Initializing AMReX (24.07-26-g0c3273f5e591)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-26-g0c3273f5e591) initialized Starting run at 05:36:39 UTC on 2024-07-22. Successfully read inputs file ... Castro git describe: 24.07-17-gab2b6d81e AMReX git describe: 24.07-26-g0c3273f5e Microphysics git describe: 24.07-31-g4c8331df reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015547438 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351828564 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348787471 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.326320479 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.325046106 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.381519152 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.32036295 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311394079 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313677547 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309068229 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.307617005 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007492737 seconds Ending run at 05:36:43 UTC on 2024-07-22. Run time = 3.507810331 Run time without initialization = 3.307997343 Average number of zones advanced per microsecond: 0.792 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.507 ... 3.508 ... 3.508 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2580 2.3231 2.3963 68.31% Gravity::make_radial_gravity() 21 0.2953 0.3056 0.3198 9.12% check_for_negative_density() 10 0.04074 0.1166 0.1824 5.20% Castro::initData() 1 0.04965 0.08835 0.1333 3.80% Castro::estTimeStep() 21 0.03252 0.07439 0.1167 3.33% FabArray::ParallelCopy_finish() 41 0.04137 0.05698 0.09609 2.74% amrex::Copy() 193 0.06263 0.07866 0.08679 2.47% FabArray::setVal() 143 0.05152 0.06492 0.07067 2.01% Castro::reset_internal_energy(Fab) 1008 0.0429 0.04502 0.04765 1.36% Castro::normalize_species() 62 0.04128 0.04231 0.04292 1.22% FabArray::ParallelCopy_nowait() 41 0.03608 0.04003 0.04123 1.18% FillPatchIterator::Initialize 41 0.02747 0.0319 0.03451 0.98% StateData::FillBoundary(geom) 41 0.0309 0.03233 0.03442 0.98% Gravity::interpolate_monopole_grav() 21 0.0273 0.02951 0.03079 0.88% Castro::construct_new_gravity_source() 10 0.02247 0.02378 0.02583 0.74% Castro::computeTemp() 63 0.01746 0.01857 0.0199 0.57% Castro::initialize_do_advance() 10 0.01153 0.01582 0.01723 0.49% Castro::initialize_advance() 10 0.005255 0.01078 0.01376 0.39% FabArray::Saxpy() 20 0.01047 0.01203 0.01301 0.37% Amr::writePlotFile() 2 0.007786 0.01088 0.01297 0.37% VisMF::Write(FabArray) 2 0.008964 0.009783 0.01284 0.37% MultiFab::contains_nan() 20 0.009532 0.01067 0.01219 0.35% FabArray::setDomainBndry() 41 0.00719 0.009047 0.01003 0.29% Castro::construct_old_gravity_source() 10 0.00678 0.009004 0.009561 0.27% Castro::initMFs() 1 0.006528 0.007126 0.007639 0.22% Castro::construct_new_source() 50 0.005641 0.006257 0.006697 0.19% main() 1 0.003566 0.003971 0.004081 0.12% Gravity::get_new_grav_vector() 11 0.00268 0.003347 0.003788 0.11% Amr::coarseTimeStep() 10 0.001212 0.001803 0.002534 0.07% Gravity::get_old_grav_vector() 10 0.001545 0.001971 0.002391 0.07% Castro::finalize_do_advance() 10 0.0004793 0.0008943 0.001116 0.03% AmrLevel::FillPatch() 41 0.0006899 0.0008614 0.0009714 0.03% Amr::timeStep() 10 0.0001594 0.0002321 0.0005068 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002914 0.0003036 0.0003173 0.01% Castro::do_advance_ctu() 10 0.0001345 0.0001541 0.0001815 0.01% Castro::clean_state() 62 0.0001544 0.0001645 0.0001759 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001045 0.0001182 0.0001425 0.00% StateDataPhysBCFunct::() 41 8.53e-05 9.911e-05 0.0001117 0.00% Castro::Castro() 1 7.284e-05 8.265e-05 0.0001036 0.00% Castro::construct_old_source() 50 4.792e-05 7.668e-05 0.0001028 0.00% Castro::do_old_sources() 10 6.493e-05 8.803e-05 0.0001026 0.00% FabArray::ParallelCopy() 41 6.931e-05 8.49e-05 0.0001024 0.00% FillPatchSingleLevel 41 7.205e-05 7.917e-05 9.489e-05 0.00% Amr::FinalizeInit() 1 3.248e-06 1.35e-05 7.956e-05 0.00% Castro::do_new_sources() 10 5.063e-05 5.896e-05 6.497e-05 0.00% Castro::apply_source_to_state() 20 4.035e-05 4.706e-05 5.615e-05 0.00% Castro::subcycle_advance_ctu() 10 3.713e-05 4.681e-05 5.372e-05 0.00% Castro::advance() 10 3.534e-05 4.288e-05 4.91e-05 0.00% Castro::construct_old_gravity() 10 3.059e-05 3.896e-05 4.865e-05 0.00% Castro::construct_new_gravity() 10 3.164e-05 3.582e-05 4.138e-05 0.00% Amr::defBaseLevel() 1 3.122e-05 3.716e-05 4.092e-05 0.00% Castro::expand_state() 10 1.782e-05 2.562e-05 3.07e-05 0.00% Castro::check_for_nan() 20 2.276e-05 2.595e-05 2.873e-05 0.00% Castro::post_timestep() 10 1.343e-05 1.548e-05 1.67e-05 0.00% Castro::computeNewDt() 9 7.162e-06 9.723e-06 1.555e-05 0.00% Castro::post_init() 1 2.115e-06 4.153e-06 8.57e-06 0.00% Amr::InitializeInit() 1 2.537e-06 3.875e-06 5.807e-06 0.00% Castro::computeInitialDt() 2 3.067e-06 3.616e-06 4.245e-06 0.00% Amr::init() 1 2.041e-06 2.546e-06 3.615e-06 0.00% Amr::initialInit() 1 1.308e-06 1.796e-06 2.644e-06 0.00% Other 261 0.0173 0.0196 0.02142 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.507 3.508 3.508 100.00% Amr::coarseTimeStep() 10 3.297 3.297 3.297 93.97% Amr::timeStep() 10 3.284 3.285 3.285 93.65% Castro::advance() 10 3.269 3.269 3.269 93.20% Castro::subcycle_advance_ctu() 10 3.194 3.199 3.214 91.63% Castro::do_advance_ctu() 10 3.193 3.199 3.214 91.63% Castro::construct_ctu_hydro_source() 10 2.458 2.46 2.463 70.20% Gravity::make_radial_gravity() 21 0.3112 0.3216 0.3327 9.48% AmrLevel::FillPatch() 41 0.1832 0.2017 0.223 6.36% Gravity::get_new_grav_vector() 11 0.2106 0.212 0.2136 6.09% Castro::construct_old_gravity() 10 0.1865 0.1944 0.2032 5.79% Gravity::get_old_grav_vector() 10 0.1857 0.1937 0.2026 5.77% Amr::init() 1 0.1993 0.1994 0.1994 5.69% FillPatchIterator::Initialize 41 0.1532 0.1707 0.1984 5.66% Castro::construct_new_gravity() 10 0.1864 0.1872 0.188 5.36% Amr::initialInit() 1 0.1831 0.1838 0.1843 5.25% check_for_negative_density() 10 0.04074 0.1166 0.1824 5.20% Castro::initialize_do_advance() 10 0.157 0.161 0.1678 4.78% FillPatchIterator::FillFromLevel0() 41 0.1153 0.1298 0.1637 4.67% FillPatchSingleLevel 41 0.1152 0.1297 0.1636 4.66% Amr::InitializeInit() 1 0.06876 0.1092 0.1551 4.42% Amr::defBaseLevel() 1 0.06875 0.1092 0.1551 4.42% Castro::initData() 1 0.05339 0.09207 0.137 3.91% FabArray::ParallelCopy() 41 0.08166 0.09718 0.1323 3.77% Castro::expand_state() 10 0.1035 0.1091 0.1211 3.45% Castro::clean_state() 62 0.1106 0.1129 0.1177 3.35% Castro::estTimeStep() 21 0.03252 0.07439 0.1167 3.33% Amr::FinalizeInit() 1 0.0281 0.07456 0.1148 3.27% Castro::do_old_sources() 10 0.0901 0.09754 0.102 2.91% FabArray::ParallelCopy_finish() 41 0.04137 0.05698 0.09609 2.74% Castro::computeInitialDt() 2 0.002312 0.04815 0.08848 2.52% amrex::Copy() 193 0.06263 0.07866 0.08679 2.47% Castro::initialize_advance() 10 0.05089 0.06697 0.07217 2.06% FabArray::setVal() 143 0.05152 0.06492 0.07067 2.01% Castro::do_new_sources() 10 0.05843 0.06224 0.06798 1.94% Castro::computeTemp() 63 0.06116 0.06389 0.06782 1.93% Castro::reset_internal_energy(MultiFab) 63 0.0432 0.04533 0.04796 1.37% Castro::reset_internal_energy(Fab) 1008 0.0429 0.04502 0.04765 1.36% Castro::normalize_species() 62 0.04128 0.04231 0.04292 1.22% FabArray::ParallelCopy_nowait() 41 0.03617 0.04011 0.04132 1.18% StateDataPhysBCFunct::() 41 0.031 0.03243 0.03451 0.98% StateData::FillBoundary(geom) 41 0.0309 0.03233 0.03442 0.98% Castro::construct_new_source() 50 0.02852 0.03004 0.03233 0.92% Gravity::interpolate_monopole_grav() 21 0.0273 0.02951 0.03079 0.88% Castro::post_init() 1 0.02542 0.02606 0.02647 0.75% Castro::construct_new_gravity_source() 10 0.02247 0.02378 0.02583 0.74% Amr::writePlotFile() 2 0.02273 0.0232 0.02381 0.68% Castro::finalize_do_advance() 10 0.01197 0.01834 0.02189 0.62% Castro::post_timestep() 10 0.01511 0.01552 0.01584 0.45% Castro::apply_source_to_state() 20 0.01051 0.01207 0.01306 0.37% FabArray::Saxpy() 20 0.01047 0.01203 0.01301 0.37% VisMF::Write(FabArray) 2 0.008964 0.009783 0.01284 0.37% Castro::check_for_nan() 20 0.009555 0.01069 0.01222 0.35% MultiFab::contains_nan() 20 0.009532 0.01067 0.01219 0.35% Castro::Castro() 1 0.009798 0.01104 0.01194 0.34% FabArray::setDomainBndry() 41 0.00719 0.009047 0.01003 0.29% Castro::construct_old_source() 50 0.006828 0.009081 0.009644 0.27% Castro::construct_old_gravity_source() 10 0.00678 0.009004 0.009561 0.27% Castro::computeNewDt() 9 0.008786 0.008803 0.008814 0.25% Castro::initMFs() 1 0.006528 0.007126 0.007639 0.22% Other 261 0.02725 0.03047 0.03321 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-26-g0c3273f5e591) finalized