Initializing AMReX (24.07-18-gfdea28f16727)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-18-gfdea28f16727) initialized Starting run at 05:23:40 UTC on 2024-07-18. Successfully read inputs file ... Castro git describe: 24.07-15-gb4b35ba86 AMReX git describe: 24.07-18-gfdea28f16 Microphysics git describe: 24.07-24-g17a2fa77 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015853647 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367621607 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.382812311 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.390905022 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.420550692 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.393797646 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.388681441 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.388796686 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.388418117 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.390374686 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.390638387 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012664833 seconds Ending run at 05:23:45 UTC on 2024-07-18. Run time = 4.110696659 Run time without initialization = 3.922704545 Average number of zones advanced per microsecond: 0.668 Average number of zones advanced per microsecond per rank: 0.084 TinyProfiler total time across processes [min...avg...max]: 4.11 ... 4.11 ... 4.111 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3901 2.6184 2.8372 69.02% check_for_negative_density() 10 0.01922 0.2459 0.4821 11.73% Gravity::make_radial_gravity() 21 0.2921 0.3095 0.3278 7.97% Castro::initData() 1 0.04814 0.08729 0.1224 2.98% amrex::Copy() 193 0.09986 0.1089 0.119 2.89% Castro::estTimeStep() 21 0.02266 0.06636 0.1106 2.69% FabArray::setVal() 143 0.09077 0.09766 0.1073 2.61% FabArray::ParallelCopy_finish() 41 0.04883 0.05737 0.06336 1.54% FabArray::ParallelCopy_nowait() 41 0.05676 0.05977 0.06248 1.52% Castro::normalize_species() 62 0.04332 0.04841 0.05578 1.36% FillPatchIterator::Initialize 41 0.04427 0.04988 0.05466 1.33% Castro::reset_internal_energy(Fab) 1008 0.04824 0.0504 0.05273 1.28% StateData::FillBoundary(geom) 41 0.03581 0.03968 0.0463 1.13% Castro::construct_new_gravity_source() 10 0.02852 0.03125 0.03405 0.83% Gravity::interpolate_monopole_grav() 21 0.0278 0.02923 0.02988 0.73% Castro::initialize_do_advance() 10 0.0221 0.02393 0.02524 0.61% Castro::computeTemp() 63 0.02026 0.02185 0.02364 0.57% FabArray::Saxpy() 20 0.01679 0.01852 0.02054 0.50% FabArray::setDomainBndry() 41 0.01579 0.01729 0.02034 0.49% Castro::initialize_advance() 10 0.01522 0.01611 0.01701 0.41% MultiFab::contains_nan() 20 0.01177 0.01426 0.0167 0.41% Castro::construct_old_gravity_source() 10 0.01412 0.01496 0.01538 0.37% VisMF::Write(FabArray) 2 0.009764 0.01115 0.01528 0.37% Amr::writePlotFile() 2 0.009686 0.01304 0.0144 0.35% Castro::construct_new_source() 50 0.00811 0.00871 0.009211 0.22% Castro::enforce_min_density() 62 0.007656 0.008365 0.008941 0.22% main() 1 0.005952 0.00647 0.006836 0.17% Gravity::get_new_grav_vector() 11 0.00335 0.004641 0.005811 0.14% Amr::coarseTimeStep() 10 0.001261 0.003451 0.005229 0.13% Gravity::get_old_grav_vector() 10 0.002502 0.002939 0.003569 0.09% Castro::finalize_do_advance() 10 0.0011 0.001166 0.001326 0.03% AmrLevel::FillPatch() 41 0.0008969 0.0009786 0.001098 0.03% Amr::timeStep() 10 0.0001655 0.0002447 0.0004019 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003189 0.0003316 0.0003473 0.01% Castro::do_advance_ctu() 10 0.0001628 0.0001877 0.0002375 0.01% Castro::clean_state() 62 0.0001703 0.0001971 0.0002266 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001382 0.0001544 0.0001792 0.00% Castro::do_old_sources() 10 8.986e-05 0.0001224 0.0001509 0.00% StateDataPhysBCFunct::() 41 0.0001148 0.0001289 0.0001375 0.00% Castro::Castro() 1 9.663e-05 0.0001139 0.0001348 0.00% Castro::construct_old_source() 50 7.683e-05 0.0001061 0.0001306 0.00% FabArray::ParallelCopy() 41 8.675e-05 0.0001024 0.0001194 0.00% FillPatchSingleLevel 41 8.217e-05 9.751e-05 0.0001097 0.00% Amr::FinalizeInit() 1 3.423e-06 1.693e-05 9.97e-05 0.00% Castro::do_new_sources() 10 6.17e-05 7.671e-05 9.045e-05 0.00% Castro::apply_source_to_state() 20 6.106e-05 7.126e-05 8.343e-05 0.00% Castro::subcycle_advance_ctu() 10 4.88e-05 6.157e-05 7.42e-05 0.00% Castro::advance() 10 4.233e-05 5.29e-05 5.979e-05 0.00% Castro::expand_state() 10 3.428e-05 4.628e-05 5.943e-05 0.00% Amr::defBaseLevel() 1 3.972e-05 4.552e-05 5.678e-05 0.00% Castro::construct_old_gravity() 10 3.975e-05 4.56e-05 5.631e-05 0.00% Castro::construct_new_gravity() 10 3.439e-05 4.174e-05 5.44e-05 0.00% Castro::check_for_nan() 20 2.392e-05 2.962e-05 3.735e-05 0.00% Castro::post_timestep() 10 1.613e-05 1.995e-05 2.728e-05 0.00% Castro::post_init() 1 2.524e-06 5.958e-06 1.274e-05 0.00% Castro::computeNewDt() 9 7.716e-06 1.014e-05 1.241e-05 0.00% Amr::initialInit() 1 1.568e-06 2.793e-06 8.735e-06 0.00% Amr::InitializeInit() 1 2.978e-06 3.874e-06 7.68e-06 0.00% Castro::computeInitialDt() 2 2.963e-06 3.577e-06 5.212e-06 0.00% Amr::init() 1 1.644e-06 2.252e-06 3.285e-06 0.00% Other 200 0.01722 0.02019 0.02147 0.52% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.11 4.11 4.111 100.00% Amr::coarseTimeStep() 10 3.903 3.903 3.903 94.95% Amr::timeStep() 10 3.888 3.89 3.892 94.68% Castro::advance() 10 3.872 3.873 3.873 94.23% Castro::subcycle_advance_ctu() 10 3.762 3.77 3.777 91.89% Castro::do_advance_ctu() 10 3.762 3.77 3.777 91.89% Castro::construct_ctu_hydro_source() 10 2.883 2.888 2.895 70.43% check_for_negative_density() 10 0.01922 0.2459 0.4821 11.73% Gravity::make_radial_gravity() 21 0.3119 0.3308 0.3497 8.51% AmrLevel::FillPatch() 41 0.2531 0.2696 0.2866 6.97% FillPatchIterator::Initialize 41 0.2138 0.2246 0.2397 5.83% Castro::initialize_do_advance() 10 0.2057 0.2179 0.2303 5.60% Gravity::get_new_grav_vector() 11 0.2267 0.2282 0.2298 5.59% Castro::construct_old_gravity() 10 0.1899 0.2028 0.2151 5.23% Gravity::get_old_grav_vector() 10 0.1891 0.2019 0.2143 5.21% Castro::construct_new_gravity() 10 0.2045 0.2058 0.2067 5.03% Amr::init() 1 0.1871 0.1873 0.1874 4.56% Amr::initialInit() 1 0.171 0.1715 0.1717 4.18% FillPatchIterator::FillFromLevel0() 41 0.153 0.1574 0.1649 4.01% FillPatchSingleLevel 41 0.1528 0.1573 0.1648 4.01% Castro::expand_state() 10 0.1392 0.1506 0.1613 3.92% Amr::InitializeInit() 1 0.06978 0.1092 0.145 3.53% Amr::defBaseLevel() 1 0.06977 0.1092 0.145 3.53% Castro::clean_state() 62 0.1201 0.1287 0.1393 3.39% Castro::do_old_sources() 10 0.1282 0.1322 0.1353 3.29% Castro::initData() 1 0.05201 0.09129 0.1266 3.08% FabArray::ParallelCopy() 41 0.1102 0.1174 0.1261 3.07% amrex::Copy() 193 0.09986 0.1089 0.119 2.89% Castro::estTimeStep() 21 0.02266 0.06636 0.1106 2.69% FabArray::setVal() 143 0.09077 0.09766 0.1073 2.61% Castro::initialize_advance() 10 0.09031 0.09751 0.1058 2.57% Amr::FinalizeInit() 1 0.02665 0.06234 0.1019 2.48% Castro::do_new_sources() 10 0.07494 0.0814 0.08769 2.13% Castro::computeInitialDt() 2 0.002252 0.03802 0.07746 1.88% Castro::computeTemp() 63 0.06882 0.07258 0.07654 1.86% FabArray::ParallelCopy_finish() 41 0.04883 0.05737 0.06336 1.54% FabArray::ParallelCopy_nowait() 41 0.05688 0.05989 0.06261 1.52% Castro::normalize_species() 62 0.04332 0.04841 0.05578 1.36% Castro::reset_internal_energy(MultiFab) 63 0.04856 0.05073 0.05307 1.29% Castro::reset_internal_energy(Fab) 1008 0.04824 0.0504 0.05273 1.28% StateDataPhysBCFunct::() 41 0.03595 0.03981 0.04644 1.13% StateData::FillBoundary(geom) 41 0.03581 0.03968 0.0463 1.13% Castro::construct_new_source() 50 0.03663 0.03996 0.04324 1.05% Castro::construct_new_gravity_source() 10 0.02852 0.03125 0.03405 0.83% Gravity::interpolate_monopole_grav() 21 0.0278 0.02923 0.02988 0.73% Amr::writePlotFile() 2 0.02848 0.02857 0.02882 0.70% Castro::finalize_do_advance() 10 0.01233 0.02053 0.02865 0.70% Castro::post_init() 1 0.02351 0.02375 0.02392 0.58% Castro::apply_source_to_state() 20 0.01685 0.01859 0.02063 0.50% FabArray::Saxpy() 20 0.01679 0.01852 0.02054 0.50% FabArray::setDomainBndry() 41 0.01579 0.01729 0.02034 0.49% Castro::post_timestep() 10 0.01538 0.01673 0.01851 0.45% Castro::check_for_nan() 20 0.0118 0.01429 0.01673 0.41% MultiFab::contains_nan() 20 0.01177 0.01426 0.0167 0.41% Castro::construct_old_source() 50 0.0142 0.01507 0.0155 0.38% Castro::construct_old_gravity_source() 10 0.01412 0.01496 0.01538 0.37% VisMF::Write(FabArray) 2 0.009764 0.01115 0.01528 0.37% Castro::Castro() 1 0.009337 0.01149 0.01228 0.30% Castro::computeNewDt() 9 0.008981 0.008987 0.008995 0.22% Castro::enforce_min_density() 62 0.007656 0.008365 0.008941 0.22% Other 200 0.02883 0.03315 0.03537 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 49 B 53 B 56 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-18-gfdea28f16727) finalized