Initializing AMReX (24.07-29-g3cb7f1555494)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-29-g3cb7f1555494) initialized Starting run at 18:32:55 UTC on 2024-07-24. Successfully read inputs file ... Castro git describe: 24.07-21-g0eb0cc813 AMReX git describe: 24.07-29-g3cb7f1555 Microphysics git describe: 24.07-31-g4c8331df reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014809783 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.34911548 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.353128837 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.336877227 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.334258274 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.385917198 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.317646209 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.30943045 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.31083109 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.309937279 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.311814899 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007489239 seconds Ending run at 18:32:59 UTC on 2024-07-24. Run time = 3.518320163 Run time without initialization = 3.331113992 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.517 ... 3.518 ... 3.518 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2681 2.3403 2.3790 67.62% Gravity::make_radial_gravity() 21 0.2931 0.3065 0.3178 9.03% check_for_negative_density() 10 0.04644 0.08683 0.1613 4.58% Castro::initData() 1 0.04907 0.08747 0.1237 3.52% Castro::estTimeStep() 21 0.02426 0.06266 0.1028 2.92% amrex::Copy() 193 0.08095 0.08586 0.08975 2.55% FabArray::setVal() 143 0.06867 0.07078 0.07487 2.13% FabArray::ParallelCopy_finish() 41 0.05265 0.05913 0.06636 1.89% Castro::reset_internal_energy(Fab) 1008 0.04465 0.04849 0.05406 1.54% Castro::normalize_species() 62 0.04128 0.04255 0.04791 1.36% FabArray::ParallelCopy_nowait() 41 0.03931 0.04201 0.04384 1.25% StateData::FillBoundary(geom) 41 0.03119 0.03412 0.03606 1.03% FillPatchIterator::Initialize 41 0.0292 0.03359 0.03525 1.00% Gravity::interpolate_monopole_grav() 21 0.02755 0.02939 0.03034 0.86% Castro::construct_new_gravity_source() 10 0.02371 0.02506 0.02683 0.76% Castro::computeTemp() 63 0.01809 0.01958 0.02042 0.58% Castro::initialize_do_advance() 10 0.01638 0.01754 0.01917 0.54% Castro::initialize_advance() 10 0.01073 0.0125 0.01463 0.42% MultiFab::contains_nan() 20 0.01046 0.01198 0.01429 0.41% FabArray::setDomainBndry() 41 0.007669 0.01132 0.01365 0.39% FabArray::Saxpy() 20 0.01185 0.01267 0.01338 0.38% VisMF::Write(FabArray) 2 0.009379 0.009815 0.01225 0.35% Amr::writePlotFile() 2 0.007375 0.009819 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.009045 0.009421 0.009755 0.28% Castro::initMFs() 1 0.006415 0.006847 0.008484 0.24% Castro::construct_new_source() 50 0.006235 0.006486 0.006681 0.19% Gravity::get_old_grav_vector() 10 0.00178 0.002435 0.004196 0.12% main() 1 0.003071 0.003871 0.004154 0.12% Gravity::get_new_grav_vector() 11 0.003145 0.003573 0.003907 0.11% Amr::coarseTimeStep() 10 0.0008886 0.00151 0.002036 0.06% Castro::finalize_do_advance() 10 0.001001 0.00112 0.001234 0.04% AmrLevel::FillPatch() 41 0.0009073 0.001037 0.001223 0.03% Amr::timeStep() 10 0.0001856 0.0002309 0.0004404 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002945 0.0003227 0.0003567 0.01% Castro::do_advance_ctu() 10 0.0001332 0.0001714 0.0002022 0.01% Castro::clean_state() 62 0.0001464 0.0001741 0.0001926 0.01% StateDataPhysBCFunct::() 41 0.0001003 0.0001272 0.0001793 0.01% FillPatchIterator::FillFromLevel0() 41 0.000111 0.0001308 0.000152 0.00% Castro::Castro() 1 6.055e-05 9.378e-05 0.0001311 0.00% FabArray::ParallelCopy() 41 7.924e-05 9.127e-05 0.0001207 0.00% FillPatchSingleLevel 41 7.541e-05 8.9e-05 0.0001116 0.00% Castro::do_old_sources() 10 8.25e-05 9.272e-05 0.0001065 0.00% Amr::FinalizeInit() 1 3.84e-06 1.502e-05 8.714e-05 0.00% Castro::construct_old_source() 50 6.684e-05 7.206e-05 7.897e-05 0.00% Castro::do_new_sources() 10 5.109e-05 6.313e-05 7.418e-05 0.00% Castro::advance() 10 3.798e-05 4.726e-05 6.075e-05 0.00% Castro::apply_source_to_state() 20 4.458e-05 4.969e-05 5.462e-05 0.00% Castro::subcycle_advance_ctu() 10 3.891e-05 4.966e-05 5.412e-05 0.00% Amr::defBaseLevel() 1 3.317e-05 3.991e-05 5.06e-05 0.00% Castro::construct_old_gravity() 10 3.072e-05 4.449e-05 5.024e-05 0.00% Castro::construct_new_gravity() 10 3.199e-05 3.635e-05 4.586e-05 0.00% Castro::expand_state() 10 1.964e-05 2.579e-05 3.284e-05 0.00% Castro::check_for_nan() 20 2.358e-05 2.703e-05 3.047e-05 0.00% Castro::post_init() 1 8.599e-06 1.284e-05 2.258e-05 0.00% Castro::post_timestep() 10 1.203e-05 1.58e-05 2.142e-05 0.00% Castro::computeNewDt() 9 8.088e-06 9.679e-06 1.499e-05 0.00% Castro::computeInitialDt() 2 3.647e-06 4.34e-06 5.321e-06 0.00% Amr::InitializeInit() 1 2.479e-06 3.234e-06 5.252e-06 0.00% Amr::init() 1 2.204e-06 2.622e-06 3.436e-06 0.00% Amr::initialInit() 1 1.347e-06 1.652e-06 2.024e-06 0.00% Other 261 0.01761 0.01972 0.02129 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.517 3.518 3.518 100.00% Amr::coarseTimeStep() 10 3.32 3.32 3.32 94.35% Amr::timeStep() 10 3.307 3.308 3.309 94.04% Castro::advance() 10 3.292 3.292 3.292 93.57% Castro::subcycle_advance_ctu() 10 3.215 3.216 3.217 91.43% Castro::do_advance_ctu() 10 3.215 3.216 3.217 91.43% Castro::construct_ctu_hydro_source() 10 2.438 2.448 2.452 69.70% Gravity::make_radial_gravity() 21 0.3097 0.3238 0.3332 9.47% AmrLevel::FillPatch() 41 0.1972 0.2157 0.2283 6.49% Castro::construct_old_gravity() 10 0.1898 0.2029 0.2166 6.16% Gravity::get_old_grav_vector() 10 0.1887 0.2022 0.2158 6.13% Gravity::get_new_grav_vector() 11 0.2091 0.2104 0.2112 6.00% FillPatchIterator::Initialize 41 0.1673 0.1807 0.1893 5.38% Castro::construct_new_gravity() 10 0.1863 0.1871 0.1877 5.34% Amr::init() 1 0.1867 0.1868 0.1868 5.31% Castro::initialize_do_advance() 10 0.1625 0.1724 0.1828 5.20% Amr::initialInit() 1 0.1717 0.1718 0.1719 4.89% check_for_negative_density() 10 0.04644 0.08683 0.1613 4.58% Amr::InitializeInit() 1 0.06995 0.1081 0.1445 4.11% Amr::defBaseLevel() 1 0.06995 0.1081 0.1445 4.11% FillPatchIterator::FillFromLevel0() 41 0.1271 0.1358 0.1434 4.08% FillPatchSingleLevel 41 0.127 0.1357 0.1433 4.07% Castro::initData() 1 0.05291 0.09135 0.1277 3.63% Castro::clean_state() 62 0.1125 0.1178 0.125 3.55% Castro::expand_state() 10 0.1079 0.114 0.1192 3.39% Castro::do_old_sources() 10 0.09273 0.1056 0.1175 3.34% FabArray::ParallelCopy() 41 0.09375 0.1013 0.1087 3.09% Castro::estTimeStep() 21 0.02426 0.06266 0.1028 2.92% Amr::FinalizeInit() 1 0.02735 0.06372 0.1019 2.90% amrex::Copy() 193 0.08095 0.08586 0.08975 2.55% Castro::computeInitialDt() 2 0.002284 0.03868 0.07686 2.18% FabArray::setVal() 143 0.06867 0.07078 0.07487 2.13% Castro::computeTemp() 63 0.06305 0.06839 0.07475 2.12% Castro::initialize_advance() 10 0.07154 0.07248 0.07398 2.10% Castro::do_new_sources() 10 0.06282 0.06548 0.06851 1.95% FabArray::ParallelCopy_finish() 41 0.05265 0.05913 0.06636 1.89% Castro::reset_internal_energy(MultiFab) 63 0.04496 0.04881 0.05442 1.55% Castro::reset_internal_energy(Fab) 1008 0.04465 0.04849 0.05406 1.54% Castro::normalize_species() 62 0.04128 0.04255 0.04791 1.36% FabArray::ParallelCopy_nowait() 41 0.03941 0.0421 0.04392 1.25% StateDataPhysBCFunct::() 41 0.03137 0.03425 0.03617 1.03% StateData::FillBoundary(geom) 41 0.03119 0.03412 0.03606 1.03% Castro::construct_new_source() 50 0.03023 0.03155 0.03315 0.94% Gravity::interpolate_monopole_grav() 21 0.02755 0.02939 0.03034 0.86% Castro::construct_new_gravity_source() 10 0.02371 0.02506 0.02683 0.76% Castro::post_init() 1 0.02443 0.02453 0.02465 0.70% Amr::writePlotFile() 2 0.0225 0.02257 0.02271 0.65% Castro::finalize_do_advance() 10 0.0133 0.0161 0.01907 0.54% Castro::post_timestep() 10 0.01533 0.01577 0.01619 0.46% Castro::check_for_nan() 20 0.01048 0.01201 0.01432 0.41% MultiFab::contains_nan() 20 0.01046 0.01198 0.01429 0.41% FabArray::setDomainBndry() 41 0.007669 0.01132 0.01365 0.39% Castro::apply_source_to_state() 20 0.0119 0.01272 0.01343 0.38% FabArray::Saxpy() 20 0.01185 0.01267 0.01338 0.38% VisMF::Write(FabArray) 2 0.009379 0.009815 0.01225 0.35% Castro::Castro() 1 0.01024 0.011 0.01194 0.34% Castro::construct_old_source() 50 0.009116 0.009493 0.009833 0.28% Castro::construct_old_gravity_source() 10 0.009045 0.009421 0.009755 0.28% Castro::computeNewDt() 9 0.00899 0.009014 0.009035 0.26% Castro::initMFs() 1 0.006415 0.006847 0.008484 0.24% Other 261 0.02749 0.03033 0.03267 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 37 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-29-g3cb7f1555494) finalized