01191 0.0143 0.40% Castro::initialize_advance() 10 0.005462 0.009946 0.01309 0.36% VisMF::Write(FabArray) 2 0.009197 0.009872 0.01292 0.36% FabArray::Saxpy() 20 0.01025 0.01187 0.01281 0.36% Amr::writePlotFile() 2 0.007744 0.009771 0.01036 0.29% FabArray::setDomainBndry() 41 0.006695 0.009129 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.006415 0.008896 0.009591 0.27% Castro::initMFs() 1 0.006311 0.006704 0.008411 0.23% Amr::coarseTimeStep() 10 0.001322 0.006778 0.008229 0.23% Castro::construct_new_source() 50 0.005488 0.005927 0.006282 0.17% main() 1 0.003754 0.00403 0.004137 0.11% Gravity::get_new_grav_vector() 11 0.002535 0.003281 0.003598 0.10% Gravity::get_old_grav_vector() 10 0.001472 0.001926 0.002226 0.06% Castro::finalize_do_advance() 10 0.0005099 0.001042 0.001236 0.03% AmrLevel::FillPatch() 41 0.0007141 0.001082 0.001204 0.03% Amr::timeStep() 10 0.0001433 0.0002178 0.0003886 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002778 0.0002998 0.0003185 0.01% Castro::do_advance_ctu() 10 0.0001363 0.000152 0.0001802 0.01% Castro::clean_state() 62 0.0001251 0.0001525 0.0001772 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001012 0.00012 0.0001608 0.00% Castro::Castro() 1 7.368e-05 0.0001027 0.0001582 0.00% StateDataPhysBCFunct::() 41 9.324e-05 0.0001155 0.0001497 0.00% FabArray::ParallelCopy() 41 7.323e-05 8.456e-05 0.0001012 0.00% Castro::do_old_sources() 10 7.48e-05 8.586e-05 9.674e-05 0.00% Amr::FinalizeInit() 1 3.966e-06 1.546e-05 9.268e-05 0.00% Castro::construct_old_source() 50 5.724e-05 7.052e-05 8.911e-05 0.00% FillPatchSingleLevel 41 6.925e-05 7.681e-05 8.833e-05 0.00% Castro::do_new_sources() 10 4.999e-05 5.568e-05 6.228e-05 0.00% Castro::apply_source_to_state() 20 4.485e-05 4.794e-05 5.445e-05 0.00% Castro::advance() 10 3.765e-05 4.287e-05 5.21e-05 0.00% Castro::construct_old_gravity() 10 4.246e-05 4.644e-05 5.043e-05 0.00% Castro::subcycle_advance_ctu() 10 3.766e-05 4.394e-05 4.762e-05 0.00% Amr::defBaseLevel() 1 3.779e-05 4.012e-05 4.497e-05 0.00% Castro::construct_new_gravity() 10 2.881e-05 3.344e-05 4.033e-05 0.00% Castro::check_for_nan() 20 2.142e-05 2.498e-05 3.117e-05 0.00% Castro::expand_state() 10 2.054e-05 2.385e-05 2.724e-05 0.00% Castro::post_timestep() 10 1.575e-05 1.839e-05 2.242e-05 0.00% Castro::computeNewDt() 9 7.625e-06 1.034e-05 1.422e-05 0.00% Amr::InitializeInit() 1 2.878e-06 3.698e-06 7.275e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.102e-06 4.606e-06 6.109e-06 0.00% Castro::computeInitialDt() 2 2.916e-06 3.583e-06 4.254e-06 0.00% Castro::post_init() 1 1.904e-06 2.805e-06 3.175e-06 0.00% Amr::init() 1 1.627e-06 2.198e-06 2.711e-06 0.00% Amr::initialInit() 1 1.598e-06 1.963e-06 2.44e-06 0.00% Other 258 0.01604 0.01892 0.02074 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.603 3.604 3.604 100.00% Amr::coarseTimeStep() 10 3.347 3.347 3.347 92.88% Amr::timeStep() 10 3.329 3.33 3.335 92.56% Castro::advance() 10 3.312 3.314 3.316 92.01% Castro::subcycle_advance_ctu() 10 3.233 3.242 3.259 90.44% Castro::do_advance_ctu() 10 3.233 3.242 3.259 90.44% Castro::construct_ctu_hydro_source() 10 2.467 2.471 2.474 68.65% Gravity::make_radial_gravity() 21 0.3126 0.3308 0.3373 9.36% Amr::init() 1 0.18 0.2358 0.2438 6.77% AmrLevel::FillPatch() 41 0.1858 0.2126 0.2316 6.43% Amr::initialInit() 1 0.1655 0.2217 0.2298 6.38% Gravity::get_new_grav_vector() 11 0.2154 0.2169 0.2181 6.05% FillPatchIterator::Initialize 41 0.1569 0.1809 0.2075 5.76% Castro::construct_old_gravity() 10 0.1839 0.2001 0.2052 5.69% Gravity::get_old_grav_vector() 10 0.1829 0.1992 0.2045 5.67% Amr::InitializeInit() 1 0.07684 0.1623 0.2037 5.65% Amr::defBaseLevel() 1 0.07683 0.1623 0.2037 5.65% Castro::construct_new_gravity() 10 0.1932 0.1944 0.1954 5.42% Castro::initialize_do_advance() 10 0.1646 0.1763 0.1921 5.33% FillPatchIterator::FillFromLevel0() 41 0.118 0.1398 0.1731 4.80% FillPatchSingleLevel 41 0.1179 0.1397 0.1729 4.80% check_for_negative_density() 10 0.01569 0.1069 0.154 4.27% FabArray::ParallelCopy() 41 0.08734 0.1066 0.1427 3.96% Castro::expand_state() 10 0.1067 0.1228 0.1385 3.84% Castro::initData() 1 0.05262 0.08982 0.1242 3.45% Castro::clean_state() 62 0.1117 0.1157 0.1203 3.34% FabArray::ParallelCopy_finish() 41 0.04795 0.0671 0.1089 3.02% Castro::estTimeStep() 21 0.036 0.0707 0.1089 3.02% Castro::do_old_sources() 10 0.09006 0.09448 0.09692 2.69% Amr::FinalizeInit() 1 0.02603 0.05947 0.09676 2.69% amrex::Copy() 193 0.05954 0.07725 0.09267 2.57% FabArray::setVal() 143 0.05304 0.06797 0.07917 2.20% Castro::initialize_advance() 10 0.0502 0.06774 0.07658 2.13% Castro::do_new_sources() 10 0.05587 0.06357 0.0754 2.09% Castro::computeInitialDt() 2 0.002182 0.03561 0.07283 2.02% Castro::computeTemp() 63 0.06325 0.06648 0.06999 1.94% Amr::InitAmr() 1 0.000374 0.008383 0.06419 1.78% DistributionMapping::SFCProcessorMapDoIt() 1 3.763e-05 0.05585 0.06386 1.77% DistributionMapping::LeastUsedCPUs() 1 3.23e-05 0.05585 0.06385 1.77% Castro::reset_internal_energy(MultiFab) 63 0.04493 0.04703 0.04986 1.38% Castro::reset_internal_energy(Fab) 1008 0.04465 0.04673 0.04956 1.38% Castro::normalize_species() 62 0.0418 0.04251 0.04333 1.20% FabArray::ParallelCopy_nowait() 41 0.03367 0.03937 0.04092 1.14% StateDataPhysBCFunct::() 41 0.03012 0.03306 0.0372 1.03% StateData::FillBoundary(geom) 41 0.02997 0.03294 0.0371 1.03% Castro::finalize_do_advance() 10 0.01389 0.02699 0.035 0.97% Castro::construct_new_source() 50 0.02664 0.0301 0.03455 0.96% Gravity::interpolate_monopole_grav() 21 0.02753 0.02938 0.03051 0.85% Castro::construct_new_gravity_source() 10 0.02115 0.02418 0.02846 0.79% Castro::post_init() 1 0.02294 0.02338 0.02354 0.65% Amr::writePlotFile() 2 0.0222 0.02231 0.02273 0.63% Castro::post_timestep() 10 0.01512 0.01619 0.01945 0.54% Castro::check_for_nan() 20 0.01049 0.01194 0.01433 0.40% MultiFab::contains_nan() 20 0.01046 0.01191 0.0143 0.40% VisMF::Write(FabArray) 2 0.009197 0.009872 0.01292 0.36% Castro::apply_source_to_state() 20 0.0103 0.01191 0.01286 0.36% FabArray::Saxpy() 20 0.01025 0.01187 0.01281 0.36% Castro::Castro() 1 0.01 0.01099 0.0118 0.33% FabArray::setDomainBndry() 41 0.006695 0.009129 0.0103 0.29% Castro::construct_old_source() 50 0.00648 0.008967 0.009681 0.27% Castro::construct_old_gravity_source() 10 0.006415 0.008896 0.009591 0.27% Castro::computeNewDt() 9 0.009136 0.009155 0.009171 0.25% Castro::initMFs() 1 0.006311 0.006704 0.008411 0.23% Other 258 0.02581 0.02967 0.03408 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 39 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-16-gdcb9cc0383dc) finalized