Initializing AMReX (24.07-31-g11d31e5f787d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-31-g11d31e5f787d) initialized Starting run at 05:25:20 UTC on 2024-07-26. Successfully read inputs file ... Castro git describe: 24.07-23-g8ffd8d763 AMReX git describe: 24.07-31-g11d31e5f7 Microphysics git describe: 24.07-33-g997a4262 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015202661 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.346774836 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355227052 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.352442966 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.361576732 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36976448 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.311436155 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314285191 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310645484 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309563085 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310175279 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007942188 seconds Ending run at 05:25:23 UTC on 2024-07-26. Run time = 3.561468151 Run time without initialization = 3.354712231 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.561 ... 3.561 ... 3.562 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2923 2.3328 2.3857 66.98% Gravity::make_radial_gravity() 21 0.2968 0.303 0.3175 8.91% check_for_negative_density() 10 0.06777 0.1213 0.1649 4.63% Castro::initData() 1 0.04717 0.0874 0.1406 3.95% Castro::estTimeStep() 21 0.04995 0.09784 0.1253 3.52% FabArray::ParallelCopy_finish() 41 0.04493 0.06597 0.09773 2.74% amrex::Copy() 193 0.06991 0.07916 0.08714 2.45% FabArray::setVal() 143 0.05456 0.06842 0.0855 2.40% Castro::reset_internal_energy(Fab) 1008 0.04495 0.04677 0.04765 1.34% Castro::normalize_species() 62 0.04143 0.04342 0.04716 1.32% FabArray::ParallelCopy_nowait() 41 0.03369 0.03947 0.04103 1.15% FillPatchIterator::Initialize 41 0.02704 0.0337 0.03817 1.07% StateData::FillBoundary(geom) 41 0.02991 0.03264 0.03558 1.00% Gravity::interpolate_monopole_grav() 21 0.02851 0.02935 0.03027 0.85% Castro::construct_new_gravity_source() 10 0.02079 0.02455 0.02958 0.83% Castro::initialize_do_advance() 10 0.01165 0.01761 0.02102 0.59% Castro::computeTemp() 63 0.01836 0.01947 0.02 0.56% FabArray::Saxpy() 20 0.01013 0.01208 0.01333 0.37% Amr::writePlotFile() 2 0.008109 0.01086 0.01328 0.37% Castro::initialize_advance() 10 0.005391 0.009688 0.01271 0.36% FabArray::setDomainBndry() 41 0.006806 0.01046 0.01267 0.36% VisMF::Write(FabArray) 2 0.00846 0.009848 0.01263 0.35% MultiFab::contains_nan() 20 0.009417 0.01002 0.01054 0.30% Castro::construct_old_gravity_source() 10 0.006564 0.008655 0.009295 0.26% Castro::initMFs() 1 0.006472 0.007032 0.007939 0.22% Amr::coarseTimeStep() 10 0.001398 0.002664 0.006819 0.19% Castro::construct_new_source() 50 0.005409 0.005948 0.006211 0.17% main() 1 0.003695 0.004027 0.004169 0.12% Gravity::get_new_grav_vector() 11 0.002918 0.003549 0.003971 0.11% Gravity::get_old_grav_vector() 10 0.001523 0.002045 0.002351 0.07% AmrLevel::FillPatch() 41 0.0006388 0.0008981 0.001104 0.03% Castro::finalize_do_advance() 10 0.0004076 0.001001 0.001098 0.03% Amr::timeStep() 10 0.0001656 0.00021 0.0003886 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002822 0.000291 0.0003031 0.01% Castro::clean_state() 62 0.0001308 0.0001493 0.0001702 0.00% Castro::do_advance_ctu() 10 0.0001414 0.0001497 0.0001616 0.00% StateDataPhysBCFunct::() 41 9.79e-05 0.0001115 0.0001561 0.00% FillPatchIterator::FillFromLevel0() 41 9.883e-05 0.0001134 0.0001277 0.00% Castro::Castro() 1 5.861e-05 8.037e-05 0.0001174 0.00% Amr::FinalizeInit() 1 3.715e-06 1.715e-05 9.725e-05 0.00% Castro::do_old_sources() 10 7.486e-05 8.358e-05 9.704e-05 0.00% Castro::construct_old_source() 50 5.796e-05 7.105e-05 9.112e-05 0.00% FillPatchSingleLevel 41 7.085e-05 8.121e-05 9.055e-05 0.00% FabArray::ParallelCopy() 41 6.626e-05 7.921e-05 8.778e-05 0.00% Castro::do_new_sources() 10 5.123e-05 5.973e-05 7.767e-05 0.00% Castro::subcycle_advance_ctu() 10 4.178e-05 4.801e-05 5.956e-05 0.00% Castro::apply_source_to_state() 20 4.004e-05 4.524e-05 5.261e-05 0.00% Castro::advance() 10 3.901e-05 4.144e-05 4.828e-05 0.00% Castro::construct_new_gravity() 10 3.018e-05 3.638e-05 4.444e-05 0.00% Castro::construct_old_gravity() 10 3.372e-05 3.759e-05 4.045e-05 0.00% Amr::defBaseLevel() 1 3.079e-05 3.405e-05 3.934e-05 0.00% Castro::check_for_nan() 20 2.22e-05 2.438e-05 2.753e-05 0.00% Castro::post_timestep() 10 1.514e-05 1.825e-05 2.238e-05 0.00% Castro::expand_state() 10 1.938e-05 2.087e-05 2.159e-05 0.00% Castro::computeNewDt() 9 7.327e-06 1.258e-05 2.102e-05 0.00% Amr::InitializeInit() 1 2.493e-06 4.209e-06 1.062e-05 0.00% Castro::post_init() 1 2.792e-06 3.432e-06 4.957e-06 0.00% Castro::computeInitialDt() 2 3.237e-06 3.774e-06 4.442e-06 0.00% Amr::initialInit() 1 1.437e-06 1.859e-06 2.727e-06 0.00% Amr::init() 1 2.006e-06 2.222e-06 2.536e-06 0.00% Other 261 0.01563 0.01791 0.01951 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.561 3.561 3.561 100.00% Amr::coarseTimeStep() 10 3.343 3.343 3.343 93.86% Amr::timeStep() 10 3.325 3.326 3.327 93.41% Castro::advance() 10 3.309 3.31 3.311 92.98% Castro::subcycle_advance_ctu() 10 3.23 3.239 3.254 91.37% Castro::do_advance_ctu() 10 3.23 3.239 3.254 91.37% Castro::construct_ctu_hydro_source() 10 2.471 2.474 2.478 69.57% Gravity::make_radial_gravity() 21 0.3135 0.3198 0.3314 9.30% Gravity::get_new_grav_vector() 11 0.2172 0.2196 0.2301 6.46% AmrLevel::FillPatch() 41 0.1963 0.2149 0.2238 6.28% Amr::init() 1 0.2061 0.2063 0.2064 5.79% Castro::construct_new_gravity() 10 0.1922 0.1946 0.2052 5.76% Castro::construct_old_gravity() 10 0.1846 0.1892 0.1989 5.59% Gravity::get_old_grav_vector() 10 0.1834 0.1883 0.1983 5.57% FillPatchIterator::Initialize 41 0.1684 0.1827 0.1956 5.49% Amr::initialInit() 1 0.1906 0.191 0.1912 5.37% Castro::initialize_do_advance() 10 0.1617 0.174 0.1797 5.05% check_for_negative_density() 10 0.06777 0.1213 0.1649 4.63% Amr::InitializeInit() 1 0.06808 0.1081 0.1624 4.56% Amr::defBaseLevel() 1 0.06808 0.1081 0.1624 4.56% FillPatchIterator::FillFromLevel0() 41 0.12 0.1385 0.1618 4.54% FillPatchSingleLevel 41 0.1199 0.1384 0.1617 4.54% Castro::initData() 1 0.05066 0.09114 0.1442 4.05% Castro::expand_state() 10 0.106 0.1207 0.1326 3.72% FabArray::ParallelCopy() 41 0.08589 0.1056 0.1316 3.69% Castro::estTimeStep() 21 0.04995 0.09784 0.1253 3.52% Amr::FinalizeInit() 1 0.02873 0.08289 0.1231 3.46% Castro::clean_state() 62 0.1101 0.115 0.1199 3.37% FabArray::ParallelCopy_finish() 41 0.04493 0.06597 0.09773 2.74% Castro::do_old_sources() 10 0.09128 0.09468 0.09708 2.73% Castro::computeInitialDt() 2 0.00226 0.0565 0.0966 2.71% amrex::Copy() 193 0.06991 0.07916 0.08714 2.45% FabArray::setVal() 143 0.05456 0.06842 0.0855 2.40% Castro::do_new_sources() 10 0.05471 0.0669 0.0829 2.33% Castro::initialize_advance() 10 0.05176 0.06777 0.0769 2.16% Castro::computeTemp() 63 0.0636 0.06653 0.0675 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04524 0.04706 0.04794 1.35% Castro::reset_internal_energy(Fab) 1008 0.04495 0.04677 0.04765 1.34% Castro::normalize_species() 62 0.04143 0.04342 0.04716 1.32% Castro::finalize_do_advance() 10 0.01146 0.02945 0.04186 1.18% FabArray::ParallelCopy_nowait() 41 0.03377 0.03956 0.04111 1.15% Castro::construct_new_source() 50 0.0262 0.0305 0.0358 1.01% StateDataPhysBCFunct::() 41 0.03001 0.03275 0.03574 1.00% StateData::FillBoundary(geom) 41 0.02991 0.03264 0.03558 1.00% Gravity::interpolate_monopole_grav() 21 0.02851 0.02935 0.03027 0.85% Castro::construct_new_gravity_source() 10 0.02079 0.02455 0.02958 0.83% Castro::post_init() 1 0.02549 0.02594 0.02611 0.73% Amr::writePlotFile() 2 0.02321 0.02336 0.02382 0.67% Castro::post_timestep() 10 0.01502 0.01546 0.01601 0.45% Castro::apply_source_to_state() 20 0.01017 0.01213 0.01338 0.38% Castro::computeNewDt() 9 0.009829 0.01291 0.01336 0.38% FabArray::Saxpy() 20 0.01013 0.01208 0.01333 0.37% FabArray::setDomainBndry() 41 0.006806 0.01046 0.01267 0.36% VisMF::Write(FabArray) 2 0.00846 0.009848 0.01263 0.35% Castro::Castro() 1 0.009983 0.01086 0.01185 0.33% Castro::check_for_nan() 20 0.009441 0.01004 0.01057 0.30% MultiFab::contains_nan() 20 0.009417 0.01002 0.01054 0.30% Castro::construct_old_source() 50 0.006622 0.008726 0.009382 0.26% Castro::construct_old_gravity_source() 10 0.006564 0.008655 0.009295 0.26% Castro::initMFs() 1 0.006472 0.007032 0.007939 0.22% Other 261 0.02541 0.02926 0.03235 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 38 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-31-g11d31e5f787d) finalized