Initializing AMReX (24.07-16-gdcb9cc0383dc)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-16-gdcb9cc0383dc) initialized Starting run at 05:20:19 UTC on 2024-07-16. Successfully read inputs file ... Castro git describe: 24.07-15-gb4b35ba86 AMReX git describe: 24.07-16-gdcb9cc038 Microphysics git describe: 24.07-18-g8fd0d4ae reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013956131 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.347688447 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34139256 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.32414907 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.322917616 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356992866 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.314215969 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308040211 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308589425 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308625244 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31132615 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.070311941 seconds Ending run at 05:20:23 UTC on 2024-07-16. Run time = 3.504065217 Run time without initialization = 3.319386159 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.503 ... 3.504 ... 3.504 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3088 2.3265 2.3467 66.97% Gravity::make_radial_gravity() 21 0.2879 0.298 0.3117 8.89% Castro::initData() 1 0.0475 0.0867 0.1222 3.49% Castro::estTimeStep() 21 0.02703 0.06422 0.109 3.11% check_for_negative_density() 10 0.05099 0.07322 0.0924 2.64% amrex::Copy() 193 0.06265 0.07735 0.08603 2.46% FabArray::ParallelCopy_finish() 41 0.03551 0.04521 0.08289 2.37% Amr::writePlotFile() 2 0.06996 0.07262 0.07442 2.12% FabArray::setVal() 143 0.05233 0.0648 0.06922 1.98% Castro::normalize_species() 62 0.04114 0.04482 0.04861 1.39% Castro::reset_internal_energy(Fab) 1008 0.04469 0.04607 0.04806 1.37% FabArray::ParallelCopy_nowait() 41 0.03565 0.04066 0.04187 1.19% FillPatchIterator::Initialize 41 0.02696 0.03141 0.03424 0.98% StateData::FillBoundary(geom) 41 0.02978 0.03211 0.03355 0.96% Gravity::interpolate_monopole_grav() 21 0.02735 0.02884 0.02977 0.85% Castro::construct_new_gravity_source() 10 0.02248 0.02391 0.02548 0.73% Castro::computeTemp() 63 0.01852 0.01938 0.0203 0.58% Castro::initialize_do_advance() 10 0.01182 0.016 0.01718 0.49% Castro::initialize_advance() 10 0.00524 0.0107 0.01317 0.38% FabArray::Saxpy() 20 0.0104 0.0124 0.01309 0.37% MultiFab::contains_nan() 20 0.01031 0.01129 0.01309 0.37% FabArray::setDomainBndry() 41 0.007139 0.009565 0.01219 0.35% VisMF::Write(FabArray) 2 0.008668 0.009368 0.01181 0.34% Castro::construct_old_gravity_source() 10 0.00693 0.009486 0.01013 0.29% Castro::enforce_min_density() 62 0.007136 0.007499 0.007894 0.23% Castro::construct_new_source() 50 0.005799 0.006348 0.00656 0.19% main() 1 0.003475 0.003901 0.004338 0.12% Amr::coarseTimeStep() 10 0.002195 0.003048 0.004117 0.12% Gravity::get_new_grav_vector() 11 0.0027 0.003312 0.003946 0.11% Gravity::get_old_grav_vector() 10 0.001694 0.002013 0.002371 0.07% Castro::finalize_do_advance() 10 0.000432 0.0009306 0.001069 0.03% AmrLevel::FillPatch() 41 0.0006964 0.0007513 0.0008167 0.02% Amr::timeStep() 10 0.0001599 0.000225 0.0004195 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002875 0.0002979 0.0003169 0.01% Castro::do_advance_ctu() 10 0.000139 0.0001593 0.0001937 0.01% Castro::clean_state() 62 0.0001355 0.0001604 0.000177 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001142 0.0001295 0.0001519 0.00% Castro::Castro() 1 7.507e-05 0.000106 0.0001285 0.00% StateDataPhysBCFunct::() 41 9.417e-05 0.0001052 0.0001188 0.00% Castro::do_old_sources() 10 7.858e-05 9.254e-05 0.0001083 0.00% Castro::construct_old_source() 50 5.923e-05 7.844e-05 9.108e-05 0.00% FillPatchSingleLevel 41 6.973e-05 7.819e-05 8.863e-05 0.00% FabArray::ParallelCopy() 41 7.206e-05 8.197e-05 8.779e-05 0.00% Amr::FinalizeInit() 1 3.678e-06 1.226e-05 6.581e-05 0.00% Castro::do_new_sources() 10 5.422e-05 5.887e-05 6.514e-05 0.00% Castro::apply_source_to_state() 20 4.857e-05 5.253e-05 5.594e-05 0.00% Castro::subcycle_advance_ctu() 10 4.237e-05 4.854e-05 5.517e-05 0.00% Castro::construct_new_gravity() 10 3.457e-05 4.603e-05 5.504e-05 0.00% Castro::construct_old_gravity() 10 3.455e-05 4.139e-05 5.394e-05 0.00% Castro::advance() 10 4.103e-05 4.364e-05 5.028e-05 0.00% Amr::defBaseLevel() 1 3.785e-05 4.004e-05 4.381e-05 0.00% Castro::expand_state() 10 2.324e-05 2.74e-05 3.101e-05 0.00% Castro::check_for_nan() 20 2.279e-05 2.67e-05 3.053e-05 0.00% Castro::post_timestep() 10 1.319e-05 1.608e-05 1.976e-05 0.00% Castro::computeNewDt() 9 8.011e-06 9.521e-06 1.108e-05 0.00% Amr::init() 1 1.663e-06 2.994e-06 8.598e-06 0.00% Amr::InitializeInit() 1 2.948e-06 3.617e-06 6.172e-06 0.00% Castro::post_init() 1 2.479e-06 2.991e-06 3.832e-06 0.00% Castro::computeInitialDt() 2 2.586e-06 3.29e-06 3.578e-06 0.00% Amr::initialInit() 1 1.264e-06 1.607e-06 1.952e-06 0.00% Other 200 0.01624 0.01934 0.02076 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.503 3.504 3.504 100.00% Amr::coarseTimeStep() 10 3.245 3.245 3.245 92.60% Amr::timeStep() 10 3.23 3.232 3.232 92.24% Castro::advance() 10 3.215 3.215 3.216 91.76% Castro::subcycle_advance_ctu() 10 3.14 3.144 3.16 90.18% Castro::do_advance_ctu() 10 3.14 3.144 3.16 90.18% Castro::construct_ctu_hydro_source() 10 2.418 2.421 2.424 69.18% Gravity::make_radial_gravity() 21 0.3013 0.3134 0.3244 9.26% AmrLevel::FillPatch() 41 0.1807 0.191 0.2094 5.98% Gravity::get_new_grav_vector() 11 0.2065 0.2078 0.2094 5.97% Castro::construct_old_gravity() 10 0.1742 0.1873 0.1964 5.61% Gravity::get_old_grav_vector() 10 0.1734 0.1866 0.1958 5.59% Castro::construct_new_gravity() 10 0.1847 0.1859 0.1875 5.35% FillPatchIterator::Initialize 41 0.152 0.1594 0.1849 5.28% Amr::init() 1 0.1839 0.1841 0.1841 5.25% Castro::initialize_do_advance() 10 0.1516 0.1593 0.1703 4.86% Amr::initialInit() 1 0.1696 0.1698 0.1699 4.85% FillPatchIterator::FillFromLevel0() 41 0.1092 0.1185 0.1508 4.30% FillPatchSingleLevel 41 0.1091 0.1183 0.1507 4.30% Amr::InitializeInit() 1 0.06526 0.1079 0.144 4.11% Amr::defBaseLevel() 1 0.06525 0.1079 0.144 4.11% Castro::initData() 1 0.05105 0.09058 0.1261 3.60% Castro::clean_state() 62 0.1118 0.1173 0.1235 3.52% FabArray::ParallelCopy() 41 0.07689 0.08605 0.1187 3.39% Castro::expand_state() 10 0.09937 0.1064 0.1185 3.38% Castro::estTimeStep() 21 0.02703 0.06422 0.109 3.11% Amr::FinalizeInit() 1 0.02558 0.06192 0.1045 2.98% Castro::do_old_sources() 10 0.09031 0.09297 0.09507 2.71% check_for_negative_density() 10 0.05099 0.07322 0.0924 2.64% amrex::Copy() 193 0.06265 0.07735 0.08603 2.46% Amr::writePlotFile() 2 0.08455 0.08469 0.08488 2.42% FabArray::ParallelCopy_finish() 41 0.03551 0.04521 0.08289 2.37% Castro::computeInitialDt() 2 0.002191 0.03832 0.08101 2.31% Castro::initialize_advance() 10 0.05138 0.06792 0.07234 2.06% FabArray::setVal() 143 0.05233 0.0648 0.06922 1.98% Castro::computeTemp() 63 0.06376 0.06575 0.06865 1.96% Castro::do_new_sources() 10 0.05942 0.06339 0.0674 1.92% Castro::normalize_species() 62 0.04114 0.04482 0.04861 1.39% Castro::reset_internal_energy(MultiFab) 63 0.04499 0.04637 0.04834 1.38% Castro::reset_internal_energy(Fab) 1008 0.04469 0.04607 0.04806 1.37% FabArray::ParallelCopy_nowait() 41 0.03576 0.04076 0.04196 1.20% StateDataPhysBCFunct::() 41 0.02989 0.03221 0.03364 0.96% StateData::FillBoundary(geom) 41 0.02978 0.03211 0.03355 0.96% Castro::construct_new_source() 50 0.02828 0.03026 0.03199 0.91% Gravity::interpolate_monopole_grav() 21 0.02735 0.02884 0.02977 0.85% Castro::construct_new_gravity_source() 10 0.02248 0.02391 0.02548 0.73% Castro::post_init() 1 0.02266 0.02308 0.02337 0.67% Castro::finalize_do_advance() 10 0.01291 0.01777 0.02157 0.62% Castro::post_timestep() 10 0.01513 0.01612 0.0171 0.49% Castro::apply_source_to_state() 20 0.01045 0.01245 0.01314 0.38% Castro::check_for_nan() 20 0.01034 0.01131 0.01311 0.37% FabArray::Saxpy() 20 0.0104 0.0124 0.01309 0.37% MultiFab::contains_nan() 20 0.01031 0.01129 0.01309 0.37% FabArray::setDomainBndry() 41 0.007139 0.009565 0.01219 0.35% Castro::Castro() 1 0.008824 0.01125 0.01201 0.34% VisMF::Write(FabArray) 2 0.008668 0.009368 0.01181 0.34% Castro::construct_old_source() 50 0.006989 0.009565 0.01022 0.29% Castro::construct_old_gravity_source() 10 0.00693 0.009486 0.01013 0.29% Castro::computeNewDt() 9 0.009062 0.009067 0.009071 0.26% Castro::enforce_min_density() 62 0.007136 0.007499 0.007894 0.23% Other 200 0.02562 0.03029 0.03254 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 39 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-16-gdcb9cc0383dc) finalized