Initializing AMReX (24.07-29-g3cb7f1555494)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-29-g3cb7f1555494) initialized Starting run at 05:23:02 UTC on 2024-07-24. Successfully read inputs file ... Castro git describe: 24.07-18-g56f51f6c1 AMReX git describe: 24.07-29-g3cb7f1555 Microphysics git describe: 24.07-31-g4c8331df reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014825519 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.339651942 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350992891 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332124864 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332901832 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.388417796 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.317432956 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309558607 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.358824876 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.324882813 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.338501986 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007528897 seconds Ending run at 05:23:05 UTC on 2024-07-24. Run time = 3.617217492 Run time without initialization = 3.405961614 Average number of zones advanced per microsecond: 0.770 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.616 ... 3.617 ... 3.617 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2874 2.3417 2.3825 65.86% Gravity::make_radial_gravity() 21 0.3125 0.3279 0.3424 9.47% check_for_negative_density() 10 0.09987 0.155 0.2135 5.90% Castro::initData() 1 0.05151 0.09122 0.1439 3.98% Castro::estTimeStep() 21 0.02889 0.08489 0.1208 3.34% FabArray::ParallelCopy_finish() 41 0.05086 0.06323 0.1067 2.95% amrex::Copy() 193 0.06698 0.07911 0.08661 2.39% FabArray::setVal() 143 0.05251 0.06528 0.0714 1.97% Castro::reset_internal_energy(Fab) 1008 0.04314 0.0478 0.05203 1.44% Castro::normalize_species() 62 0.04143 0.04469 0.0503 1.39% FabArray::ParallelCopy_nowait() 41 0.03623 0.04056 0.04303 1.19% StateData::FillBoundary(geom) 41 0.03002 0.03327 0.03582 0.99% FillPatchIterator::Initialize 41 0.02672 0.03193 0.0348 0.96% Gravity::interpolate_monopole_grav() 21 0.02815 0.02957 0.03039 0.84% Castro::construct_new_gravity_source() 10 0.0225 0.02391 0.02545 0.70% Castro::computeTemp() 63 0.01812 0.02001 0.02138 0.59% Castro::initialize_do_advance() 10 0.01181 0.01675 0.01855 0.51% MultiFab::contains_nan() 20 0.009593 0.01091 0.01378 0.38% FabArray::Saxpy() 20 0.01043 0.01208 0.01363 0.38% Castro::initialize_advance() 10 0.005588 0.0108 0.01337 0.37% Amr::writePlotFile() 2 0.007255 0.01055 0.01291 0.36% VisMF::Write(FabArray) 2 0.008836 0.009606 0.0124 0.34% FabArray::setDomainBndry() 41 0.007189 0.009663 0.01198 0.33% Castro::construct_old_gravity_source() 10 0.006369 0.008816 0.009793 0.27% Castro::initMFs() 1 0.00626 0.00692 0.007269 0.20% Castro::construct_new_source() 50 0.005853 0.006538 0.00699 0.19% main() 1 0.003425 0.003887 0.004434 0.12% Gravity::get_old_grav_vector() 10 0.001582 0.002347 0.004203 0.12% Amr::coarseTimeStep() 10 0.001435 0.002882 0.003771 0.10% Gravity::get_new_grav_vector() 11 0.002658 0.003251 0.003748 0.10% Castro::finalize_do_advance() 10 0.0004238 0.0009127 0.0009931 0.03% AmrLevel::FillPatch() 41 0.0006918 0.0007508 0.0008166 0.02% Amr::timeStep() 10 0.0001688 0.0002328 0.0004509 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002806 0.0003023 0.0003367 0.01% Castro::do_advance_ctu() 10 0.0001415 0.0001623 0.0001875 0.01% Castro::clean_state() 62 0.0001447 0.0001628 0.0001731 0.00% StateDataPhysBCFunct::() 41 9.28e-05 0.0001115 0.0001617 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001034 0.0001246 0.0001527 0.00% Castro::Castro() 1 6.404e-05 8.676e-05 0.0001209 0.00% Castro::do_old_sources() 10 7.378e-05 9.034e-05 0.0001123 0.00% FillPatchSingleLevel 41 7.399e-05 8.656e-05 9.523e-05 0.00% FabArray::ParallelCopy() 41 7.693e-05 8.268e-05 9.383e-05 0.00% Castro::construct_old_source() 50 5.814e-05 7.285e-05 8.566e-05 0.00% Amr::FinalizeInit() 1 3.319e-06 1.356e-05 7.971e-05 0.00% Castro::do_new_sources() 10 5.762e-05 6.413e-05 7.388e-05 0.00% Castro::subcycle_advance_ctu() 10 4.294e-05 4.865e-05 5.974e-05 0.00% Castro::construct_old_gravity() 10 3.155e-05 4.25e-05 5.287e-05 0.00% Castro::apply_source_to_state() 20 4.175e-05 4.633e-05 5.196e-05 0.00% Castro::advance() 10 3.938e-05 4.353e-05 4.947e-05 0.00% Amr::defBaseLevel() 1 3.04e-05 3.776e-05 4.842e-05 0.00% Castro::construct_new_gravity() 10 3.092e-05 3.49e-05 4.157e-05 0.00% Castro::expand_state() 10 2.119e-05 2.791e-05 3.698e-05 0.00% Castro::check_for_nan() 20 2.44e-05 2.88e-05 3.334e-05 0.00% Castro::post_timestep() 10 1.371e-05 1.665e-05 2.04e-05 0.00% Amr::InitializeInit() 1 2.697e-06 4.443e-06 1.37e-05 0.00% Castro::computeNewDt() 9 7.456e-06 8.214e-06 9.806e-06 0.00% Amr::init() 1 1.536e-06 2.763e-06 7.394e-06 0.00% Castro::computeInitialDt() 2 2.96e-06 3.466e-06 4.063e-06 0.00% Castro::post_init() 1 2.215e-06 2.948e-06 3.553e-06 0.00% Amr::initialInit() 1 1.212e-06 1.692e-06 3.258e-06 0.00% Other 261 0.01585 0.01808 0.01991 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.616 3.617 3.617 100.00% Amr::coarseTimeStep() 10 3.394 3.394 3.394 93.83% Amr::timeStep() 10 3.38 3.381 3.382 93.50% Castro::advance() 10 3.364 3.365 3.365 93.02% Castro::subcycle_advance_ctu() 10 3.29 3.294 3.308 91.44% Castro::do_advance_ctu() 10 3.29 3.294 3.308 91.44% Castro::construct_ctu_hydro_source() 10 2.504 2.517 2.524 69.77% Gravity::make_radial_gravity() 21 0.3272 0.3431 0.3544 9.80% AmrLevel::FillPatch() 41 0.1946 0.2121 0.2403 6.64% Castro::construct_old_gravity() 10 0.2037 0.2161 0.226 6.25% Gravity::get_old_grav_vector() 10 0.2026 0.2154 0.2254 6.23% Gravity::get_new_grav_vector() 11 0.2123 0.2133 0.2143 5.93% check_for_negative_density() 10 0.09987 0.155 0.2135 5.90% FillPatchIterator::Initialize 41 0.1675 0.1791 0.2116 5.85% Amr::init() 1 0.2107 0.2108 0.2109 5.83% Amr::initialInit() 1 0.1949 0.1956 0.1961 5.42% Castro::construct_new_gravity() 10 0.1875 0.1882 0.1889 5.22% Castro::initialize_do_advance() 10 0.1586 0.1692 0.1793 4.96% FillPatchIterator::FillFromLevel0() 41 0.1266 0.1375 0.1777 4.91% FillPatchSingleLevel 41 0.1265 0.1374 0.1776 4.91% Amr::InitializeInit() 1 0.07308 0.1123 0.1663 4.60% Amr::defBaseLevel() 1 0.07307 0.1123 0.1663 4.60% Castro::initData() 1 0.05525 0.0953 0.1487 4.11% FabArray::ParallelCopy() 41 0.09153 0.104 0.1431 3.96% Castro::expand_state() 10 0.1064 0.114 0.1268 3.51% Castro::clean_state() 62 0.1099 0.118 0.1265 3.50% Amr::FinalizeInit() 1 0.02976 0.08332 0.1222 3.38% Castro::estTimeStep() 21 0.02889 0.08489 0.1208 3.34% Castro::do_old_sources() 10 0.0986 0.1036 0.1147 3.17% FabArray::ParallelCopy_finish() 41 0.05086 0.06323 0.1067 2.95% Castro::computeInitialDt() 2 0.002646 0.05667 0.09587 2.65% amrex::Copy() 193 0.06698 0.07911 0.08661 2.39% Castro::computeTemp() 63 0.06153 0.06811 0.07372 2.04% Castro::initialize_advance() 10 0.05299 0.06756 0.07164 1.98% FabArray::setVal() 143 0.05251 0.06528 0.0714 1.97% Castro::do_new_sources() 10 0.05953 0.06321 0.06763 1.87% Castro::reset_internal_energy(MultiFab) 63 0.04342 0.0481 0.05233 1.45% Castro::reset_internal_energy(Fab) 1008 0.04314 0.0478 0.05203 1.44% Castro::normalize_species() 62 0.04143 0.04469 0.0503 1.39% FabArray::ParallelCopy_nowait() 41 0.03633 0.04065 0.04311 1.19% StateDataPhysBCFunct::() 41 0.03012 0.03338 0.03598 0.99% StateData::FillBoundary(geom) 41 0.03002 0.03327 0.03582 0.99% Castro::construct_new_source() 50 0.02924 0.03045 0.03228 0.89% Gravity::interpolate_monopole_grav() 21 0.02815 0.02957 0.03039 0.84% Castro::post_init() 1 0.02586 0.02621 0.02669 0.74% Castro::construct_new_gravity_source() 10 0.0225 0.02391 0.02545 0.70% Amr::writePlotFile() 2 0.0224 0.02288 0.02354 0.65% Castro::finalize_do_advance() 10 0.01433 0.01992 0.02299 0.64% Castro::post_timestep() 10 0.01489 0.01583 0.01715 0.47% Castro::check_for_nan() 20 0.009618 0.01094 0.01381 0.38% MultiFab::contains_nan() 20 0.009593 0.01091 0.01378 0.38% Castro::apply_source_to_state() 20 0.01048 0.01213 0.01368 0.38% FabArray::Saxpy() 20 0.01043 0.01208 0.01363 0.38% VisMF::Write(FabArray) 2 0.008836 0.009606 0.0124 0.34% FabArray::setDomainBndry() 41 0.007189 0.009663 0.01198 0.33% Castro::Castro() 1 0.009197 0.01099 0.01185 0.33% Castro::construct_old_source() 50 0.006428 0.008888 0.009879 0.27% Castro::construct_old_gravity_source() 10 0.006369 0.008816 0.009793 0.27% Castro::computeNewDt() 9 0.009228 0.009234 0.00924 0.26% Castro::initMFs() 1 0.00626 0.00692 0.007269 0.20% Other 261 0.02554 0.02913 0.03186 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-29-g3cb7f1555494) finalized