Initializing AMReX (24.07-35-g20e6f2eadf0c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-35-g20e6f2eadf0c) initialized Starting run at 05:25:05 UTC on 2024-07-29. Successfully read inputs file ... Castro git describe: 24.07-34-gdbc6f6b13 AMReX git describe: 24.07-35-g20e6f2ead Microphysics git describe: 24.07-38-g83ce77ce reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014523718 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348406922 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.33803101 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.334105168 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.329682868 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.387398557 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.331328454 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.314779231 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.313944687 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.315604595 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.315448073 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008769507 seconds Ending run at 05:25:08 UTC on 2024-07-29. Run time = 3.535559081 Run time without initialization = 3.343094679 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.534 ... 3.535 ... 3.536 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2726 2.3192 2.3599 66.75% Gravity::make_radial_gravity() 21 0.2964 0.3047 0.3182 9.00% check_for_negative_density() 10 0.08223 0.1248 0.1773 5.01% Castro::initData() 1 0.04841 0.08724 0.1262 3.57% Castro::estTimeStep() 21 0.03411 0.07127 0.1109 3.14% FabArray::ParallelCopy_finish() 41 0.04526 0.06809 0.1079 3.05% amrex::Copy() 193 0.06245 0.08163 0.09534 2.70% FabArray::setVal() 143 0.05858 0.06621 0.07001 1.98% Castro::reset_internal_energy(Fab) 1008 0.04289 0.04734 0.05115 1.45% Castro::normalize_species() 62 0.04125 0.0433 0.05001 1.41% FabArray::ParallelCopy_nowait() 41 0.03839 0.0416 0.04378 1.24% StateData::FillBoundary(geom) 41 0.03073 0.03395 0.03833 1.08% FillPatchIterator::Initialize 41 0.02819 0.0338 0.03819 1.08% Gravity::interpolate_monopole_grav() 21 0.02708 0.02912 0.0308 0.87% Castro::construct_new_gravity_source() 10 0.02396 0.02517 0.02786 0.79% Castro::computeTemp() 63 0.01794 0.01957 0.02057 0.58% Castro::initialize_do_advance() 10 0.01185 0.01636 0.01839 0.52% VisMF::Write(FabArray) 2 0.009157 0.009886 0.01323 0.37% FabArray::Saxpy() 20 0.01074 0.01211 0.01318 0.37% Castro::initialize_advance() 10 0.009926 0.01132 0.01287 0.36% MultiFab::contains_nan() 20 0.01082 0.01173 0.01261 0.36% Amr::writePlotFile() 2 0.007875 0.01047 0.01107 0.31% Castro::construct_old_gravity_source() 10 0.007374 0.009279 0.01083 0.31% FabArray::setDomainBndry() 41 0.007805 0.009545 0.01064 0.30% Castro::initMFs() 1 0.006431 0.007067 0.007468 0.21% Castro::construct_new_source() 50 0.005635 0.006165 0.006361 0.18% main() 1 0.003565 0.004385 0.005163 0.15% Gravity::get_new_grav_vector() 11 0.00303 0.003476 0.00373 0.11% Amr::coarseTimeStep() 10 0.00121 0.001683 0.002518 0.07% Gravity::get_old_grav_vector() 10 0.00157 0.002088 0.002509 0.07% Castro::finalize_do_advance() 10 0.0004692 0.00104 0.001481 0.04% AmrLevel::FillPatch() 41 0.0008068 0.0009568 0.001163 0.03% Amr::timeStep() 10 0.0001943 0.0002296 0.0003989 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002909 0.0003119 0.000339 0.01% Castro::do_advance_ctu() 10 0.0001366 0.0001691 0.0002132 0.01% Castro::clean_state() 62 0.0001461 0.0001579 0.0001702 0.00% Castro::do_old_sources() 10 7.567e-05 9.906e-05 0.0001337 0.00% StateDataPhysBCFunct::() 41 0.000108 0.0001164 0.0001291 0.00% FillPatchIterator::FillFromLevel0() 41 0.000104 0.0001183 0.000128 0.00% Castro::Castro() 1 6.642e-05 8.293e-05 9.665e-05 0.00% FabArray::ParallelCopy() 41 7.785e-05 8.302e-05 9.023e-05 0.00% Amr::FinalizeInit() 1 3.03e-06 1.522e-05 8.686e-05 0.00% FillPatchSingleLevel 41 7.093e-05 7.732e-05 8.255e-05 0.00% Castro::construct_old_source() 50 5.423e-05 6.833e-05 7.688e-05 0.00% Castro::do_new_sources() 10 5.108e-05 5.943e-05 6.534e-05 0.00% Castro::subcycle_advance_ctu() 10 4.011e-05 4.663e-05 5.267e-05 0.00% Castro::advance() 10 3.36e-05 4.211e-05 5.088e-05 0.00% Castro::construct_old_gravity() 10 3.694e-05 4.256e-05 4.885e-05 0.00% Castro::apply_source_to_state() 20 3.677e-05 4.273e-05 4.659e-05 0.00% Amr::defBaseLevel() 1 3.609e-05 4.056e-05 4.609e-05 0.00% Castro::construct_new_gravity() 10 2.903e-05 3.56e-05 3.93e-05 0.00% Castro::check_for_nan() 20 2.33e-05 2.875e-05 3.537e-05 0.00% Castro::expand_state() 10 1.874e-05 2.345e-05 3.039e-05 0.00% Castro::post_timestep() 10 1.6e-05 1.781e-05 1.983e-05 0.00% Castro::post_init() 1 8.691e-06 1.067e-05 1.556e-05 0.00% Castro::computeNewDt() 9 7.392e-06 8.182e-06 8.827e-06 0.00% Amr::InitializeInit() 1 2.721e-06 3.317e-06 6.476e-06 0.00% Castro::computeInitialDt() 2 3.234e-06 3.896e-06 4.681e-06 0.00% Amr::init() 1 1.958e-06 2.413e-06 2.794e-06 0.00% Amr::initialInit() 1 1.315e-06 1.756e-06 2.142e-06 0.00% Other 261 0.01509 0.01835 0.01979 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.534 3.535 3.536 100.00% Amr::coarseTimeStep() 10 3.329 3.329 3.329 94.16% Amr::timeStep() 10 3.316 3.317 3.318 93.84% Castro::advance() 10 3.301 3.302 3.302 93.39% Castro::subcycle_advance_ctu() 10 3.227 3.23 3.241 91.66% Castro::do_advance_ctu() 10 3.227 3.23 3.241 91.66% Castro::construct_ctu_hydro_source() 10 2.459 2.465 2.47 69.85% Gravity::make_radial_gravity() 21 0.3122 0.3205 0.3315 9.37% AmrLevel::FillPatch() 41 0.1977 0.2195 0.2388 6.76% Gravity::get_new_grav_vector() 11 0.2111 0.2124 0.2139 6.05% FillPatchIterator::Initialize 41 0.1697 0.1875 0.2136 6.04% Castro::construct_old_gravity() 10 0.1887 0.1959 0.2042 5.77% Gravity::get_old_grav_vector() 10 0.188 0.1952 0.2034 5.75% Amr::init() 1 0.1919 0.1921 0.1921 5.43% Castro::construct_new_gravity() 10 0.186 0.1865 0.1878 5.31% Amr::initialInit() 1 0.1772 0.1778 0.1779 5.03% FillPatchIterator::FillFromLevel0() 41 0.1225 0.1441 0.1775 5.02% FillPatchSingleLevel 41 0.1223 0.144 0.1774 5.02% check_for_negative_density() 10 0.08223 0.1248 0.1773 5.01% Castro::initialize_do_advance() 10 0.1562 0.1656 0.1705 4.82% Amr::InitializeInit() 1 0.06987 0.1081 0.148 4.19% Amr::defBaseLevel() 1 0.06987 0.1081 0.148 4.18% FabArray::ParallelCopy() 41 0.08664 0.1099 0.1465 4.14% Castro::initData() 1 0.05215 0.09095 0.1299 3.68% Castro::clean_state() 62 0.1085 0.1158 0.1263 3.57% Castro::do_old_sources() 10 0.1039 0.1135 0.1233 3.49% Castro::expand_state() 10 0.1027 0.1119 0.12 3.40% Castro::estTimeStep() 21 0.03411 0.07127 0.1109 3.14% Amr::FinalizeInit() 1 0.02993 0.06969 0.108 3.05% FabArray::ParallelCopy_finish() 41 0.04526 0.06809 0.1079 3.05% amrex::Copy() 193 0.06245 0.08163 0.09534 2.70% Castro::computeInitialDt() 2 0.002241 0.04209 0.08035 2.27% Castro::initialize_advance() 10 0.05679 0.06809 0.07169 2.03% Castro::computeTemp() 63 0.06113 0.06722 0.07156 2.02% FabArray::setVal() 143 0.05858 0.06621 0.07001 1.98% Castro::do_new_sources() 10 0.06171 0.06397 0.0684 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04319 0.04765 0.05149 1.46% Castro::reset_internal_energy(Fab) 1008 0.04289 0.04734 0.05115 1.45% Castro::normalize_species() 62 0.04125 0.0433 0.05001 1.41% FabArray::ParallelCopy_nowait() 41 0.03848 0.04169 0.04386 1.24% StateDataPhysBCFunct::() 41 0.03085 0.03406 0.03844 1.09% StateData::FillBoundary(geom) 41 0.03073 0.03395 0.03833 1.08% Castro::construct_new_source() 50 0.0301 0.03134 0.03404 0.96% Gravity::interpolate_monopole_grav() 21 0.02708 0.02912 0.0308 0.87% Castro::construct_new_gravity_source() 10 0.02396 0.02517 0.02786 0.79% Castro::post_init() 1 0.02633 0.02712 0.02733 0.77% Castro::finalize_do_advance() 10 0.01631 0.02115 0.02385 0.67% Amr::writePlotFile() 2 0.02305 0.02315 0.02354 0.67% Castro::post_timestep() 10 0.01474 0.01552 0.01596 0.45% VisMF::Write(FabArray) 2 0.009157 0.009886 0.01323 0.37% Castro::apply_source_to_state() 20 0.01078 0.01216 0.01322 0.37% FabArray::Saxpy() 20 0.01074 0.01211 0.01318 0.37% Castro::check_for_nan() 20 0.01085 0.01176 0.01264 0.36% MultiFab::contains_nan() 20 0.01082 0.01173 0.01261 0.36% Castro::Castro() 1 0.009282 0.011 0.01168 0.33% Castro::construct_old_source() 50 0.007428 0.009348 0.01089 0.31% Castro::construct_old_gravity_source() 10 0.007374 0.009279 0.01083 0.31% FabArray::setDomainBndry() 41 0.007805 0.009545 0.01064 0.30% Castro::computeNewDt() 9 0.009071 0.009081 0.009093 0.26% Castro::initMFs() 1 0.006431 0.007067 0.007468 0.21% Other 261 0.02501 0.02935 0.03195 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 36 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-35-g20e6f2eadf0c) finalized