Initializing AMReX (24.07-34-g6975ae0ed5ca)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-34-g6975ae0ed5ca) initialized Starting run at 15:15:31 UTC on 2024-07-27. Successfully read inputs file ... Castro git describe: 24.07-40-g8828c4bf1 AMReX git describe: 24.07-34-g6975ae0ed Microphysics git describe: 24.07-36-gc75486b6 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.036016697 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.343695991 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338442001 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33322332 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.355218161 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.363365339 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.316834027 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311682551 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309402947 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309309564 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310993492 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007557066 seconds Ending run at 15:15:35 UTC on 2024-07-27. Run time = 3.508933446 Run time without initialization = 3.304421446 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.508 ... 3.509 ... 3.509 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2153 2.3339 2.3868 68.02% Gravity::make_radial_gravity() 21 0.2964 0.3028 0.3212 9.15% check_for_negative_density() 10 0.04505 0.1013 0.2235 6.37% Castro::initData() 1 0.04721 0.08643 0.1199 3.42% Castro::estTimeStep() 21 0.02219 0.06045 0.1018 2.90% FabArray::ParallelCopy_finish() 41 0.03778 0.05533 0.09453 2.69% amrex::Copy() 193 0.06488 0.08275 0.09381 2.67% FabArray::setVal() 143 0.05315 0.06507 0.07127 2.03% Castro::reset_internal_energy(Fab) 1008 0.04282 0.04523 0.04708 1.34% Castro::normalize_species() 62 0.04069 0.04166 0.04243 1.21% FabArray::ParallelCopy_nowait() 41 0.0347 0.04057 0.04218 1.20% FillPatchIterator::Initialize 41 0.02749 0.03315 0.0357 1.02% StateData::FillBoundary(geom) 41 0.03107 0.03283 0.03491 0.99% VisMF::Write(FabArray) 2 0.03062 0.03129 0.03459 0.99% Gravity::interpolate_monopole_grav() 21 0.0275 0.02997 0.03144 0.90% Castro::construct_new_gravity_source() 10 0.02161 0.02299 0.02406 0.69% Castro::computeTemp() 63 0.0176 0.0186 0.01983 0.57% Castro::initialize_do_advance() 10 0.01127 0.01605 0.01765 0.50% Castro::initialize_advance() 10 0.00527 0.01028 0.013 0.37% FabArray::Saxpy() 20 0.0105 0.01196 0.01288 0.37% MultiFab::contains_nan() 20 0.01001 0.01068 0.01179 0.34% FabArray::setDomainBndry() 41 0.007146 0.009517 0.01066 0.30% Amr::writePlotFile() 2 0.007312 0.00951 0.01003 0.29% Castro::construct_old_gravity_source() 10 0.006356 0.008717 0.009287 0.26% Castro::enforce_min_density() 62 0.006854 0.007228 0.007526 0.21% Castro::construct_new_source() 50 0.005415 0.006133 0.006359 0.18% main() 1 0.003416 0.003816 0.003994 0.11% Gravity::get_new_grav_vector() 11 0.002568 0.003353 0.003766 0.11% Gravity::get_old_grav_vector() 10 0.001454 0.002085 0.002639 0.08% Amr::coarseTimeStep() 10 0.001103 0.001755 0.002311 0.07% AmrLevel::FillPatch() 41 0.0007436 0.0009028 0.001099 0.03% Castro::finalize_do_advance() 10 0.0004701 0.0009701 0.001073 0.03% Amr::timeStep() 10 0.0001574 0.000217 0.000371 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002842 0.0002908 0.0003105 0.01% Castro::do_advance_ctu() 10 0.0001308 0.0001633 0.0001953 0.01% Castro::clean_state() 62 0.0001428 0.0001604 0.0001829 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001143 0.0001217 0.0001362 0.00% Castro::Castro() 1 7.242e-05 9.193e-05 0.0001174 0.00% StateDataPhysBCFunct::() 41 9.895e-05 0.0001056 0.0001119 0.00% Castro::do_old_sources() 10 7.227e-05 8.524e-05 9.913e-05 0.00% FillPatchSingleLevel 41 7.575e-05 7.918e-05 8.267e-05 0.00% Castro::construct_old_source() 50 5.379e-05 6.917e-05 8.222e-05 0.00% FabArray::ParallelCopy() 41 7.221e-05 7.725e-05 8.164e-05 0.00% Amr::FinalizeInit() 1 3.215e-06 1.221e-05 6.853e-05 0.00% Castro::do_new_sources() 10 4.542e-05 5.64e-05 6.34e-05 0.00% Castro::subcycle_advance_ctu() 10 3.728e-05 4.556e-05 5.843e-05 0.00% Castro::apply_source_to_state() 20 3.962e-05 4.778e-05 5.509e-05 0.00% Castro::construct_old_gravity() 10 3.132e-05 3.937e-05 4.709e-05 0.00% Castro::advance() 10 3.372e-05 4.228e-05 4.685e-05 0.00% Amr::defBaseLevel() 1 3.262e-05 4.229e-05 4.654e-05 0.00% Castro::construct_new_gravity() 10 3.002e-05 3.448e-05 3.848e-05 0.00% Castro::check_for_nan() 20 2.378e-05 2.595e-05 3.015e-05 0.00% Castro::expand_state() 10 1.976e-05 2.307e-05 2.647e-05 0.00% Castro::post_init() 1 7.717e-06 1.255e-05 1.873e-05 0.00% Castro::post_timestep() 10 1.308e-05 1.6e-05 1.85e-05 0.00% Castro::computeNewDt() 9 7.804e-06 8.592e-06 9.223e-06 0.00% Amr::InitializeInit() 1 2.849e-06 3.92e-06 6.782e-06 0.00% Castro::computeInitialDt() 2 3.099e-06 3.773e-06 5.428e-06 0.00% Amr::initialInit() 1 1.207e-06 1.906e-06 2.829e-06 0.00% Amr::init() 1 1.674e-06 2.286e-06 2.619e-06 0.00% Other 200 0.01612 0.01962 0.02134 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.508 3.509 3.509 100.00% Amr::coarseTimeStep() 10 3.293 3.293 3.293 93.84% Amr::timeStep() 10 3.281 3.281 3.282 93.53% Castro::advance() 10 3.265 3.266 3.266 93.07% Castro::subcycle_advance_ctu() 10 3.193 3.197 3.214 91.58% Castro::do_advance_ctu() 10 3.193 3.197 3.213 91.58% Castro::construct_ctu_hydro_source() 10 2.452 2.455 2.459 70.07% Gravity::make_radial_gravity() 21 0.3117 0.3191 0.3342 9.52% check_for_negative_density() 10 0.04505 0.1013 0.2235 6.37% AmrLevel::FillPatch() 41 0.1896 0.2046 0.2233 6.36% Castro::construct_old_gravity() 10 0.1948 0.2008 0.2191 6.24% Gravity::get_old_grav_vector() 10 0.194 0.2002 0.2185 6.23% Gravity::get_new_grav_vector() 11 0.2053 0.2066 0.2079 5.92% Amr::init() 1 0.2039 0.2041 0.2041 5.82% FillPatchIterator::Initialize 41 0.1567 0.1719 0.1976 5.63% Castro::construct_new_gravity() 10 0.1837 0.1843 0.1849 5.27% Amr::initialInit() 1 0.1677 0.1683 0.1685 4.80% Castro::initialize_do_advance() 10 0.1579 0.1623 0.1662 4.74% FillPatchIterator::FillFromLevel0() 41 0.1117 0.1292 0.163 4.65% FillPatchSingleLevel 41 0.1116 0.1291 0.1629 4.64% Amr::InitializeInit() 1 0.06818 0.1079 0.142 4.05% Amr::defBaseLevel() 1 0.06818 0.1079 0.142 4.05% FabArray::ParallelCopy() 41 0.08003 0.09606 0.1294 3.69% Castro::initData() 1 0.05112 0.09026 0.1236 3.52% Castro::expand_state() 10 0.1048 0.1101 0.1205 3.43% Castro::clean_state() 62 0.1083 0.1123 0.1161 3.31% Castro::do_old_sources() 10 0.09206 0.09747 0.1037 2.96% Castro::estTimeStep() 21 0.02219 0.06045 0.1018 2.90% Amr::FinalizeInit() 1 0.02644 0.06039 0.1003 2.86% FabArray::ParallelCopy_finish() 41 0.03778 0.05533 0.09453 2.69% amrex::Copy() 193 0.06488 0.08275 0.09381 2.67% Castro::computeInitialDt() 2 0.002408 0.03646 0.07624 2.17% FabArray::setVal() 143 0.05315 0.06507 0.07127 2.03% Castro::initialize_advance() 10 0.04832 0.06492 0.069 1.97% Castro::computeTemp() 63 0.0607 0.06412 0.067 1.91% Castro::do_new_sources() 10 0.05529 0.06134 0.06514 1.86% Castro::reset_internal_energy(MultiFab) 63 0.04311 0.04552 0.04739 1.35% Castro::reset_internal_energy(Fab) 1008 0.04282 0.04523 0.04708 1.34% Amr::writePlotFile() 2 0.04329 0.04339 0.04381 1.25% Castro::normalize_species() 62 0.04069 0.04166 0.04243 1.21% FabArray::ParallelCopy_nowait() 41 0.03479 0.04065 0.04226 1.20% StateDataPhysBCFunct::() 41 0.03118 0.03294 0.03501 1.00% StateData::FillBoundary(geom) 41 0.03107 0.03283 0.03491 0.99% VisMF::Write(FabArray) 2 0.03062 0.03129 0.03459 0.99% Gravity::interpolate_monopole_grav() 21 0.0275 0.02997 0.03144 0.90% Castro::construct_new_source() 50 0.02703 0.02913 0.03036 0.87% Castro::construct_new_gravity_source() 10 0.02161 0.02299 0.02406 0.69% Castro::post_init() 1 0.02317 0.02364 0.02377 0.68% Castro::finalize_do_advance() 10 0.01207 0.01618 0.0223 0.64% Castro::post_timestep() 10 0.01473 0.01532 0.01575 0.45% Castro::apply_source_to_state() 20 0.01054 0.01201 0.01294 0.37% FabArray::Saxpy() 20 0.0105 0.01196 0.01288 0.37% Castro::Castro() 1 0.009162 0.01142 0.01211 0.35% Castro::check_for_nan() 20 0.01004 0.01071 0.01182 0.34% MultiFab::contains_nan() 20 0.01001 0.01068 0.01179 0.34% FabArray::setDomainBndry() 41 0.007146 0.009517 0.01066 0.30% Castro::construct_old_source() 50 0.00641 0.008786 0.009368 0.27% Castro::construct_old_gravity_source() 10 0.006356 0.008717 0.009287 0.26% Castro::computeNewDt() 9 0.008776 0.008791 0.008803 0.25% Castro::enforce_min_density() 62 0.006854 0.007228 0.007526 0.21% Other 200 0.02648 0.03055 0.03304 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 39 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-34-g6975ae0ed5ca) finalized