Initializing AMReX (24.07-16-gdcb9cc0383dc)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-16-gdcb9cc0383dc) initialized Starting run at 05:21:56 UTC on 2024-07-15. Successfully read inputs file ... Castro git describe: 24.07-14-g2fe8c1f25 AMReX git describe: 24.07-16-gdcb9cc038 Microphysics git describe: 24.07-17-g24fc8547 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014418692 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351259898 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35735081 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327767018 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328110963 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.370220906 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.352140714 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312546279 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31244851 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311874646 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313442909 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007706201 seconds Ending run at 05:22:00 UTC on 2024-07-15. Run time = 3.545993962 Run time without initialization = 3.350174515 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.545 ... 3.546 ... 3.546 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3061 2.3427 2.3946 67.53% Gravity::make_radial_gravity() 21 0.2995 0.3079 0.32 9.02% check_for_negative_density() 10 0.06651 0.1175 0.1574 4.44% Castro::initData() 1 0.04875 0.08873 0.1324 3.73% Castro::estTimeStep() 21 0.03061 0.07411 0.1161 3.27% FabArray::ParallelCopy_finish() 41 0.04242 0.05983 0.09708 2.74% amrex::Copy() 193 0.06166 0.08017 0.09239 2.61% FabArray::setVal() 143 0.05442 0.06559 0.07101 2.00% Castro::normalize_species() 62 0.04166 0.0446 0.05192 1.46% Castro::reset_internal_energy(Fab) 1008 0.04649 0.04791 0.05046 1.42% FabArray::ParallelCopy_nowait() 41 0.03507 0.04025 0.04277 1.21% StateData::FillBoundary(geom) 41 0.03112 0.0328 0.03497 0.99% FillPatchIterator::Initialize 41 0.02596 0.03158 0.03448 0.97% Gravity::interpolate_monopole_grav() 21 0.02758 0.02974 0.0319 0.90% Castro::construct_new_gravity_source() 10 0.02264 0.02379 0.02559 0.72% Castro::computeTemp() 63 0.01873 0.02019 0.02169 0.61% Castro::initialize_do_advance() 10 0.01223 0.01583 0.01695 0.48% FabArray::Saxpy() 20 0.01029 0.01185 0.01307 0.37% Castro::initialize_advance() 10 0.0105 0.01176 0.01259 0.35% Amr::writePlotFile() 2 0.007851 0.01025 0.01195 0.34% MultiFab::contains_nan() 20 0.01004 0.01108 0.01183 0.33% VisMF::Write(FabArray) 2 0.00879 0.009422 0.01173 0.33% FabArray::setDomainBndry() 41 0.006485 0.008911 0.01016 0.29% Castro::construct_old_gravity_source() 10 0.006296 0.0087 0.009524 0.27% Castro::enforce_min_density() 62 0.007192 0.007496 0.007814 0.22% Castro::construct_new_source() 50 0.006078 0.006499 0.006983 0.20% Amr::coarseTimeStep() 10 0.00115 0.003928 0.004897 0.14% main() 1 0.003577 0.003962 0.004391 0.12% Gravity::get_new_grav_vector() 11 0.002685 0.003394 0.004075 0.11% Gravity::get_old_grav_vector() 10 0.001554 0.002006 0.002621 0.07% Castro::finalize_do_advance() 10 0.0004909 0.0009621 0.001066 0.03% AmrLevel::FillPatch() 41 0.000716 0.0008067 0.0008992 0.03% Amr::timeStep() 10 0.0001693 0.0002337 0.0004964 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002893 0.0003058 0.0003337 0.01% Castro::do_advance_ctu() 10 0.0001405 0.0001612 0.0001953 0.01% Castro::clean_state() 62 0.0001461 0.0001563 0.0001678 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001024 0.0001151 0.0001435 0.00% Castro::Castro() 1 8.401e-05 0.0001116 0.0001322 0.00% StateDataPhysBCFunct::() 41 9.368e-05 0.0001083 0.000128 0.00% Castro::do_old_sources() 10 7.409e-05 9.116e-05 0.0001119 0.00% FabArray::ParallelCopy() 41 6.821e-05 7.913e-05 0.0001028 0.00% Amr::FinalizeInit() 1 3.787e-06 1.558e-05 9.052e-05 0.00% FillPatchSingleLevel 41 6.336e-05 7.773e-05 8.55e-05 0.00% Castro::construct_old_source() 50 5.006e-05 6.774e-05 7.673e-05 0.00% Castro::subcycle_advance_ctu() 10 4.227e-05 4.974e-05 7.225e-05 0.00% Castro::do_new_sources() 10 5.077e-05 6.003e-05 6.747e-05 0.00% Castro::construct_new_gravity() 10 3.63e-05 4.634e-05 6.208e-05 0.00% Castro::apply_source_to_state() 20 3.87e-05 4.918e-05 6.113e-05 0.00% Amr::defBaseLevel() 1 3.799e-05 5.117e-05 5.887e-05 0.00% Castro::construct_old_gravity() 10 3.286e-05 4.141e-05 5.438e-05 0.00% Castro::advance() 10 3.915e-05 4.374e-05 5.26e-05 0.00% Castro::expand_state() 10 2.39e-05 2.658e-05 3.101e-05 0.00% Castro::check_for_nan() 20 2.216e-05 2.478e-05 2.799e-05 0.00% Castro::post_timestep() 10 1.306e-05 1.626e-05 2.059e-05 0.00% Castro::computeNewDt() 9 7.964e-06 9.564e-06 1.145e-05 0.00% Amr::initialInit() 1 1.556e-06 3.629e-06 9.003e-06 0.00% Amr::InitializeInit() 1 3.187e-06 3.785e-06 5.861e-06 0.00% Castro::computeInitialDt() 2 2.678e-06 3.375e-06 3.999e-06 0.00% Castro::post_init() 1 2.221e-06 2.971e-06 3.392e-06 0.00% Amr::init() 1 1.859e-06 2.327e-06 2.866e-06 0.00% Other 200 0.01679 0.01948 0.02095 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.545 3.546 3.546 100.00% Amr::coarseTimeStep() 10 3.338 3.338 3.338 94.14% Amr::timeStep() 10 3.322 3.323 3.326 93.79% Castro::advance() 10 3.306 3.306 3.307 93.25% Castro::subcycle_advance_ctu() 10 3.228 3.234 3.241 91.39% Castro::do_advance_ctu() 10 3.228 3.234 3.241 91.39% Castro::construct_ctu_hydro_source() 10 2.478 2.482 2.485 70.08% Gravity::make_radial_gravity() 21 0.3166 0.3238 0.3331 9.39% AmrLevel::FillPatch() 41 0.1928 0.205 0.2214 6.24% Castro::construct_old_gravity() 10 0.2002 0.2054 0.2119 5.98% Gravity::get_old_grav_vector() 10 0.1995 0.2047 0.2112 5.95% Gravity::get_new_grav_vector() 11 0.2033 0.2055 0.2074 5.85% FillPatchIterator::Initialize 41 0.1627 0.1739 0.1962 5.53% Amr::init() 1 0.1951 0.1952 0.1952 5.50% Castro::construct_new_gravity() 10 0.1814 0.1835 0.1847 5.21% Amr::initialInit() 1 0.1803 0.1806 0.1808 5.10% Castro::initialize_do_advance() 10 0.1616 0.1647 0.1672 4.72% FillPatchIterator::FillFromLevel0() 41 0.1189 0.1334 0.1638 4.62% FillPatchSingleLevel 41 0.1188 0.1333 0.1636 4.61% check_for_negative_density() 10 0.06651 0.1175 0.1574 4.44% Amr::InitializeInit() 1 0.06853 0.1103 0.1547 4.36% Amr::defBaseLevel() 1 0.06853 0.1103 0.1546 4.36% Castro::initData() 1 0.05269 0.09273 0.1363 3.84% FabArray::ParallelCopy() 41 0.08361 0.1003 0.1323 3.73% Castro::clean_state() 62 0.1156 0.1197 0.131 3.69% Castro::estTimeStep() 21 0.03061 0.07411 0.1161 3.27% Castro::expand_state() 10 0.1087 0.1119 0.1153 3.25% Amr::FinalizeInit() 1 0.02568 0.07032 0.1119 3.16% Castro::do_old_sources() 10 0.09155 0.09756 0.1037 2.92% FabArray::ParallelCopy_finish() 41 0.04242 0.05983 0.09708 2.74% amrex::Copy() 193 0.06166 0.08017 0.09239 2.61% Castro::computeInitialDt() 2 0.002204 0.04652 0.08818 2.49% Castro::initialize_advance() 10 0.06172 0.0693 0.07455 2.10% Castro::computeTemp() 63 0.06605 0.0684 0.07209 2.03% FabArray::setVal() 143 0.05442 0.06559 0.07101 2.00% Castro::do_new_sources() 10 0.06062 0.06333 0.0652 1.84% Castro::normalize_species() 62 0.04166 0.0446 0.05192 1.46% Castro::reset_internal_energy(MultiFab) 63 0.04679 0.04821 0.05077 1.43% Castro::reset_internal_energy(Fab) 1008 0.04649 0.04791 0.05046 1.42% FabArray::ParallelCopy_nowait() 41 0.03518 0.04035 0.04286 1.21% StateDataPhysBCFunct::() 41 0.03122 0.03291 0.03509 0.99% StateData::FillBoundary(geom) 41 0.03112 0.0328 0.03497 0.99% Gravity::interpolate_monopole_grav() 21 0.02758 0.02974 0.0319 0.90% Castro::construct_new_source() 50 0.02906 0.03029 0.03167 0.89% Castro::construct_new_gravity_source() 10 0.02264 0.02379 0.02559 0.72% Castro::post_init() 1 0.02279 0.02326 0.0235 0.66% Amr::writePlotFile() 2 0.02223 0.02236 0.02268 0.64% Castro::finalize_do_advance() 10 0.01631 0.01878 0.02167 0.61% Castro::post_timestep() 10 0.01562 0.01671 0.01909 0.54% Castro::apply_source_to_state() 20 0.01032 0.0119 0.01313 0.37% FabArray::Saxpy() 20 0.01029 0.01185 0.01307 0.37% Castro::Castro() 1 0.009055 0.01148 0.01195 0.34% Castro::check_for_nan() 20 0.01006 0.01111 0.01186 0.33% MultiFab::contains_nan() 20 0.01004 0.01108 0.01183 0.33% VisMF::Write(FabArray) 2 0.00879 0.009422 0.01173 0.33% FabArray::setDomainBndry() 41 0.006485 0.008911 0.01016 0.29% Castro::computeNewDt() 9 0.009771 0.009787 0.009802 0.28% Castro::construct_old_source() 50 0.006346 0.008768 0.009596 0.27% Castro::construct_old_gravity_source() 10 0.006296 0.0087 0.009524 0.27% Castro::enforce_min_density() 62 0.007192 0.007496 0.007814 0.22% Other 200 0.02679 0.03057 0.03295 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 41 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-16-gdcb9cc0383dc) finalized