Initializing AMReX (24.07-33-g80b0c7ea3dbc)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-33-g80b0c7ea3dbc) initialized Starting run at 19:34:36 UTC on 2024-07-26. Successfully read inputs file ... Castro git describe: 24.07-27-g48044aec5 AMReX git describe: 24.07-33-g80b0c7ea3 Microphysics git describe: 24.07-34-gecbc595e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014562021 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357870793 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.356324052 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335078863 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336137862 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.380826665 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.31531381 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309444415 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311027856 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309070228 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309456579 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007502258 seconds Ending run at 19:34:39 UTC on 2024-07-26. Run time = 3.527670253 Run time without initialization = 3.33295807 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.527 ... 3.528 ... 3.528 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2659 2.3214 2.3934 67.85% Gravity::make_radial_gravity() 21 0.294 0.3045 0.3115 8.83% check_for_negative_density() 10 0.03239 0.1091 0.1659 4.70% Castro::initData() 1 0.04711 0.08718 0.1285 3.64% Castro::estTimeStep() 21 0.02307 0.06857 0.1106 3.14% amrex::Copy() 193 0.07668 0.08188 0.09057 2.57% FabArray::setVal() 143 0.06331 0.07672 0.08891 2.52% FabArray::ParallelCopy_finish() 41 0.04362 0.06268 0.07336 2.08% Castro::reset_internal_energy(Fab) 1008 0.0436 0.04632 0.04858 1.38% FabArray::ParallelCopy_nowait() 41 0.03962 0.04372 0.0484 1.37% Castro::normalize_species() 62 0.04074 0.04166 0.04246 1.20% FillPatchIterator::Initialize 41 0.02892 0.03462 0.03899 1.11% StateData::FillBoundary(geom) 41 0.03091 0.03362 0.03691 1.05% Gravity::interpolate_monopole_grav() 21 0.02743 0.0289 0.02983 0.85% Castro::construct_new_gravity_source() 10 0.02266 0.02387 0.02476 0.70% Castro::initialize_do_advance() 10 0.01602 0.01926 0.02302 0.65% Castro::computeTemp() 63 0.01797 0.01942 0.02025 0.57% Castro::initialize_advance() 10 0.01033 0.01255 0.01505 0.43% FabArray::Saxpy() 20 0.0117 0.01283 0.01416 0.40% MultiFab::contains_nan() 20 0.01008 0.01108 0.01213 0.34% VisMF::Write(FabArray) 2 0.009085 0.009644 0.0121 0.34% FabArray::setDomainBndry() 41 0.007751 0.01005 0.01086 0.31% Amr::writePlotFile() 2 0.00727 0.009835 0.01052 0.30% Castro::construct_old_gravity_source() 10 0.008966 0.00961 0.01007 0.29% Castro::enforce_min_density() 62 0.007167 0.007367 0.007651 0.22% Castro::construct_new_source() 50 0.006139 0.006358 0.006585 0.19% main() 1 0.003788 0.004011 0.004199 0.12% Gravity::get_new_grav_vector() 11 0.003178 0.003431 0.003804 0.11% Amr::coarseTimeStep() 10 0.001096 0.001916 0.002939 0.08% Gravity::get_old_grav_vector() 10 0.001585 0.001969 0.00229 0.06% Castro::finalize_do_advance() 10 0.001011 0.001123 0.001434 0.04% AmrLevel::FillPatch() 41 0.0008318 0.0009272 0.001153 0.03% Amr::timeStep() 10 0.000179 0.0002268 0.0003853 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000272 0.0002894 0.0003076 0.01% Castro::do_advance_ctu() 10 0.0001426 0.0001563 0.0001803 0.01% Castro::clean_state() 62 0.0001524 0.0001633 0.0001787 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001028 0.0001169 0.0001272 0.00% StateDataPhysBCFunct::() 41 9.851e-05 0.0001112 0.00012 0.00% Castro::do_old_sources() 10 7.745e-05 9.142e-05 0.000106 0.00% Castro::Castro() 1 5.792e-05 7.474e-05 9.779e-05 0.00% Amr::FinalizeInit() 1 3.406e-06 1.522e-05 9.168e-05 0.00% FillPatchSingleLevel 41 7.465e-05 7.893e-05 8.978e-05 0.00% FabArray::ParallelCopy() 41 6.919e-05 7.944e-05 8.731e-05 0.00% Castro::subcycle_advance_ctu() 10 4.252e-05 6.674e-05 8.405e-05 0.00% Castro::construct_old_source() 50 6.321e-05 7.46e-05 8.267e-05 0.00% Castro::advance() 10 3.922e-05 5.31e-05 6.417e-05 0.00% Castro::do_new_sources() 10 5.298e-05 5.837e-05 6.203e-05 0.00% Castro::apply_source_to_state() 20 4.337e-05 4.966e-05 5.58e-05 0.00% Castro::construct_old_gravity() 10 3.882e-05 4.208e-05 4.606e-05 0.00% Castro::construct_new_gravity() 10 3.342e-05 3.772e-05 4.378e-05 0.00% Amr::defBaseLevel() 1 3.215e-05 3.469e-05 4.107e-05 0.00% Castro::check_for_nan() 20 1.988e-05 2.413e-05 3.171e-05 0.00% Castro::expand_state() 10 1.979e-05 2.202e-05 2.615e-05 0.00% Castro::post_timestep() 10 1.433e-05 1.71e-05 2.185e-05 0.00% Castro::post_init() 1 8.737e-06 9.972e-06 1.133e-05 0.00% Castro::computeNewDt() 9 7.72e-06 8.316e-06 9.015e-06 0.00% Amr::InitializeInit() 1 2.91e-06 3.598e-06 6.802e-06 0.00% Castro::computeInitialDt() 2 2.799e-06 3.533e-06 4.478e-06 0.00% Amr::init() 1 1.976e-06 2.526e-06 3.49e-06 0.00% Amr::initialInit() 1 1.277e-06 1.972e-06 2.813e-06 0.00% Other 200 0.01646 0.01945 0.02093 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.527 3.528 3.528 100.00% Amr::coarseTimeStep() 10 3.321 3.321 3.321 94.15% Amr::timeStep() 10 3.308 3.309 3.31 93.84% Castro::advance() 10 3.293 3.294 3.294 93.37% Castro::subcycle_advance_ctu() 10 3.203 3.212 3.221 91.30% Castro::do_advance_ctu() 10 3.203 3.212 3.221 91.29% Castro::construct_ctu_hydro_source() 10 2.447 2.451 2.455 69.59% Gravity::make_radial_gravity() 21 0.3106 0.321 0.3274 9.28% AmrLevel::FillPatch() 41 0.1971 0.2177 0.2308 6.54% Gravity::get_new_grav_vector() 11 0.2099 0.2113 0.2126 6.03% Castro::construct_old_gravity() 10 0.188 0.196 0.2026 5.74% Gravity::get_old_grav_vector() 10 0.1869 0.1951 0.2014 5.71% FillPatchIterator::Initialize 41 0.1685 0.1852 0.1983 5.62% Amr::init() 1 0.1941 0.1943 0.1943 5.51% Castro::initialize_do_advance() 10 0.1657 0.181 0.1888 5.35% Castro::construct_new_gravity() 10 0.1844 0.1856 0.1863 5.28% Amr::initialInit() 1 0.1794 0.1794 0.1795 5.09% check_for_negative_density() 10 0.03239 0.1091 0.1659 4.70% FillPatchIterator::FillFromLevel0() 41 0.1264 0.1405 0.154 4.37% FillPatchSingleLevel 41 0.1263 0.1404 0.1539 4.36% Amr::InitializeInit() 1 0.06854 0.1079 0.15 4.25% Amr::defBaseLevel() 1 0.06853 0.1079 0.15 4.25% Castro::expand_state() 10 0.107 0.1246 0.1361 3.86% Castro::initData() 1 0.05092 0.09086 0.1322 3.75% FabArray::ParallelCopy() 41 0.08926 0.1066 0.1216 3.45% Castro::clean_state() 62 0.1093 0.1144 0.118 3.34% Amr::FinalizeInit() 1 0.02947 0.07159 0.1109 3.14% Castro::estTimeStep() 21 0.02307 0.06857 0.1106 3.14% Castro::do_old_sources() 10 0.09313 0.1011 0.1045 2.96% amrex::Copy() 193 0.07668 0.08188 0.09057 2.57% FabArray::setVal() 143 0.06331 0.07672 0.08891 2.52% Castro::initialize_advance() 10 0.0697 0.07832 0.08707 2.47% Castro::computeInitialDt() 2 0.00222 0.0443 0.08365 2.37% FabArray::ParallelCopy_finish() 41 0.04362 0.06268 0.07336 2.08% Castro::computeTemp() 63 0.06186 0.06603 0.06913 1.96% Castro::do_new_sources() 10 0.06017 0.06359 0.06701 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04387 0.04661 0.04889 1.39% Castro::reset_internal_energy(Fab) 1008 0.0436 0.04632 0.04858 1.38% FabArray::ParallelCopy_nowait() 41 0.03972 0.04382 0.0485 1.37% Castro::normalize_species() 62 0.04074 0.04166 0.04246 1.20% StateDataPhysBCFunct::() 41 0.03102 0.03373 0.03703 1.05% StateData::FillBoundary(geom) 41 0.03091 0.03362 0.03691 1.05% Castro::construct_new_source() 50 0.02896 0.03023 0.03128 0.89% Gravity::interpolate_monopole_grav() 21 0.02743 0.0289 0.02983 0.85% Castro::post_init() 1 0.02651 0.02682 0.02698 0.76% Castro::construct_new_gravity_source() 10 0.02266 0.02387 0.02476 0.70% Amr::writePlotFile() 2 0.02232 0.02243 0.02255 0.64% Castro::finalize_do_advance() 10 0.01223 0.01656 0.0207 0.59% Castro::post_timestep() 10 0.0148 0.01556 0.01616 0.46% Castro::apply_source_to_state() 20 0.01175 0.01288 0.01422 0.40% FabArray::Saxpy() 20 0.0117 0.01283 0.01416 0.40% Castro::check_for_nan() 20 0.01011 0.01111 0.01216 0.34% MultiFab::contains_nan() 20 0.01008 0.01108 0.01213 0.34% VisMF::Write(FabArray) 2 0.009085 0.009644 0.0121 0.34% Castro::Castro() 1 0.009173 0.01091 0.01156 0.33% FabArray::setDomainBndry() 41 0.007751 0.01005 0.01086 0.31% Castro::construct_old_source() 50 0.009029 0.009685 0.01015 0.29% Castro::construct_old_gravity_source() 10 0.008966 0.00961 0.01007 0.29% Castro::computeNewDt() 9 0.008822 0.00884 0.008855 0.25% Castro::enforce_min_density() 62 0.007167 0.007367 0.007651 0.22% Other 200 0.02616 0.03029 0.03283 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-33-g80b0c7ea3dbc) finalized