Initializing AMReX (24.07-21-gcdacc4d908e0)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-21-gcdacc4d908e0) initialized Starting run at 05:30:10 UTC on 2024-07-19. Successfully read inputs file ... Castro git describe: 24.07-16-g39a7704b4 AMReX git describe: 24.07-21-gcdacc4d90 Microphysics git describe: 24.07-25-g83817c08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015534937 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351518589 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.366787934 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332721765 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330210367 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.382169465 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.32808749 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.338862005 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.319805213 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.320134462 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.321719236 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007895935 seconds Ending run at 05:30:14 UTC on 2024-07-19. Run time = 3.600142732 Run time without initialization = 3.406535266 Average number of zones advanced per microsecond: 0.770 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.599 ... 3.6 ... 3.6 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3349 2.3661 2.4135 67.04% Gravity::make_radial_gravity() 21 0.2924 0.3069 0.3233 8.98% check_for_negative_density() 10 0.07288 0.1215 0.1554 4.32% Castro::initData() 1 0.04902 0.08883 0.1268 3.52% Castro::estTimeStep() 21 0.02847 0.06744 0.1076 2.99% amrex::Copy() 193 0.06967 0.0846 0.09522 2.64% FabArray::ParallelCopy_finish() 41 0.04783 0.06526 0.08686 2.41% FabArray::setVal() 143 0.07164 0.07863 0.08647 2.40% FabArray::ParallelCopy_nowait() 41 0.04072 0.04506 0.04996 1.39% Castro::reset_internal_energy(Fab) 1008 0.04411 0.04669 0.04757 1.32% Castro::normalize_species() 62 0.04151 0.04244 0.04357 1.21% FillPatchIterator::Initialize 41 0.02742 0.0336 0.03738 1.04% StateData::FillBoundary(geom) 41 0.03105 0.03335 0.03531 0.98% Gravity::interpolate_monopole_grav() 21 0.02773 0.0292 0.03036 0.84% Castro::construct_new_gravity_source() 10 0.02357 0.02526 0.02637 0.73% Castro::initialize_do_advance() 10 0.01246 0.01648 0.02059 0.57% Castro::computeTemp() 63 0.01752 0.01932 0.02027 0.56% MultiFab::contains_nan() 20 0.01051 0.0121 0.01521 0.42% FabArray::Saxpy() 20 0.01131 0.01296 0.01379 0.38% Castro::initialize_advance() 10 0.009992 0.01158 0.01356 0.38% VisMF::Write(FabArray) 2 0.009423 0.009968 0.01277 0.35% Amr::writePlotFile() 2 0.008485 0.01213 0.01274 0.35% FabArray::setDomainBndry() 41 0.007622 0.01017 0.012 0.33% Castro::construct_old_gravity_source() 10 0.007454 0.009752 0.01066 0.30% Castro::initMFs() 1 0.00652 0.006989 0.008278 0.23% Castro::construct_new_source() 50 0.006494 0.006768 0.007077 0.20% main() 1 0.004273 0.00518 0.005801 0.16% Gravity::get_new_grav_vector() 11 0.003024 0.003529 0.003845 0.11% Amr::coarseTimeStep() 10 0.001461 0.001973 0.002537 0.07% Gravity::get_old_grav_vector() 10 0.001629 0.001994 0.00226 0.06% Castro::finalize_do_advance() 10 0.0005123 0.0009522 0.00116 0.03% AmrLevel::FillPatch() 41 0.0008559 0.0009375 0.00108 0.03% Amr::timeStep() 10 0.0001489 0.000248 0.000488 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002886 0.0003017 0.0003485 0.01% Castro::do_advance_ctu() 10 0.0001307 0.000152 0.000187 0.01% Castro::clean_state() 62 0.0001395 0.0001532 0.0001761 0.00% StateDataPhysBCFunct::() 41 0.0001 0.0001284 0.0001704 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001099 0.0001279 0.0001635 0.00% Castro::Castro() 1 6.97e-05 9.318e-05 0.0001159 0.00% FabArray::ParallelCopy() 41 7.423e-05 8.98e-05 0.0001122 0.00% Castro::do_old_sources() 10 7.542e-05 8.987e-05 0.0001045 0.00% FillPatchSingleLevel 41 6.976e-05 7.875e-05 9.613e-05 0.00% Amr::FinalizeInit() 1 3.721e-06 1.433e-05 8.514e-05 0.00% Castro::construct_old_source() 50 5.325e-05 6.814e-05 7.885e-05 0.00% Castro::do_new_sources() 10 5.222e-05 6.245e-05 7.502e-05 0.00% Castro::construct_old_gravity() 10 3.548e-05 4.28e-05 6.32e-05 0.00% Castro::apply_source_to_state() 20 4.471e-05 5.057e-05 6.271e-05 0.00% Castro::subcycle_advance_ctu() 10 4.199e-05 4.859e-05 5.562e-05 0.00% Castro::advance() 10 3.669e-05 4.542e-05 5.342e-05 0.00% Amr::defBaseLevel() 1 4.001e-05 4.506e-05 5.223e-05 0.00% Castro::construct_new_gravity() 10 3.135e-05 3.571e-05 4.457e-05 0.00% Castro::expand_state() 10 2.445e-05 3.023e-05 4.253e-05 0.00% Castro::check_for_nan() 20 2.132e-05 2.664e-05 3.408e-05 0.00% Castro::post_timestep() 10 1.254e-05 1.836e-05 2.524e-05 0.00% Castro::computeNewDt() 9 7.912e-06 1.009e-05 1.211e-05 0.00% Amr::initialInit() 1 1.841e-06 3.999e-06 1.03e-05 0.00% Castro::post_init() 1 2.32e-06 5.831e-06 9.471e-06 0.00% Amr::InitializeInit() 1 2.75e-06 3.601e-06 5.855e-06 0.00% Castro::computeInitialDt() 2 3.099e-06 3.724e-06 4.106e-06 0.00% Amr::init() 1 1.455e-06 2.342e-06 3.806e-06 0.00% Other 261 0.01747 0.02 0.02175 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.599 3.6 3.6 100.00% Amr::coarseTimeStep() 10 3.393 3.393 3.393 94.24% Amr::timeStep() 10 3.38 3.381 3.381 93.92% Castro::advance() 10 3.364 3.365 3.365 93.47% Castro::subcycle_advance_ctu() 10 3.275 3.282 3.292 91.42% Castro::do_advance_ctu() 10 3.275 3.282 3.291 91.42% Castro::construct_ctu_hydro_source() 10 2.507 2.509 2.512 69.77% Gravity::make_radial_gravity() 21 0.3095 0.3238 0.3369 9.36% AmrLevel::FillPatch() 41 0.2027 0.2232 0.2316 6.43% Gravity::get_new_grav_vector() 11 0.2113 0.2122 0.2126 5.91% Castro::construct_old_gravity() 10 0.1857 0.1984 0.2103 5.84% Gravity::get_old_grav_vector() 10 0.1846 0.1975 0.2091 5.81% FillPatchIterator::Initialize 41 0.1701 0.188 0.2033 5.65% Castro::initialize_do_advance() 10 0.1703 0.1857 0.1969 5.47% Amr::init() 1 0.1928 0.193 0.1931 5.36% Castro::construct_new_gravity() 10 0.1872 0.1884 0.1891 5.25% Amr::initialInit() 1 0.1758 0.1761 0.1771 4.92% FillPatchIterator::FillFromLevel0() 41 0.1235 0.1442 0.1674 4.65% FillPatchSingleLevel 41 0.1233 0.1441 0.1673 4.65% check_for_negative_density() 10 0.07288 0.1215 0.1554 4.32% Amr::InitializeInit() 1 0.06954 0.1097 0.1486 4.13% Amr::defBaseLevel() 1 0.06954 0.1097 0.1486 4.13% Castro::expand_state() 10 0.1137 0.1316 0.1413 3.93% FabArray::ParallelCopy() 41 0.09186 0.1105 0.136 3.78% Castro::initData() 1 0.05286 0.09267 0.1302 3.62% Castro::clean_state() 62 0.1104 0.1155 0.1171 3.25% Castro::estTimeStep() 21 0.02847 0.06744 0.1076 2.99% Amr::FinalizeInit() 1 0.02727 0.06642 0.1065 2.96% Castro::do_old_sources() 10 0.09703 0.09972 0.1028 2.85% amrex::Copy() 193 0.06967 0.0846 0.09522 2.64% FabArray::ParallelCopy_finish() 41 0.04783 0.06526 0.08686 2.41% FabArray::setVal() 143 0.07164 0.07863 0.08647 2.40% Castro::initialize_advance() 10 0.06816 0.07832 0.0853 2.37% Castro::computeInitialDt() 2 0.002469 0.04134 0.08154 2.26% Castro::do_new_sources() 10 0.06553 0.06703 0.06879 1.91% Castro::computeTemp() 63 0.06192 0.06631 0.06761 1.88% FabArray::ParallelCopy_nowait() 41 0.04081 0.04516 0.05006 1.39% Castro::reset_internal_energy(MultiFab) 63 0.0444 0.04699 0.04787 1.33% Castro::reset_internal_energy(Fab) 1008 0.04411 0.04669 0.04757 1.32% Castro::normalize_species() 62 0.04151 0.04244 0.04357 1.21% StateDataPhysBCFunct::() 41 0.03122 0.03348 0.03544 0.98% StateData::FillBoundary(geom) 41 0.03105 0.03335 0.03531 0.98% Castro::construct_new_source() 50 0.03006 0.03203 0.03307 0.92% Gravity::interpolate_monopole_grav() 21 0.02773 0.0292 0.03036 0.84% Castro::construct_new_gravity_source() 10 0.02357 0.02526 0.02637 0.73% Castro::post_init() 1 0.02449 0.02482 0.02587 0.72% Amr::writePlotFile() 2 0.02376 0.0249 0.02516 0.70% Castro::finalize_do_advance() 10 0.01669 0.01812 0.01997 0.55% Castro::post_timestep() 10 0.01513 0.01582 0.01612 0.45% Castro::check_for_nan() 20 0.01054 0.01212 0.01525 0.42% MultiFab::contains_nan() 20 0.01051 0.0121 0.01521 0.42% Castro::apply_source_to_state() 20 0.01136 0.01301 0.01386 0.38% FabArray::Saxpy() 20 0.01131 0.01296 0.01379 0.38% VisMF::Write(FabArray) 2 0.009423 0.009968 0.01277 0.35% FabArray::setDomainBndry() 41 0.007622 0.01017 0.012 0.33% Castro::Castro() 1 0.01049 0.01094 0.01184 0.33% Castro::construct_old_source() 50 0.007515 0.00982 0.01074 0.30% Castro::construct_old_gravity_source() 10 0.007454 0.009752 0.01066 0.30% Castro::computeNewDt() 9 0.008921 0.008935 0.008949 0.25% Castro::initMFs() 1 0.00652 0.006989 0.008278 0.23% Other 261 0.02865 0.03205 0.03502 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 42 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-21-gcdacc4d908e0) finalized