Initializing AMReX (24.07-34-g6975ae0ed5ca)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-34-g6975ae0ed5ca) initialized Starting run at 18:31:04 UTC on 2024-07-27. Successfully read inputs file ... Castro git describe: 24.07-40-g8828c4bf1 AMReX git describe: 24.07-34-g6975ae0ed Microphysics git describe: 24.07-36-gc75486b6 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014372925 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36163373 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35869476 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.345200378 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.350701232 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.397628499 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.324307454 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.32261497 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.324239636 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.351360917 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.323105407 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 1.106762802 seconds Ending run at 18:31:09 UTC on 2024-07-27. Run time = 4.760743502 Run time without initialization = 4.571448032 Average number of zones advanced per microsecond: 0.573 Average number of zones advanced per microsecond per rank: 0.072 TinyProfiler total time across processes [min...avg...max]: 4.76 ... 4.76 ... 4.761 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3238 2.3692 2.4322 51.09% VisMF::Write(FabArray) 2 0.009129 0.8331 1.11 23.32% Amr::writePlotFile() 2 0.007767 0.2849 1.109 23.30% Gravity::make_radial_gravity() 21 0.3032 0.3145 0.322 6.76% check_for_negative_density() 10 0.0918 0.1593 0.2104 4.42% Castro::initData() 1 0.04855 0.08731 0.126 2.65% Castro::estTimeStep() 21 0.03557 0.07445 0.1191 2.50% FabArray::ParallelCopy_finish() 41 0.05671 0.07147 0.1017 2.14% amrex::Copy() 193 0.07627 0.08478 0.0936 1.97% FabArray::setVal() 143 0.06414 0.07235 0.08048 1.69% Castro::normalize_species() 62 0.04166 0.04716 0.05345 1.12% Castro::reset_internal_energy(Fab) 1008 0.04717 0.04862 0.05103 1.07% FabArray::ParallelCopy_nowait() 41 0.03836 0.04269 0.04579 0.96% FillPatchIterator::Initialize 41 0.02661 0.03557 0.03907 0.82% StateData::FillBoundary(geom) 41 0.03156 0.03344 0.03558 0.75% Gravity::interpolate_monopole_grav() 21 0.02737 0.02934 0.03055 0.64% Castro::construct_new_gravity_source() 10 0.02332 0.0243 0.02552 0.54% Castro::computeTemp() 63 0.01865 0.02071 0.02211 0.46% Castro::initialize_do_advance() 10 0.01291 0.0182 0.02077 0.44% FabArray::Saxpy() 20 0.0115 0.01313 0.01454 0.31% MultiFab::contains_nan() 20 0.009946 0.01159 0.01372 0.29% Castro::initialize_advance() 10 0.01153 0.0121 0.01282 0.27% FabArray::setDomainBndry() 41 0.00708 0.01024 0.01213 0.25% Castro::construct_old_gravity_source() 10 0.007705 0.009598 0.01099 0.23% Amr::coarseTimeStep() 10 0.001963 0.004937 0.00792 0.17% Castro::construct_new_source() 50 0.006328 0.006947 0.007345 0.15% main() 1 0.003133 0.00409 0.004421 0.09% Gravity::get_new_grav_vector() 11 0.002911 0.003474 0.004238 0.09% Gravity::get_old_grav_vector() 10 0.00163 0.002235 0.002649 0.06% AmrLevel::FillPatch() 41 0.0006716 0.0008697 0.001449 0.03% Castro::finalize_do_advance() 10 0.001173 0.001193 0.001228 0.03% Amr::timeStep() 10 0.0001769 0.0002515 0.0004858 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002857 0.0003085 0.0003314 0.01% Castro::clean_state() 62 0.0001474 0.0001701 0.0001912 0.00% Castro::do_advance_ctu() 10 0.0001366 0.0001564 0.0001897 0.00% StateDataPhysBCFunct::() 41 9.458e-05 0.0001213 0.0001654 0.00% FillPatchIterator::FillFromLevel0() 41 0.000117 0.0001317 0.0001474 0.00% Amr::FinalizeInit() 1 3.718e-06 2.09e-05 0.0001365 0.00% Castro::do_old_sources() 10 8.284e-05 9.816e-05 0.0001276 0.00% FillPatchSingleLevel 41 7.742e-05 8.808e-05 0.0001026 0.00% Castro::construct_old_source() 50 5.935e-05 7.587e-05 9.856e-05 0.00% FabArray::ParallelCopy() 41 7.31e-05 8.183e-05 9.336e-05 0.00% Castro::Castro() 1 6.235e-05 7.343e-05 8.046e-05 0.00% Castro::do_new_sources() 10 5.317e-05 6.56e-05 7.99e-05 0.00% Castro::apply_source_to_state() 20 4.207e-05 5.155e-05 6.449e-05 0.00% Castro::subcycle_advance_ctu() 10 3.744e-05 5.354e-05 6.367e-05 0.00% Castro::advance() 10 3.842e-05 5.006e-05 5.562e-05 0.00% Castro::construct_old_gravity() 10 3.448e-05 4.087e-05 4.43e-05 0.00% Castro::construct_new_gravity() 10 2.943e-05 3.441e-05 4.206e-05 0.00% Amr::defBaseLevel() 1 2.921e-05 3.204e-05 3.785e-05 0.00% Castro::check_for_nan() 20 2.267e-05 2.643e-05 3.204e-05 0.00% Castro::expand_state() 10 2.079e-05 2.683e-05 3.149e-05 0.00% Castro::post_timestep() 10 1.614e-05 1.872e-05 2.34e-05 0.00% Castro::post_init() 1 7.54e-06 9.146e-06 1.218e-05 0.00% Castro::computeNewDt() 9 7.544e-06 8.542e-06 9.658e-06 0.00% Amr::InitializeInit() 1 2.829e-06 3.773e-06 5.897e-06 0.00% Castro::computeInitialDt() 2 3.054e-06 3.523e-06 4.472e-06 0.00% Amr::init() 1 1.908e-06 2.637e-06 3.713e-06 0.00% Amr::initialInit() 1 1.654e-06 2.231e-06 2.809e-06 0.00% Other 262 0.02379 0.02662 0.02832 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.76 4.76 4.761 100.00% Amr::coarseTimeStep() 10 3.46 3.46 3.46 72.68% Amr::timeStep() 10 3.442 3.444 3.447 72.41% Castro::advance() 10 3.425 3.427 3.428 72.00% Castro::subcycle_advance_ctu() 10 3.342 3.348 3.356 70.50% Castro::do_advance_ctu() 10 3.342 3.348 3.356 70.50% Castro::construct_ctu_hydro_source() 10 2.547 2.55 2.556 53.68% Amr::writePlotFile() 2 1.121 1.121 1.121 23.56% VisMF::Write(FabArray) 2 0.009129 0.8331 1.11 23.32% Gravity::make_radial_gravity() 21 0.3212 0.3312 0.3384 7.11% AmrLevel::FillPatch() 41 0.2208 0.2291 0.2369 4.98% Gravity::get_new_grav_vector() 11 0.2112 0.2131 0.2162 4.54% Castro::construct_old_gravity() 10 0.2013 0.2067 0.2131 4.48% Gravity::get_old_grav_vector() 10 0.2005 0.2058 0.2121 4.46% check_for_negative_density() 10 0.0918 0.1593 0.2104 4.42% FillPatchIterator::Initialize 41 0.1865 0.1939 0.206 4.33% Castro::initialize_do_advance() 10 0.1825 0.1896 0.1978 4.15% Castro::construct_new_gravity() 10 0.1888 0.1903 0.1928 4.05% Amr::init() 1 0.1887 0.1889 0.1889 3.97% Amr::initialInit() 1 0.1742 0.1744 0.1746 3.67% FillPatchIterator::FillFromLevel0() 41 0.1362 0.1481 0.1722 3.62% FillPatchSingleLevel 41 0.1361 0.148 0.1721 3.61% Amr::InitializeInit() 1 0.06739 0.108 0.1477 3.10% Amr::defBaseLevel() 1 0.06738 0.108 0.1477 3.10% Castro::expand_state() 10 0.1261 0.1336 0.1458 3.06% FabArray::ParallelCopy() 41 0.1026 0.1143 0.1403 2.95% Castro::clean_state() 62 0.1169 0.1235 0.1303 2.74% Castro::initData() 1 0.05251 0.09144 0.1303 2.74% Castro::estTimeStep() 21 0.03557 0.07445 0.1191 2.50% Amr::FinalizeInit() 1 0.02662 0.06638 0.1068 2.24% Castro::do_old_sources() 10 0.09794 0.1036 0.1067 2.24% FabArray::ParallelCopy_finish() 41 0.05671 0.07147 0.1017 2.14% amrex::Copy() 193 0.07627 0.08478 0.0936 1.97% Castro::computeInitialDt() 2 0.00233 0.04193 0.08243 1.73% Castro::initialize_advance() 10 0.06554 0.07452 0.0806 1.69% FabArray::setVal() 143 0.06414 0.07235 0.08048 1.69% Castro::computeTemp() 63 0.06615 0.06963 0.07347 1.54% Castro::do_new_sources() 10 0.06442 0.06725 0.0721 1.51% Castro::normalize_species() 62 0.04166 0.04716 0.05345 1.12% Castro::reset_internal_energy(MultiFab) 63 0.0475 0.04892 0.05135 1.08% Castro::reset_internal_energy(Fab) 1008 0.04717 0.04862 0.05103 1.07% FabArray::ParallelCopy_nowait() 41 0.03845 0.04278 0.04586 0.96% StateDataPhysBCFunct::() 41 0.03172 0.03356 0.03567 0.75% StateData::FillBoundary(geom) 41 0.03156 0.03344 0.03558 0.75% Castro::construct_new_source() 50 0.02965 0.03125 0.03278 0.69% Gravity::interpolate_monopole_grav() 21 0.02737 0.02934 0.03055 0.64% Castro::finalize_do_advance() 10 0.01748 0.02397 0.02805 0.59% Castro::construct_new_gravity_source() 10 0.02332 0.0243 0.02552 0.54% Castro::post_init() 1 0.02347 0.02373 0.02403 0.50% Castro::post_timestep() 10 0.01592 0.01771 0.01949 0.41% Castro::apply_source_to_state() 20 0.01155 0.01318 0.0146 0.31% FabArray::Saxpy() 20 0.0115 0.01313 0.01454 0.31% Castro::check_for_nan() 20 0.009972 0.01162 0.01375 0.29% MultiFab::contains_nan() 20 0.009946 0.01159 0.01372 0.29% FabArray::setDomainBndry() 41 0.00708 0.01024 0.01213 0.25% Castro::Castro() 1 0.009519 0.01072 0.01148 0.24% Castro::construct_old_source() 50 0.007765 0.009674 0.01109 0.23% Castro::construct_old_gravity_source() 10 0.007705 0.009598 0.01099 0.23% Castro::computeNewDt() 9 0.009752 0.009762 0.009766 0.21% Other 262 0.0338 0.03815 0.04137 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 27 B 31 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-34-g6975ae0ed5ca) finalized