Initializing AMReX (24.07-35-g20e6f2eadf0c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-35-g20e6f2eadf0c) initialized Starting run at 05:23:40 UTC on 2024-07-30. Successfully read inputs file ... Castro git describe: 24.07-35-gc7c6acad2 AMReX git describe: 24.07-35-g20e6f2ead Microphysics git describe: 24.07-39-g727afa98 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015779675 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.358901021 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.326273383 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.341484221 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.359574795 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.3499136 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.3140205 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.3120886 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.315301011 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.315030356 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.317073841 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009177579 seconds Ending run at 05:23:43 UTC on 2024-07-30. Run time = 3.536265071 Run time without initialization = 3.324545582 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.535 ... 3.536 ... 3.536 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1733 2.2931 2.3640 66.85% Gravity::make_radial_gravity() 21 0.3023 0.3089 0.3143 8.89% check_for_negative_density() 10 0.05428 0.127 0.244 6.90% Castro::estTimeStep() 21 0.04243 0.08938 0.1461 4.13% Castro::initData() 1 0.0473 0.09368 0.1443 4.08% FabArray::ParallelCopy_finish() 41 0.04641 0.06611 0.0949 2.68% amrex::Copy() 193 0.06451 0.07638 0.0827 2.34% FabArray::setVal() 143 0.05952 0.06781 0.07908 2.24% Castro::reset_internal_energy(Fab) 1008 0.04491 0.04673 0.04784 1.35% Castro::normalize_species() 62 0.04165 0.04295 0.04374 1.24% FabArray::ParallelCopy_nowait() 41 0.0335 0.03917 0.04116 1.16% StateData::FillBoundary(geom) 41 0.03087 0.03261 0.03585 1.01% FillPatchIterator::Initialize 41 0.02935 0.03271 0.03576 1.01% Gravity::interpolate_monopole_grav() 21 0.02845 0.03011 0.03432 0.97% Castro::construct_new_gravity_source() 10 0.02268 0.02501 0.02989 0.85% Castro::initialize_do_advance() 10 0.01388 0.01743 0.02115 0.60% Castro::computeTemp() 63 0.01838 0.01934 0.02049 0.58% VisMF::Write(FabArray) 2 0.009308 0.01051 0.01473 0.42% Amr::writePlotFile() 2 0.007793 0.01225 0.01472 0.42% FabArray::Saxpy() 20 0.009565 0.0119 0.01325 0.37% Castro::initialize_advance() 10 0.00546 0.009876 0.01266 0.36% MultiFab::contains_nan() 20 0.01025 0.01115 0.0118 0.33% Amr::coarseTimeStep() 10 0.001959 0.007568 0.01078 0.30% FabArray::setDomainBndry() 41 0.007002 0.009002 0.01007 0.28% Castro::initMFs() 1 0.006442 0.007826 0.009952 0.28% Castro::construct_old_gravity_source() 10 0.006133 0.008697 0.009185 0.26% Castro::construct_new_source() 50 0.005689 0.005983 0.006159 0.17% main() 1 0.003621 0.00428 0.005045 0.14% Gravity::get_new_grav_vector() 11 0.002707 0.003349 0.003694 0.10% Gravity::get_old_grav_vector() 10 0.0016 0.001973 0.002524 0.07% Castro::finalize_do_advance() 10 0.0004242 0.001042 0.001425 0.04% AmrLevel::FillPatch() 41 0.0006208 0.000871 0.001036 0.03% Amr::timeStep() 10 0.0001694 0.0002174 0.000417 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002912 0.0002986 0.00031 0.01% Castro::Castro() 1 6.205e-05 0.0001001 0.0003068 0.01% Castro::do_advance_ctu() 10 0.0001228 0.0001476 0.0001645 0.00% Castro::clean_state() 62 0.0001385 0.0001482 0.0001561 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001079 0.0001177 0.0001323 0.00% StateDataPhysBCFunct::() 41 9.763e-05 0.000111 0.0001299 0.00% Castro::do_old_sources() 10 5.904e-05 8.352e-05 9.503e-05 0.00% FabArray::ParallelCopy() 41 7.177e-05 7.971e-05 9.278e-05 0.00% FillPatchSingleLevel 41 7.052e-05 7.673e-05 8.869e-05 0.00% Castro::construct_old_source() 50 4.886e-05 6.93e-05 8.014e-05 0.00% Castro::do_new_sources() 10 4.808e-05 6.153e-05 7.478e-05 0.00% Amr::FinalizeInit() 1 3.454e-06 1.453e-05 7.109e-05 0.00% Castro::subcycle_advance_ctu() 10 4.408e-05 5.139e-05 6.182e-05 0.00% Castro::advance() 10 3.892e-05 4.418e-05 5.22e-05 0.00% Castro::apply_source_to_state() 20 3.59e-05 4.59e-05 5.111e-05 0.00% Castro::construct_old_gravity() 10 3.018e-05 3.674e-05 4.896e-05 0.00% Amr::defBaseLevel() 1 3.402e-05 3.892e-05 4.642e-05 0.00% Castro::construct_new_gravity() 10 2.94e-05 3.337e-05 4.006e-05 0.00% Castro::check_for_nan() 20 2.202e-05 2.59e-05 3.312e-05 0.00% Castro::post_timestep() 10 1.591e-05 2.03e-05 2.703e-05 0.00% Castro::expand_state() 10 1.915e-05 2.284e-05 2.663e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.165e-05 1.605e-05 2.125e-05 0.00% Castro::post_init() 1 7.428e-06 8.697e-06 1.08e-05 0.00% Castro::computeNewDt() 9 7.379e-06 8.452e-06 9.312e-06 0.00% Amr::init() 1 1.727e-06 2.836e-06 7.973e-06 0.00% Castro::computeInitialDt() 2 3.416e-06 4.169e-06 5.779e-06 0.00% Amr::InitializeInit() 1 2.706e-06 3.448e-06 5.425e-06 0.00% Amr::initialInit() 1 1.353e-06 1.475e-06 1.801e-06 0.00% Other 260 0.01583 0.01895 0.02238 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.535 3.536 3.536 100.00% Amr::coarseTimeStep() 10 3.31 3.31 3.31 93.61% Amr::timeStep() 10 3.289 3.293 3.298 93.27% Castro::advance() 10 3.274 3.276 3.279 92.72% Castro::subcycle_advance_ctu() 10 3.193 3.203 3.21 90.78% Castro::do_advance_ctu() 10 3.193 3.203 3.21 90.78% Castro::construct_ctu_hydro_source() 10 2.437 2.441 2.444 69.11% Gravity::make_radial_gravity() 21 0.3187 0.325 0.3304 9.34% check_for_negative_density() 10 0.05428 0.127 0.244 6.90% AmrLevel::FillPatch() 41 0.19 0.2108 0.2307 6.52% Gravity::get_new_grav_vector() 11 0.2241 0.2259 0.2275 6.43% Amr::init() 1 0.2112 0.2113 0.2113 5.98% Castro::construct_new_gravity() 10 0.1999 0.2008 0.2018 5.71% FillPatchIterator::Initialize 41 0.1608 0.1801 0.1969 5.57% Amr::initialInit() 1 0.1949 0.1952 0.1956 5.53% Castro::construct_old_gravity() 10 0.1854 0.1913 0.1954 5.52% Gravity::get_old_grav_vector() 10 0.1846 0.1903 0.1947 5.51% Castro::initialize_do_advance() 10 0.1596 0.1695 0.1814 5.13% Amr::InitializeInit() 1 0.06729 0.1154 0.1662 4.70% Amr::defBaseLevel() 1 0.06729 0.1154 0.1662 4.70% FillPatchIterator::FillFromLevel0() 41 0.1215 0.1384 0.1605 4.54% FillPatchSingleLevel 41 0.1214 0.1382 0.1604 4.54% Castro::initData() 1 0.05098 0.0973 0.148 4.19% Castro::estTimeStep() 21 0.04243 0.08938 0.1461 4.13% Castro::expand_state() 10 0.1033 0.116 0.1293 3.66% FabArray::ParallelCopy() 41 0.08704 0.1054 0.1286 3.64% Amr::FinalizeInit() 1 0.0294 0.07984 0.1276 3.61% Castro::clean_state() 62 0.111 0.1146 0.1172 3.32% Castro::computeInitialDt() 2 0.002552 0.05334 0.1015 2.87% Castro::do_old_sources() 10 0.08954 0.09294 0.09614 2.72% FabArray::ParallelCopy_finish() 41 0.04641 0.06611 0.0949 2.68% amrex::Copy() 193 0.06451 0.07638 0.0827 2.34% FabArray::setVal() 143 0.05952 0.06781 0.07908 2.24% Castro::initialize_advance() 10 0.06149 0.06877 0.07829 2.21% Castro::do_new_sources() 10 0.05654 0.06424 0.07698 2.18% Castro::computeTemp() 63 0.06358 0.06637 0.06849 1.94% Castro::reset_internal_energy(MultiFab) 63 0.0452 0.04703 0.04814 1.36% Castro::reset_internal_energy(Fab) 1008 0.04491 0.04673 0.04784 1.35% Castro::normalize_species() 62 0.04165 0.04295 0.04374 1.24% FabArray::ParallelCopy_nowait() 41 0.03359 0.03925 0.04123 1.17% StateDataPhysBCFunct::() 41 0.03099 0.03272 0.03598 1.02% Castro::construct_new_source() 50 0.02837 0.03099 0.03598 1.02% Castro::finalize_do_advance() 10 0.01522 0.02805 0.03595 1.02% StateData::FillBoundary(geom) 41 0.03087 0.03261 0.03585 1.01% Gravity::interpolate_monopole_grav() 21 0.02845 0.03011 0.03432 0.97% Castro::construct_new_gravity_source() 10 0.02268 0.02501 0.02989 0.85% Castro::post_init() 1 0.02438 0.02597 0.02644 0.75% Amr::writePlotFile() 2 0.02496 0.02531 0.02571 0.73% Castro::post_timestep() 10 0.01504 0.01667 0.01931 0.55% VisMF::Write(FabArray) 2 0.009308 0.01051 0.01473 0.42% Castro::Castro() 1 0.009269 0.01136 0.01399 0.40% Castro::apply_source_to_state() 20 0.009601 0.01194 0.0133 0.38% FabArray::Saxpy() 20 0.009565 0.0119 0.01325 0.37% Castro::check_for_nan() 20 0.01028 0.01118 0.01183 0.33% MultiFab::contains_nan() 20 0.01025 0.01115 0.0118 0.33% FabArray::setDomainBndry() 41 0.007002 0.009002 0.01007 0.28% Castro::initMFs() 1 0.006442 0.007826 0.009952 0.28% Castro::construct_old_source() 50 0.006182 0.008766 0.009265 0.26% Castro::construct_old_gravity_source() 10 0.006133 0.008697 0.009185 0.26% Castro::computeNewDt() 9 0.009035 0.009048 0.009062 0.26% AmrLevel::AmrLevel(dm) 1 0.005453 0.006543 0.008126 0.23% Other 260 0.02035 0.02485 0.03056 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 41 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-35-g20e6f2eadf0c) finalized