Initializing AMReX (24.07-30-gd9dec56e2201)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-30-gd9dec56e2201) initialized Starting run at 05:23:18 UTC on 2024-07-25. Successfully read inputs file ... Castro git describe: 24.07-18-g56f51f6c1 AMReX git describe: 24.07-30-gd9dec56e2 Microphysics git describe: 24.07-31-g4c8331df reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016311904 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363658164 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353743418 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.3279246 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327228044 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368821846 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.3146023 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309245993 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310257848 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310253963 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311076896 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007631516 seconds Ending run at 05:23:22 UTC on 2024-07-25. Run time = 3.506672269 Run time without initialization = 3.309786215 Average number of zones advanced per microsecond: 0.792 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.506 ... 3.506 ... 3.507 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2890 2.3359 2.3865 68.05% Gravity::make_radial_gravity() 21 0.297 0.3039 0.3142 8.96% check_for_negative_density() 10 0.03697 0.09099 0.139 3.97% Castro::initData() 1 0.06846 0.09277 0.1287 3.67% amrex::Copy() 193 0.07244 0.0806 0.09025 2.57% Castro::estTimeStep() 21 0.02973 0.0625 0.08524 2.43% FabArray::ParallelCopy_finish() 41 0.0363 0.05617 0.07801 2.22% FabArray::setVal() 143 0.06664 0.07114 0.07703 2.20% FabArray::ParallelCopy_nowait() 41 0.03634 0.04225 0.05127 1.46% Castro::reset_internal_energy(Fab) 1008 0.04411 0.04608 0.04688 1.34% Castro::normalize_species() 62 0.04148 0.04188 0.04279 1.22% FillPatchIterator::Initialize 41 0.02838 0.03344 0.03853 1.10% StateData::FillBoundary(geom) 41 0.03031 0.03207 0.0347 0.99% Gravity::interpolate_monopole_grav() 21 0.02779 0.02924 0.02994 0.85% Castro::initialize_do_advance() 10 0.01211 0.01708 0.02544 0.73% Castro::construct_new_gravity_source() 10 0.02233 0.02347 0.02505 0.71% Castro::computeTemp() 63 0.01749 0.01919 0.02011 0.57% FabArray::setDomainBndry() 41 0.007799 0.0116 0.01852 0.53% Castro::initialize_advance() 10 0.01066 0.01267 0.01485 0.42% MultiFab::contains_nan() 20 0.00959 0.0109 0.01372 0.39% VisMF::Write(FabArray) 2 0.009267 0.01004 0.01326 0.38% FabArray::Saxpy() 20 0.01141 0.0123 0.01299 0.37% Amr::writePlotFile() 2 0.008246 0.01164 0.01242 0.35% Castro::initMFs() 1 0.007123 0.008224 0.01048 0.30% Castro::construct_old_gravity_source() 10 0.00666 0.00911 0.009685 0.28% Castro::construct_new_source() 50 0.005971 0.006362 0.007109 0.20% main() 1 0.003492 0.003956 0.004559 0.13% Gravity::get_new_grav_vector() 11 0.002747 0.003455 0.003802 0.11% Amr::coarseTimeStep() 10 0.001481 0.001851 0.003009 0.09% Gravity::get_old_grav_vector() 10 0.001511 0.002015 0.002538 0.07% Castro::finalize_do_advance() 10 0.0003887 0.001064 0.001506 0.04% AmrLevel::FillPatch() 41 0.0006926 0.000951 0.001122 0.03% Amr::timeStep() 10 0.0001704 0.0002363 0.0004752 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002828 0.0002935 0.0003138 0.01% Castro::do_advance_ctu() 10 0.0001334 0.000163 0.0002072 0.01% Castro::clean_state() 62 0.0001446 0.0001598 0.0001811 0.01% StateDataPhysBCFunct::() 41 9.469e-05 0.0001215 0.0001683 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001098 0.0001284 0.000142 0.00% Castro::Castro() 1 6.299e-05 8.825e-05 0.0001107 0.00% FabArray::ParallelCopy() 41 7.688e-05 8.818e-05 0.0001097 0.00% Castro::do_old_sources() 10 7.634e-05 8.989e-05 9.606e-05 0.00% FillPatchSingleLevel 41 7.274e-05 8.489e-05 9.508e-05 0.00% Amr::FinalizeInit() 1 3.639e-06 1.637e-05 8.869e-05 0.00% Castro::construct_old_source() 50 6.805e-05 7.64e-05 8.561e-05 0.00% Castro::subcycle_advance_ctu() 10 4.27e-05 5.231e-05 7.219e-05 0.00% Castro::do_new_sources() 10 5.36e-05 6.039e-05 6.578e-05 0.00% Castro::apply_source_to_state() 20 3.988e-05 4.846e-05 5.948e-05 0.00% Castro::advance() 10 4.231e-05 4.512e-05 5.184e-05 0.00% Castro::construct_new_gravity() 10 2.986e-05 3.836e-05 4.796e-05 0.00% Castro::expand_state() 10 1.948e-05 2.731e-05 4.784e-05 0.00% Castro::construct_old_gravity() 10 3.402e-05 4.134e-05 4.74e-05 0.00% Amr::defBaseLevel() 1 3.227e-05 3.75e-05 4.294e-05 0.00% Castro::check_for_nan() 20 2.234e-05 2.819e-05 3.504e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.209e-05 1.539e-05 2.355e-05 0.00% Castro::post_timestep() 10 1.459e-05 1.674e-05 2.036e-05 0.00% Amr::initialInit() 1 1.461e-06 2.931e-06 9.918e-06 0.00% Castro::post_init() 1 2.69e-06 4.718e-06 9.842e-06 0.00% Castro::computeNewDt() 9 7.698e-06 8.505e-06 9.327e-06 0.00% Amr::InitializeInit() 1 3.034e-06 4.151e-06 8.211e-06 0.00% Amr::init() 1 1.986e-06 3.102e-06 6.897e-06 0.00% Castro::computeInitialDt() 2 3.553e-06 4.361e-06 6.041e-06 0.00% Other 260 0.01688 0.01942 0.02241 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.506 3.506 3.507 100.00% Amr::coarseTimeStep() 10 3.298 3.298 3.298 94.04% Amr::timeStep() 10 3.284 3.285 3.286 93.69% Castro::advance() 10 3.269 3.269 3.27 93.25% Castro::subcycle_advance_ctu() 10 3.189 3.192 3.195 91.10% Castro::do_advance_ctu() 10 3.189 3.192 3.194 91.09% Castro::construct_ctu_hydro_source() 10 2.444 2.447 2.449 69.83% Gravity::make_radial_gravity() 21 0.3127 0.3199 0.3287 9.37% AmrLevel::FillPatch() 41 0.2027 0.2102 0.2183 6.22% Gravity::get_new_grav_vector() 11 0.2091 0.21 0.2108 6.01% Castro::construct_old_gravity() 10 0.1908 0.1951 0.2032 5.80% Gravity::get_old_grav_vector() 10 0.1897 0.1942 0.2021 5.76% Amr::init() 1 0.1961 0.1964 0.1965 5.60% Castro::construct_new_gravity() 10 0.1835 0.1843 0.1854 5.29% FillPatchIterator::Initialize 41 0.1636 0.176 0.1834 5.23% Amr::initialInit() 1 0.1795 0.1797 0.1799 5.13% Castro::initialize_do_advance() 10 0.1684 0.1763 0.1796 5.12% Amr::InitializeInit() 1 0.09487 0.1157 0.1504 4.29% Amr::defBaseLevel() 1 0.09487 0.1157 0.1504 4.29% FillPatchIterator::FillFromLevel0() 41 0.1156 0.131 0.1459 4.16% FillPatchSingleLevel 41 0.1155 0.1309 0.1458 4.16% check_for_negative_density() 10 0.03697 0.09099 0.139 3.97% Castro::initData() 1 0.07193 0.09647 0.1323 3.77% Castro::expand_state() 10 0.1141 0.1229 0.1272 3.63% Castro::clean_state() 62 0.109 0.1127 0.1146 3.27% FabArray::ParallelCopy() 41 0.08064 0.09861 0.1146 3.27% Castro::do_old_sources() 10 0.09172 0.09478 0.09714 2.77% amrex::Copy() 193 0.07244 0.0806 0.09025 2.57% Castro::estTimeStep() 21 0.02973 0.0625 0.08524 2.43% Amr::FinalizeInit() 1 0.02937 0.06398 0.08463 2.41% FabArray::ParallelCopy_finish() 41 0.0363 0.05617 0.07801 2.22% FabArray::setVal() 143 0.06664 0.07114 0.07703 2.20% Castro::initialize_advance() 10 0.07174 0.07416 0.07692 2.19% Castro::computeTemp() 63 0.06192 0.06556 0.06686 1.91% Castro::do_new_sources() 10 0.0578 0.06198 0.06667 1.90% Castro::computeInitialDt() 2 0.002484 0.03712 0.05787 1.65% FabArray::ParallelCopy_nowait() 41 0.03645 0.04235 0.05137 1.46% Castro::reset_internal_energy(MultiFab) 63 0.04443 0.04637 0.04717 1.34% Castro::reset_internal_energy(Fab) 1008 0.04411 0.04608 0.04688 1.34% Castro::normalize_species() 62 0.04148 0.04188 0.04279 1.22% StateDataPhysBCFunct::() 41 0.03048 0.03219 0.03479 0.99% StateData::FillBoundary(geom) 41 0.03031 0.03207 0.0347 0.99% Castro::construct_new_source() 50 0.02856 0.02983 0.03201 0.91% Gravity::interpolate_monopole_grav() 21 0.02779 0.02924 0.02994 0.85% Castro::post_init() 1 0.02645 0.02666 0.02696 0.77% Castro::construct_new_gravity_source() 10 0.02233 0.02347 0.02505 0.71% Amr::writePlotFile() 2 0.02422 0.02452 0.02472 0.71% Castro::finalize_do_advance() 10 0.01246 0.01726 0.0205 0.58% FabArray::setDomainBndry() 41 0.007799 0.0116 0.01852 0.53% Castro::post_timestep() 10 0.01501 0.0155 0.01584 0.45% Castro::Castro() 1 0.01076 0.01229 0.01457 0.42% Castro::check_for_nan() 20 0.009613 0.01093 0.01376 0.39% MultiFab::contains_nan() 20 0.00959 0.0109 0.01372 0.39% VisMF::Write(FabArray) 2 0.009267 0.01004 0.01326 0.38% Castro::apply_source_to_state() 20 0.01147 0.01235 0.01304 0.37% FabArray::Saxpy() 20 0.01141 0.0123 0.01299 0.37% Castro::initMFs() 1 0.007123 0.008224 0.01048 0.30% Castro::construct_old_source() 50 0.006728 0.009186 0.009768 0.28% Castro::construct_old_gravity_source() 10 0.00666 0.00911 0.009685 0.28% Castro::computeNewDt() 9 0.00917 0.009187 0.009208 0.26% AmrLevel::AmrLevel(dm) 1 0.005907 0.006543 0.00811 0.23% Other 260 0.0215 0.02464 0.02832 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 41 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-30-gd9dec56e2201) finalized