Initializing AMReX (24.07-35-g20e6f2eadf0c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-35-g20e6f2eadf0c) initialized Starting run at 11:55:11 UTC on 2024-07-28. Successfully read inputs file ... Castro git describe: 24.07-30-g660f4e97f AMReX git describe: 24.07-35-g20e6f2ead Microphysics git describe: 24.07-36-gc75486b6 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014155931 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.347120413 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349397649 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.32451526 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.321405546 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.365101911 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.317274136 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.306864384 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307007712 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309254937 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308852799 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.279132274 seconds Ending run at 11:55:15 UTC on 2024-07-28. Run time = 3.725100685 Run time without initialization = 3.54047276 Average number of zones advanced per microsecond: 0.740 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.725 ... 3.725 ... 3.725 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2537 2.3130 2.3840 64.00% Gravity::make_radial_gravity() 21 0.288 0.2951 0.3085 8.28% Amr::writePlotFile() 2 0.2784 0.2807 0.2816 7.56% check_for_negative_density() 10 0.02951 0.1053 0.1686 4.52% Castro::initData() 1 0.04908 0.08557 0.1225 3.29% Castro::estTimeStep() 21 0.02346 0.06746 0.1082 2.91% amrex::Copy() 193 0.06273 0.07851 0.08707 2.34% FabArray::ParallelCopy_finish() 41 0.03591 0.04509 0.08163 2.19% FabArray::setVal() 143 0.05272 0.0646 0.06954 1.87% Castro::reset_internal_energy(Fab) 1008 0.04335 0.04578 0.04936 1.33% Castro::normalize_species() 62 0.0415 0.0427 0.04609 1.24% FabArray::ParallelCopy_nowait() 41 0.03616 0.04051 0.04243 1.14% StateData::FillBoundary(geom) 41 0.02851 0.03167 0.03471 0.93% FillPatchIterator::Initialize 41 0.02674 0.03152 0.03397 0.91% Gravity::interpolate_monopole_grav() 21 0.02746 0.02913 0.03003 0.81% Castro::construct_new_gravity_source() 10 0.02281 0.02424 0.02623 0.70% Castro::computeTemp() 63 0.01762 0.01893 0.02035 0.55% Castro::initialize_do_advance() 10 0.01164 0.01584 0.01743 0.47% Castro::initialize_advance() 10 0.005402 0.01063 0.01353 0.36% FabArray::Saxpy() 20 0.0105 0.01228 0.0134 0.36% VisMF::Write(FabArray) 2 0.009065 0.009697 0.0132 0.35% MultiFab::contains_nan() 20 0.01017 0.01114 0.01205 0.32% Castro::construct_old_gravity_source() 10 0.007187 0.009551 0.01011 0.27% FabArray::setDomainBndry() 41 0.006921 0.009082 0.0101 0.27% Castro::initMFs() 1 0.00654 0.00719 0.008052 0.22% Castro::construct_new_source() 50 0.005801 0.00617 0.00645 0.17% main() 1 0.00344 0.003705 0.003807 0.10% Gravity::get_new_grav_vector() 11 0.002808 0.003284 0.003475 0.09% Amr::coarseTimeStep() 10 0.001531 0.00266 0.003347 0.09% Gravity::get_old_grav_vector() 10 0.001431 0.001991 0.002543 0.07% AmrLevel::FillPatch() 41 0.0006326 0.0009758 0.00124 0.03% Castro::finalize_do_advance() 10 0.0003956 0.0009769 0.001088 0.03% Amr::timeStep() 10 0.0001664 0.0002104 0.0003903 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002964 0.0003129 0.000334 0.01% Castro::do_advance_ctu() 10 0.0001299 0.0001497 0.0001857 0.00% Castro::clean_state() 62 0.0001372 0.0001594 0.0001737 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001011 0.0001164 0.0001242 0.00% StateDataPhysBCFunct::() 41 9.511e-05 0.0001072 0.0001156 0.00% Castro::do_old_sources() 10 7.3e-05 8.843e-05 0.0001047 0.00% Castro::Castro() 1 6.714e-05 8.287e-05 0.0001008 0.00% Castro::construct_old_source() 50 5.369e-05 7.234e-05 8.836e-05 0.00% Amr::FinalizeInit() 1 3.935e-06 1.519e-05 8.607e-05 0.00% FabArray::ParallelCopy() 41 6.96e-05 7.728e-05 8.309e-05 0.00% FillPatchSingleLevel 41 6.753e-05 7.513e-05 8.229e-05 0.00% Castro::do_new_sources() 10 5.402e-05 6.006e-05 7.106e-05 0.00% Castro::apply_source_to_state() 20 3.718e-05 4.912e-05 5.863e-05 0.00% Castro::subcycle_advance_ctu() 10 3.898e-05 4.724e-05 5.494e-05 0.00% Castro::advance() 10 4.201e-05 4.511e-05 5.423e-05 0.00% Castro::construct_new_gravity() 10 3.169e-05 3.477e-05 4.164e-05 0.00% Castro::construct_old_gravity() 10 3.293e-05 3.787e-05 4.134e-05 0.00% Amr::defBaseLevel() 1 3.069e-05 3.294e-05 3.625e-05 0.00% Castro::expand_state() 10 2.136e-05 2.49e-05 3.14e-05 0.00% Castro::check_for_nan() 20 2.217e-05 2.537e-05 2.969e-05 0.00% Castro::computeInitialDt() 2 2.965e-06 5.505e-06 2.084e-05 0.00% Castro::post_timestep() 10 1.408e-05 1.602e-05 2.083e-05 0.00% Castro::post_init() 1 8.236e-06 1.042e-05 1.385e-05 0.00% Castro::computeNewDt() 9 7.882e-06 8.401e-06 9.13e-06 0.00% Amr::InitializeInit() 1 2.719e-06 3.481e-06 5.306e-06 0.00% Amr::init() 1 1.691e-06 2.347e-06 3.264e-06 0.00% Amr::initialInit() 1 1.545e-06 1.917e-06 2.972e-06 0.00% Other 261 0.01484 0.01825 0.01959 0.53% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.725 3.725 3.725 100.00% Amr::coarseTimeStep() 10 3.258 3.258 3.258 87.45% Amr::timeStep() 10 3.244 3.245 3.246 87.13% Castro::advance() 10 3.229 3.229 3.23 86.70% Castro::subcycle_advance_ctu() 10 3.155 3.159 3.174 85.19% Castro::do_advance_ctu() 10 3.155 3.159 3.174 85.19% Castro::construct_ctu_hydro_source() 10 2.434 2.439 2.444 65.62% Gravity::make_radial_gravity() 21 0.3041 0.3114 0.3223 8.65% Amr::writePlotFile() 2 0.293 0.2931 0.2935 7.88% Gravity::get_new_grav_vector() 11 0.2063 0.2091 0.2106 5.65% AmrLevel::FillPatch() 41 0.1799 0.1907 0.2049 5.50% Castro::construct_old_gravity() 10 0.1796 0.1846 0.1939 5.21% Gravity::get_old_grav_vector() 10 0.1788 0.1839 0.1933 5.19% Castro::construct_new_gravity() 10 0.1847 0.1869 0.1884 5.06% Amr::init() 1 0.1841 0.1842 0.1843 4.95% FillPatchIterator::Initialize 41 0.1484 0.1583 0.1804 4.84% Amr::initialInit() 1 0.1698 0.1703 0.1705 4.58% check_for_negative_density() 10 0.02951 0.1053 0.1686 4.52% Castro::initialize_do_advance() 10 0.1527 0.1582 0.1627 4.37% FillPatchIterator::FillFromLevel0() 41 0.1115 0.1177 0.1468 3.94% FillPatchSingleLevel 41 0.1114 0.1176 0.1467 3.94% Amr::InitializeInit() 1 0.0684 0.1064 0.1443 3.87% Amr::defBaseLevel() 1 0.0684 0.1064 0.1443 3.87% Castro::initData() 1 0.05305 0.08927 0.1262 3.39% Castro::clean_state() 62 0.1087 0.113 0.1184 3.18% FabArray::ParallelCopy() 41 0.07685 0.08577 0.118 3.17% Castro::expand_state() 10 0.09927 0.1062 0.1159 3.11% Castro::estTimeStep() 21 0.02346 0.06746 0.1082 2.91% Amr::FinalizeInit() 1 0.02612 0.06391 0.1014 2.72% Castro::do_old_sources() 10 0.0898 0.09196 0.09346 2.51% amrex::Copy() 193 0.06273 0.07851 0.08707 2.34% FabArray::ParallelCopy_finish() 41 0.03591 0.04509 0.08163 2.19% Castro::computeInitialDt() 2 0.002194 0.04004 0.07794 2.09% Castro::initialize_advance() 10 0.05172 0.0671 0.0711 1.91% Castro::computeTemp() 63 0.06128 0.06503 0.07004 1.88% FabArray::setVal() 143 0.05272 0.0646 0.06954 1.87% Castro::do_new_sources() 10 0.05925 0.06291 0.0684 1.84% Castro::reset_internal_energy(MultiFab) 63 0.04365 0.04609 0.04968 1.33% Castro::reset_internal_energy(Fab) 1008 0.04335 0.04578 0.04936 1.33% Castro::normalize_species() 62 0.0415 0.0427 0.04609 1.24% FabArray::ParallelCopy_nowait() 41 0.03627 0.0406 0.04251 1.14% StateDataPhysBCFunct::() 41 0.02861 0.03178 0.03483 0.93% StateData::FillBoundary(geom) 41 0.02851 0.03167 0.03471 0.93% Castro::construct_new_source() 50 0.02901 0.03041 0.03267 0.88% Gravity::interpolate_monopole_grav() 21 0.02746 0.02913 0.03003 0.81% Castro::construct_new_gravity_source() 10 0.02281 0.02424 0.02623 0.70% Castro::finalize_do_advance() 10 0.01319 0.01933 0.02381 0.64% Castro::post_init() 1 0.02291 0.0234 0.02355 0.63% Castro::post_timestep() 10 0.01466 0.01534 0.01696 0.46% Castro::apply_source_to_state() 20 0.01055 0.01232 0.01346 0.36% FabArray::Saxpy() 20 0.0105 0.01228 0.0134 0.36% VisMF::Write(FabArray) 2 0.009065 0.009697 0.0132 0.35% Castro::check_for_nan() 20 0.01019 0.01117 0.01208 0.32% MultiFab::contains_nan() 20 0.01017 0.01114 0.01205 0.32% Castro::Castro() 1 0.009883 0.01101 0.01203 0.32% Castro::construct_old_source() 50 0.007241 0.009623 0.0102 0.27% Castro::construct_old_gravity_source() 10 0.007187 0.009551 0.01011 0.27% FabArray::setDomainBndry() 41 0.006921 0.009082 0.0101 0.27% Castro::computeNewDt() 9 0.009051 0.009079 0.009106 0.24% Castro::initMFs() 1 0.00654 0.00719 0.008052 0.22% Other 261 0.02485 0.02915 0.03111 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-35-g20e6f2eadf0c) finalized