Initializing AMReX (24.07-27-g3e4a2d58f789)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-27-g3e4a2d58f789) initialized Starting run at 05:21:38 UTC on 2024-07-23. Successfully read inputs file ... Castro git describe: 24.07-18-g56f51f6c1 AMReX git describe: 24.07-27-g3e4a2d58f Microphysics git describe: 24.07-31-g4c8331df reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014912399 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.343023508 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.331137028 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.347603527 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332007303 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.371711254 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.31645105 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309090805 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307702721 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309746625 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309776303 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007716362 seconds Ending run at 05:21:42 UTC on 2024-07-23. Run time = 3.480077966 Run time without initialization = 3.290940806 Average number of zones advanced per microsecond: 0.797 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.48 ... 3.48 ... 3.48 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2851 2.3250 2.3897 68.67% Gravity::make_radial_gravity() 21 0.2853 0.2954 0.3098 8.90% check_for_negative_density() 10 0.03155 0.09935 0.141 4.05% Castro::initData() 1 0.04848 0.08785 0.1225 3.52% Castro::estTimeStep() 21 0.02462 0.06342 0.106 3.04% FabArray::ParallelCopy_finish() 41 0.03577 0.05903 0.1029 2.96% amrex::Copy() 193 0.06619 0.08125 0.09607 2.76% FabArray::setVal() 143 0.05121 0.06508 0.07304 2.10% Castro::reset_internal_energy(Fab) 1008 0.04228 0.04558 0.0486 1.40% Castro::normalize_species() 62 0.04131 0.0421 0.04273 1.23% FabArray::ParallelCopy_nowait() 41 0.03588 0.03974 0.04125 1.19% FillPatchIterator::Initialize 41 0.0272 0.03289 0.03762 1.08% StateData::FillBoundary(geom) 41 0.02941 0.03201 0.03422 0.98% Gravity::interpolate_monopole_grav() 21 0.02695 0.02891 0.0301 0.86% Castro::construct_new_gravity_source() 10 0.02238 0.02344 0.02449 0.70% Castro::computeTemp() 63 0.01669 0.0189 0.02011 0.58% Castro::initialize_do_advance() 10 0.01141 0.01574 0.01741 0.50% Castro::construct_old_gravity_source() 10 0.006667 0.01098 0.01578 0.45% FabArray::Saxpy() 20 0.01037 0.01241 0.01461 0.42% Castro::initialize_advance() 10 0.005308 0.01045 0.01315 0.38% VisMF::Write(FabArray) 2 0.009314 0.00987 0.01289 0.37% FabArray::setDomainBndry() 41 0.007245 0.009905 0.01239 0.36% MultiFab::contains_nan() 20 0.009715 0.01085 0.01172 0.34% Amr::writePlotFile() 2 0.007861 0.009884 0.01031 0.30% Castro::initMFs() 1 0.00684 0.007426 0.007775 0.22% Castro::construct_new_source() 50 0.005709 0.006143 0.006619 0.19% Castro::do_old_sources() 10 7.75e-05 0.0008287 0.005855 0.17% main() 1 0.003705 0.004034 0.004193 0.12% Gravity::get_new_grav_vector() 11 0.003017 0.003411 0.00413 0.12% Amr::coarseTimeStep() 10 0.001064 0.002228 0.003269 0.09% Gravity::get_old_grav_vector() 10 0.001505 0.002 0.002425 0.07% AmrLevel::FillPatch() 41 0.0006587 0.001005 0.00118 0.03% Castro::finalize_do_advance() 10 0.0003824 0.000932 0.001163 0.03% Amr::timeStep() 10 0.0001726 0.0002199 0.0004075 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002868 0.0003008 0.0003123 0.01% Castro::do_advance_ctu() 10 0.0001299 0.0001705 0.0002114 0.01% Castro::clean_state() 62 0.0001412 0.000164 0.0001778 0.01% FillPatchIterator::FillFromLevel0() 41 0.000107 0.000116 0.0001302 0.00% StateDataPhysBCFunct::() 41 9.518e-05 0.0001028 0.0001147 0.00% Castro::construct_old_source() 50 5.079e-05 8.336e-05 0.000114 0.00% Castro::Castro() 1 7.731e-05 8.656e-05 9.495e-05 0.00% FillPatchSingleLevel 41 7.359e-05 8.11e-05 9.059e-05 0.00% FabArray::ParallelCopy() 41 7.69e-05 8.369e-05 8.866e-05 0.00% Amr::FinalizeInit() 1 4.248e-06 1.414e-05 7.815e-05 0.00% Castro::do_new_sources() 10 5.241e-05 5.971e-05 7.09e-05 0.00% Castro::subcycle_advance_ctu() 10 4.012e-05 4.668e-05 6.457e-05 0.00% Castro::apply_source_to_state() 20 4.047e-05 4.841e-05 6.454e-05 0.00% Castro::advance() 10 3.962e-05 4.482e-05 5.327e-05 0.00% Castro::construct_new_gravity() 10 3.043e-05 3.691e-05 4.399e-05 0.00% Castro::construct_old_gravity() 10 3.184e-05 3.822e-05 4.247e-05 0.00% Amr::defBaseLevel() 1 2.953e-05 3.352e-05 3.847e-05 0.00% Castro::expand_state() 10 1.621e-05 2.312e-05 3.136e-05 0.00% Castro::check_for_nan() 20 2.332e-05 2.52e-05 2.833e-05 0.00% Castro::post_timestep() 10 1.398e-05 1.499e-05 1.766e-05 0.00% Castro::post_init() 1 2.708e-06 5.11e-06 1.141e-05 0.00% Castro::computeNewDt() 9 7.584e-06 8.272e-06 8.994e-06 0.00% Amr::InitializeInit() 1 2.91e-06 3.779e-06 7.396e-06 0.00% Castro::computeInitialDt() 2 3.153e-06 3.703e-06 4.433e-06 0.00% Amr::init() 1 2.203e-06 2.399e-06 2.685e-06 0.00% Amr::initialInit() 1 1.533e-06 1.977e-06 2.581e-06 0.00% Other 261 0.01668 0.02009 0.02158 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.48 3.48 3.48 100.00% Amr::coarseTimeStep() 10 3.279 3.279 3.279 94.23% Amr::timeStep() 10 3.265 3.266 3.268 93.89% Castro::advance() 10 3.25 3.251 3.251 93.42% Castro::subcycle_advance_ctu() 10 3.176 3.181 3.197 91.86% Castro::do_advance_ctu() 10 3.176 3.181 3.197 91.86% Castro::construct_ctu_hydro_source() 10 2.44 2.445 2.449 70.38% Gravity::make_radial_gravity() 21 0.302 0.3115 0.3243 9.32% AmrLevel::FillPatch() 41 0.187 0.2059 0.227 6.52% Gravity::get_new_grav_vector() 11 0.208 0.2097 0.2117 6.08% FillPatchIterator::Initialize 41 0.1558 0.174 0.2031 5.84% Castro::construct_old_gravity() 10 0.1786 0.1844 0.1956 5.62% Gravity::get_old_grav_vector() 10 0.1778 0.1838 0.1949 5.60% Amr::init() 1 0.1884 0.1887 0.1887 5.42% Castro::construct_new_gravity() 10 0.1834 0.1845 0.1858 5.34% Amr::initialInit() 1 0.1733 0.1741 0.1742 5.01% FillPatchIterator::FillFromLevel0() 41 0.111 0.1312 0.1686 4.85% FillPatchSingleLevel 41 0.1109 0.1311 0.1685 4.84% Castro::initialize_do_advance() 10 0.1565 0.1611 0.1654 4.75% Amr::InitializeInit() 1 0.06867 0.1098 0.1449 4.16% Amr::defBaseLevel() 1 0.06866 0.1098 0.1449 4.16% check_for_negative_density() 10 0.03155 0.09935 0.141 4.05% FabArray::ParallelCopy() 41 0.07718 0.09894 0.1389 3.99% Castro::initData() 1 0.05255 0.09172 0.1259 3.62% Castro::expand_state() 10 0.1034 0.1091 0.1188 3.41% Castro::clean_state() 62 0.1071 0.1134 0.1184 3.40% Castro::do_old_sources() 10 0.09591 0.1076 0.1167 3.35% Castro::estTimeStep() 21 0.02462 0.06342 0.106 3.04% Amr::FinalizeInit() 1 0.02927 0.06429 0.1056 3.03% FabArray::ParallelCopy_finish() 41 0.03577 0.05903 0.1029 2.96% amrex::Copy() 193 0.06619 0.08125 0.09607 2.76% Castro::computeInitialDt() 2 0.00224 0.03732 0.07851 2.26% FabArray::setVal() 143 0.05121 0.06508 0.07304 2.10% Castro::initialize_advance() 10 0.05011 0.06661 0.07147 2.05% Castro::computeTemp() 63 0.05927 0.06478 0.06901 1.98% Castro::do_new_sources() 10 0.0581 0.06138 0.06542 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04257 0.04588 0.04891 1.41% Castro::reset_internal_energy(Fab) 1008 0.04228 0.04558 0.0486 1.40% Castro::normalize_species() 62 0.04131 0.0421 0.04273 1.23% FabArray::ParallelCopy_nowait() 41 0.03597 0.03982 0.04133 1.19% StateDataPhysBCFunct::() 41 0.02951 0.03211 0.03432 0.99% StateData::FillBoundary(geom) 41 0.02941 0.03201 0.03422 0.98% Castro::construct_new_source() 50 0.02832 0.02959 0.03111 0.89% Gravity::interpolate_monopole_grav() 21 0.02695 0.02891 0.0301 0.86% Castro::post_init() 1 0.02584 0.02646 0.02666 0.77% Castro::construct_new_gravity_source() 10 0.02238 0.02344 0.02449 0.70% Amr::writePlotFile() 2 0.02232 0.02241 0.02289 0.66% Castro::finalize_do_advance() 10 0.01283 0.01773 0.02203 0.63% Castro::post_timestep() 10 0.01455 0.01553 0.01636 0.47% Castro::construct_old_source() 50 0.006718 0.01107 0.0159 0.46% Castro::construct_old_gravity_source() 10 0.006667 0.01098 0.01578 0.45% Castro::apply_source_to_state() 20 0.01041 0.01246 0.01468 0.42% FabArray::Saxpy() 20 0.01037 0.01241 0.01461 0.42% VisMF::Write(FabArray) 2 0.009314 0.00987 0.01289 0.37% Castro::Castro() 1 0.01006 0.01155 0.01242 0.36% FabArray::setDomainBndry() 41 0.007245 0.009905 0.01239 0.36% Castro::check_for_nan() 20 0.009739 0.01088 0.01175 0.34% MultiFab::contains_nan() 20 0.009715 0.01085 0.01172 0.34% Castro::computeNewDt() 9 0.009293 0.009307 0.009323 0.27% Castro::initMFs() 1 0.00684 0.007426 0.007775 0.22% Other 261 0.02699 0.03144 0.03349 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 39 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-27-g3e4a2d58f789) finalized