Initializing AMReX (24.07-16-gdcb9cc0383dc)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-16-gdcb9cc0383dc) initialized Starting run at 05:20:52 UTC on 2024-07-17. Successfully read inputs file ... Castro git describe: 24.07-15-gb4b35ba86 AMReX git describe: 24.07-16-gdcb9cc038 Microphysics git describe: 24.07-18-g8fd0d4ae reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.42107632 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.339174271 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.320108817 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331860114 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.375721693 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.314736512 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.30992457 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313337691 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311156011 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313839805 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315842337 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00745862 seconds Ending run at 05:20:55 UTC on 2024-07-17. Run time = 3.854126031 Run time without initialization = 3.258163494 Average number of zones advanced per microsecond: 0.805 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.853 ... 3.854 ... 3.854 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2544 2.3105 2.3629 61.31% Amr::writePlotFile() 2 0.4141 0.4168 0.4175 10.83% Gravity::make_radial_gravity() 21 0.2895 0.2938 0.2977 7.72% check_for_negative_density() 10 0.03719 0.09026 0.1457 3.78% Castro::initData() 1 0.04755 0.0873 0.125 3.24% Castro::estTimeStep() 21 0.03821 0.07664 0.1095 2.84% amrex::Copy() 193 0.06766 0.07301 0.07777 2.02% FabArray::setVal() 143 0.05565 0.06357 0.07719 2.00% FabArray::ParallelCopy_finish() 41 0.03804 0.05999 0.07348 1.91% Castro::reset_internal_energy(Fab) 1008 0.04405 0.0469 0.04935 1.28% Castro::normalize_species() 62 0.04255 0.04301 0.0442 1.15% FabArray::ParallelCopy_nowait() 41 0.03635 0.03747 0.03842 1.00% StateData::FillBoundary(geom) 41 0.02996 0.0315 0.03271 0.85% FillPatchIterator::Initialize 41 0.02961 0.03116 0.03243 0.84% Gravity::interpolate_monopole_grav() 21 0.02786 0.02926 0.03053 0.79% Castro::construct_new_gravity_source() 10 0.02089 0.02157 0.02274 0.59% Castro::computeTemp() 63 0.01904 0.01982 0.02055 0.53% Castro::initialize_do_advance() 10 0.01275 0.01525 0.01881 0.49% VisMF::Write(FabArray) 2 0.008867 0.009505 0.01222 0.32% FabArray::Saxpy() 20 0.009899 0.01046 0.01155 0.30% MultiFab::contains_nan() 20 0.009841 0.01037 0.01101 0.29% Castro::initialize_advance() 10 0.006097 0.007211 0.01056 0.27% Castro::construct_new_source() 50 0.00547 0.006328 0.01048 0.27% FabArray::setDomainBndry() 41 0.007671 0.008297 0.008798 0.23% Castro::construct_old_gravity_source() 10 0.007678 0.00814 0.00861 0.22% Amr::coarseTimeStep() 10 0.002158 0.00725 0.008426 0.22% Castro::enforce_min_density() 62 0.007072 0.007272 0.007511 0.19% main() 1 0.003421 0.00382 0.004217 0.11% Gravity::get_new_grav_vector() 11 0.002908 0.003232 0.003522 0.09% Gravity::get_old_grav_vector() 10 0.001658 0.001865 0.002264 0.06% Castro::finalize_do_advance() 10 0.0005164 0.0006706 0.0009502 0.02% AmrLevel::FillPatch() 41 0.000623 0.0007288 0.0008199 0.02% Amr::timeStep() 10 0.0001605 0.0002237 0.0004722 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002753 0.000289 0.0002978 0.01% Castro::do_advance_ctu() 10 0.0001249 0.0001441 0.0001733 0.00% Castro::clean_state() 62 0.0001298 0.0001466 0.0001627 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001009 0.0001116 0.0001225 0.00% StateDataPhysBCFunct::() 41 8.888e-05 9.523e-05 0.0001026 0.00% Amr::FinalizeInit() 1 3.657e-06 1.666e-05 0.0001023 0.00% Castro::Castro() 1 8.42e-05 9.195e-05 0.0001019 0.00% Castro::do_old_sources() 10 7.084e-05 8.222e-05 9.858e-05 0.00% FabArray::ParallelCopy() 41 6.966e-05 7.365e-05 8.219e-05 0.00% Castro::do_new_sources() 10 5.106e-05 5.899e-05 8.061e-05 0.00% FillPatchSingleLevel 41 6.895e-05 7.202e-05 7.908e-05 0.00% Castro::construct_old_source() 50 5.528e-05 6.772e-05 7.57e-05 0.00% Castro::apply_source_to_state() 20 3.841e-05 4.569e-05 5.682e-05 0.00% Castro::subcycle_advance_ctu() 10 3.348e-05 4.368e-05 5.47e-05 0.00% Castro::construct_new_gravity() 10 3.134e-05 3.873e-05 5.308e-05 0.00% Castro::advance() 10 3.759e-05 4.368e-05 5.065e-05 0.00% Amr::defBaseLevel() 1 3.91e-05 4.275e-05 4.972e-05 0.00% Castro::construct_old_gravity() 10 3.285e-05 3.878e-05 4.685e-05 0.00% Castro::computeNewDt() 9 7.992e-06 1.677e-05 4.076e-05 0.00% Castro::check_for_nan() 20 2.151e-05 2.469e-05 2.99e-05 0.00% Castro::expand_state() 10 1.921e-05 2.263e-05 2.481e-05 0.00% Castro::post_timestep() 10 1.378e-05 1.617e-05 1.924e-05 0.00% Amr::InitializeInit() 1 2.737e-06 3.693e-06 6.013e-06 0.00% Castro::computeInitialDt() 2 2.765e-06 3.888e-06 4.919e-06 0.00% Amr::init() 1 1.914e-06 2.546e-06 4.243e-06 0.00% Castro::post_init() 1 2.13e-06 3.037e-06 4.139e-06 0.00% Amr::initialInit() 1 1.678e-06 1.983e-06 2.523e-06 0.00% Other 200 0.01621 0.01914 0.021 0.54% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.853 3.854 3.854 100.00% Amr::coarseTimeStep() 10 3.247 3.247 3.247 84.23% Amr::timeStep() 10 3.222 3.224 3.229 83.78% Castro::advance() 10 3.205 3.207 3.212 83.33% Castro::subcycle_advance_ctu() 10 3.126 3.139 3.146 81.61% Castro::do_advance_ctu() 10 3.126 3.139 3.145 81.61% Castro::construct_ctu_hydro_source() 10 2.42 2.422 2.424 62.89% Amr::init() 1 0.595 0.5953 0.5954 15.45% Amr::writePlotFile() 2 0.4287 0.4288 0.4289 11.13% Gravity::make_radial_gravity() 21 0.3059 0.3094 0.3139 8.14% AmrLevel::FillPatch() 41 0.1754 0.1975 0.209 5.42% Gravity::get_new_grav_vector() 11 0.2056 0.2067 0.2073 5.38% Castro::construct_old_gravity() 10 0.1827 0.1846 0.1879 4.87% Gravity::get_old_grav_vector() 10 0.182 0.1838 0.1868 4.85% Castro::construct_new_gravity() 10 0.1825 0.1834 0.1839 4.77% FillPatchIterator::Initialize 41 0.1462 0.1689 0.181 4.70% Amr::initialInit() 1 0.1737 0.1741 0.1743 4.52% Castro::initialize_do_advance() 10 0.1557 0.1667 0.1734 4.50% Amr::InitializeInit() 1 0.06693 0.1079 0.147 3.81% Amr::defBaseLevel() 1 0.06693 0.1079 0.147 3.81% check_for_negative_density() 10 0.03719 0.09026 0.1457 3.78% FillPatchIterator::FillFromLevel0() 41 0.1069 0.1294 0.1403 3.64% FillPatchSingleLevel 41 0.1068 0.1293 0.1401 3.64% Castro::initData() 1 0.05149 0.09111 0.1291 3.35% Castro::expand_state() 10 0.1003 0.1158 0.1251 3.25% Castro::clean_state() 62 0.1129 0.1165 0.1209 3.14% FabArray::ParallelCopy() 41 0.07617 0.09763 0.11 2.85% Castro::estTimeStep() 21 0.03821 0.07664 0.1095 2.84% Amr::FinalizeInit() 1 0.02716 0.06615 0.1073 2.78% Castro::do_old_sources() 10 0.08362 0.0869 0.09045 2.35% Castro::computeInitialDt() 2 0.002474 0.04144 0.08249 2.14% amrex::Copy() 193 0.06766 0.07301 0.07777 2.02% Castro::initialize_advance() 10 0.05783 0.06426 0.07737 2.01% FabArray::setVal() 143 0.05565 0.06357 0.07719 2.00% FabArray::ParallelCopy_finish() 41 0.03804 0.05999 0.07348 1.91% Castro::computeTemp() 63 0.06342 0.06701 0.07019 1.82% Castro::do_new_sources() 10 0.05681 0.06004 0.06676 1.73% Castro::reset_internal_energy(MultiFab) 63 0.04432 0.04719 0.04964 1.29% Castro::reset_internal_energy(Fab) 1008 0.04405 0.0469 0.04935 1.28% Castro::normalize_species() 62 0.04255 0.04301 0.0442 1.15% FabArray::ParallelCopy_nowait() 41 0.03644 0.03757 0.03852 1.00% StateDataPhysBCFunct::() 41 0.03005 0.03159 0.0328 0.85% StateData::FillBoundary(geom) 41 0.02996 0.0315 0.03271 0.85% Castro::construct_new_source() 50 0.02649 0.0279 0.03182 0.83% Gravity::interpolate_monopole_grav() 21 0.02786 0.02926 0.03053 0.79% Castro::finalize_do_advance() 10 0.01345 0.02147 0.02501 0.65% Castro::post_init() 1 0.02424 0.02442 0.02452 0.64% Castro::construct_new_gravity_source() 10 0.02089 0.02157 0.02274 0.59% Castro::post_timestep() 10 0.01585 0.01628 0.01702 0.44% Castro::computeNewDt() 9 0.01412 0.01442 0.01523 0.40% VisMF::Write(FabArray) 2 0.008867 0.009505 0.01222 0.32% Castro::apply_source_to_state() 20 0.009943 0.01051 0.01161 0.30% FabArray::Saxpy() 20 0.009899 0.01046 0.01155 0.30% Castro::Castro() 1 0.009601 0.01066 0.01141 0.30% Castro::check_for_nan() 20 0.009865 0.01039 0.01103 0.29% MultiFab::contains_nan() 20 0.009841 0.01037 0.01101 0.29% FabArray::setDomainBndry() 41 0.007671 0.008297 0.008798 0.23% Castro::construct_old_source() 50 0.007739 0.008207 0.008685 0.23% Castro::construct_old_gravity_source() 10 0.007678 0.00814 0.00861 0.22% Castro::enforce_min_density() 62 0.007072 0.007272 0.007511 0.19% Other 200 0.02593 0.03027 0.03411 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 36 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-16-gdcb9cc0383dc) finalized