Initializing AMReX (24.07-31-g11d31e5f787d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-31-g11d31e5f787d) initialized Starting run at 16:33:54 UTC on 2024-07-26. Successfully read inputs file ... Castro git describe: 24.07-34-g4c0b75d1a AMReX git describe: 24.07-31-g11d31e5f7 Microphysics git describe: 24.07-34-gecbc595e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014455591 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358195903 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.364448661 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.34573869 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.359988874 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.341659102 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.309922339 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.330145214 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.33456797 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.344097888 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.319391159 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008908175 seconds Ending run at 16:33:57 UTC on 2024-07-26. Run time = 3.633749619 Run time without initialization = 3.422007287 Average number of zones advanced per microsecond: 0.766 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.633 ... 3.634 ... 3.634 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2593 2.3459 2.3988 66.01% Gravity::make_radial_gravity() 21 0.3122 0.3202 0.3297 9.07% check_for_negative_density() 10 0.09657 0.1523 0.2383 6.56% Castro::initData() 1 0.04749 0.09035 0.1443 3.97% Castro::estTimeStep() 21 0.04433 0.09163 0.1403 3.86% amrex::Copy() 193 0.07035 0.07828 0.08855 2.44% FabArray::ParallelCopy_finish() 41 0.05307 0.06857 0.08385 2.31% FabArray::setVal() 143 0.06189 0.06992 0.0793 2.18% Castro::reset_internal_energy(Fab) 1008 0.0452 0.04715 0.05074 1.40% Castro::normalize_species() 62 0.0422 0.04351 0.0451 1.24% FabArray::ParallelCopy_nowait() 41 0.03572 0.04051 0.04288 1.18% StateData::FillBoundary(geom) 41 0.03202 0.03426 0.03719 1.02% FillPatchIterator::Initialize 41 0.02871 0.03324 0.03602 0.99% Gravity::interpolate_monopole_grav() 21 0.02762 0.03019 0.03198 0.88% Castro::construct_new_gravity_source() 10 0.02231 0.02525 0.02845 0.78% Castro::computeTemp() 63 0.01838 0.01991 0.02109 0.58% Castro::initialize_do_advance() 10 0.01378 0.01774 0.02079 0.57% FabArray::Saxpy() 20 0.01054 0.01228 0.01359 0.37% VisMF::Write(FabArray) 2 0.008836 0.009744 0.01301 0.36% Castro::initialize_advance() 10 0.006072 0.009937 0.0127 0.35% Amr::writePlotFile() 2 0.007758 0.01085 0.01252 0.34% MultiFab::contains_nan() 20 0.009862 0.01083 0.01205 0.33% FabArray::setDomainBndry() 41 0.007971 0.009759 0.01043 0.29% Castro::construct_old_gravity_source() 10 0.007373 0.008787 0.009323 0.26% Castro::initMFs() 1 0.006964 0.007615 0.008037 0.22% Amr::coarseTimeStep() 10 0.002096 0.006353 0.007443 0.20% Castro::construct_new_source() 50 0.005821 0.006011 0.006234 0.17% main() 1 0.00389 0.004111 0.004223 0.12% Gravity::get_new_grav_vector() 11 0.003172 0.003543 0.003914 0.11% Gravity::get_old_grav_vector() 10 0.001659 0.002084 0.002545 0.07% AmrLevel::FillPatch() 41 0.0006538 0.0009914 0.001223 0.03% Castro::finalize_do_advance() 10 0.0004532 0.0008879 0.001068 0.03% Amr::timeStep() 10 0.0001548 0.0002368 0.0005059 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002807 0.0002959 0.0003339 0.01% Castro::clean_state() 62 0.0001373 0.0001531 0.0001801 0.00% Castro::do_advance_ctu() 10 0.0001389 0.000159 0.0001731 0.00% Castro::Castro() 1 7.692e-05 0.0001031 0.00015 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001012 0.0001112 0.0001288 0.00% StateDataPhysBCFunct::() 41 9.744e-05 0.0001084 0.0001264 0.00% Castro::do_old_sources() 10 7.55e-05 9.555e-05 0.0001106 0.00% FabArray::ParallelCopy() 41 8.155e-05 8.946e-05 0.0001061 0.00% Amr::FinalizeInit() 1 4.121e-06 1.81e-05 0.0001047 0.00% FillPatchSingleLevel 41 7.643e-05 8.537e-05 9.719e-05 0.00% Castro::construct_old_source() 50 6.49e-05 7.542e-05 9.075e-05 0.00% Castro::advance() 10 3.699e-05 4.667e-05 6.706e-05 0.00% Castro::do_new_sources() 10 5.611e-05 6.08e-05 6.378e-05 0.00% Amr::defBaseLevel() 1 3.236e-05 5.255e-05 6.113e-05 0.00% Castro::subcycle_advance_ctu() 10 4.351e-05 4.926e-05 5.943e-05 0.00% Castro::apply_source_to_state() 20 4.004e-05 4.574e-05 5.713e-05 0.00% Castro::construct_new_gravity() 10 3.263e-05 3.911e-05 4.751e-05 0.00% Castro::construct_old_gravity() 10 3.563e-05 3.923e-05 4.433e-05 0.00% Castro::check_for_nan() 20 2.438e-05 2.644e-05 3.173e-05 0.00% Castro::expand_state() 10 2.066e-05 2.483e-05 2.957e-05 0.00% Castro::post_timestep() 10 1.649e-05 2.068e-05 2.686e-05 0.00% Castro::computeNewDt() 9 7.74e-06 8.471e-06 9.892e-06 0.00% Castro::post_init() 1 2.243e-06 5.177e-06 9.602e-06 0.00% Amr::InitializeInit() 1 3.062e-06 3.794e-06 6.011e-06 0.00% Castro::computeInitialDt() 2 3.441e-06 3.925e-06 4.417e-06 0.00% Amr::init() 1 1.798e-06 2.164e-06 2.762e-06 0.00% Amr::initialInit() 1 1.478e-06 1.971e-06 2.45e-06 0.00% Other 261 0.01722 0.01904 0.02042 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.633 3.634 3.634 100.00% Amr::coarseTimeStep() 10 3.409 3.409 3.409 93.81% Amr::timeStep() 10 3.391 3.392 3.397 93.47% Castro::advance() 10 3.375 3.376 3.377 92.93% Castro::subcycle_advance_ctu() 10 3.295 3.302 3.308 91.05% Castro::do_advance_ctu() 10 3.295 3.302 3.308 91.04% Castro::construct_ctu_hydro_source() 10 2.515 2.519 2.524 69.46% Gravity::make_radial_gravity() 21 0.3287 0.3367 0.3425 9.43% check_for_negative_density() 10 0.09657 0.1523 0.2383 6.56% AmrLevel::FillPatch() 41 0.1993 0.2182 0.2327 6.40% Gravity::get_new_grav_vector() 11 0.2249 0.2268 0.2282 6.28% Amr::init() 1 0.2111 0.2113 0.2113 5.82% Castro::construct_old_gravity() 10 0.196 0.2018 0.2095 5.77% Gravity::get_old_grav_vector() 10 0.1952 0.2009 0.2084 5.74% Castro::construct_new_gravity() 10 0.2005 0.2021 0.2032 5.59% FillPatchIterator::Initialize 41 0.1711 0.1868 0.1978 5.44% Amr::initialInit() 1 0.1965 0.1968 0.197 5.42% Castro::initialize_do_advance() 10 0.1641 0.1732 0.1816 5.00% Amr::InitializeInit() 1 0.06906 0.1134 0.1682 4.63% Amr::defBaseLevel() 1 0.06906 0.1134 0.1682 4.63% FillPatchIterator::FillFromLevel0() 41 0.1274 0.1438 0.1572 4.33% FillPatchSingleLevel 41 0.1273 0.1437 0.1571 4.32% Castro::initData() 1 0.05151 0.09432 0.1488 4.09% Castro::estTimeStep() 21 0.04433 0.09163 0.1403 3.86% Castro::expand_state() 10 0.1083 0.1192 0.128 3.52% Amr::FinalizeInit() 1 0.02836 0.08344 0.1278 3.52% Castro::clean_state() 62 0.1128 0.1161 0.1213 3.34% FabArray::ParallelCopy() 41 0.09402 0.1093 0.1198 3.30% Castro::do_old_sources() 10 0.09336 0.09859 0.1017 2.80% Castro::computeInitialDt() 2 0.002479 0.05722 0.1016 2.80% amrex::Copy() 193 0.07035 0.07828 0.08855 2.44% FabArray::ParallelCopy_finish() 41 0.05307 0.06857 0.08385 2.31% FabArray::setVal() 143 0.06189 0.06992 0.0793 2.18% Castro::initialize_advance() 10 0.06343 0.0698 0.07661 2.11% Castro::do_new_sources() 10 0.05747 0.06595 0.07491 2.06% Castro::computeTemp() 63 0.06387 0.06735 0.07217 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04549 0.04745 0.05108 1.41% Castro::reset_internal_energy(Fab) 1008 0.0452 0.04715 0.05074 1.40% Castro::normalize_species() 62 0.0422 0.04351 0.0451 1.24% FabArray::ParallelCopy_nowait() 41 0.03582 0.0406 0.04296 1.18% StateDataPhysBCFunct::() 41 0.03213 0.03437 0.03729 1.03% StateData::FillBoundary(geom) 41 0.03202 0.03426 0.03719 1.02% Castro::construct_new_source() 50 0.0282 0.03126 0.03462 0.95% Castro::finalize_do_advance() 10 0.01657 0.02609 0.03309 0.91% Gravity::interpolate_monopole_grav() 21 0.02762 0.03019 0.03198 0.88% Castro::construct_new_gravity_source() 10 0.02231 0.02525 0.02845 0.78% Castro::post_init() 1 0.0251 0.02562 0.02586 0.71% Amr::writePlotFile() 2 0.02331 0.02345 0.02376 0.65% Castro::post_timestep() 10 0.01501 0.01618 0.01938 0.53% Castro::apply_source_to_state() 20 0.01058 0.01232 0.01363 0.38% FabArray::Saxpy() 20 0.01054 0.01228 0.01359 0.37% VisMF::Write(FabArray) 2 0.008836 0.009744 0.01301 0.36% Castro::Castro() 1 0.01094 0.01235 0.0129 0.35% Castro::check_for_nan() 20 0.00989 0.01085 0.01208 0.33% MultiFab::contains_nan() 20 0.009862 0.01083 0.01205 0.33% FabArray::setDomainBndry() 41 0.007971 0.009759 0.01043 0.29% Castro::construct_old_source() 50 0.007438 0.008862 0.009392 0.26% Castro::construct_old_gravity_source() 10 0.007373 0.008787 0.009323 0.26% Castro::computeNewDt() 9 0.009204 0.009219 0.009224 0.25% Castro::initMFs() 1 0.006964 0.007615 0.008037 0.22% Other 261 0.02841 0.03126 0.03435 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 38 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-31-g11d31e5f787d) finalized