Initializing AMReX (24.07-37-g83ecf62e0b43)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-37-g83ecf62e0b43) initialized Starting run at 14:05:12 UTC on 2024-07-31. Successfully read inputs file ... Castro git describe: 24.07-35-gc7c6acad2 AMReX git describe: 24.07-37-g83ecf62e0 Microphysics git describe: 24.07-40-ga97fc2cb reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014190314 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341960477 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.349863224 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.32176982 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.323906716 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364109283 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.316754788 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.307266209 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.30875003 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308338586 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308853611 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007543651 seconds Ending run at 14:05:16 UTC on 2024-07-31. Run time = 3.44388814 Run time without initialization = 3.263524482 Average number of zones advanced per microsecond: 0.803 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.444 ... 3.444 ... 3.444 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2638 2.3080 2.3846 69.24% Gravity::make_radial_gravity() 21 0.2913 0.2977 0.3056 8.87% check_for_negative_density() 10 0.02051 0.1012 0.1436 4.17% Castro::initData() 1 0.04872 0.08513 0.1195 3.47% Castro::estTimeStep() 21 0.02327 0.06355 0.09634 2.80% FabArray::ParallelCopy_finish() 41 0.03559 0.04698 0.08566 2.49% amrex::Copy() 193 0.06266 0.07674 0.08557 2.48% FabArray::setVal() 143 0.05252 0.06434 0.06945 2.02% Castro::reset_internal_energy(Fab) 1008 0.04459 0.04624 0.04806 1.40% Castro::normalize_species() 62 0.04159 0.04308 0.0445 1.29% FabArray::ParallelCopy_nowait() 41 0.03553 0.0404 0.04185 1.22% StateData::FillBoundary(geom) 41 0.03129 0.03226 0.03409 0.99% FillPatchIterator::Initialize 41 0.02671 0.03148 0.03382 0.98% Gravity::interpolate_monopole_grav() 21 0.02744 0.0289 0.02978 0.86% Castro::construct_new_gravity_source() 10 0.02369 0.02512 0.0271 0.79% Castro::computeTemp() 63 0.01851 0.01939 0.02011 0.58% Castro::initialize_do_advance() 10 0.01173 0.01576 0.01716 0.50% FabArray::Saxpy() 20 0.01041 0.01236 0.0136 0.40% Castro::initialize_advance() 10 0.0052 0.0106 0.01353 0.39% MultiFab::contains_nan() 20 0.01019 0.01109 0.01236 0.36% Amr::writePlotFile() 2 0.007175 0.009848 0.01213 0.35% VisMF::Write(FabArray) 2 0.008506 0.009543 0.01206 0.35% Castro::construct_old_gravity_source() 10 0.006892 0.009641 0.01044 0.30% FabArray::setDomainBndry() 41 0.006797 0.009044 0.01027 0.30% Castro::initMFs() 1 0.006252 0.00676 0.008124 0.24% Castro::construct_new_source() 50 0.005925 0.006177 0.006492 0.19% main() 1 0.00366 0.003798 0.003903 0.11% Gravity::get_new_grav_vector() 11 0.00259 0.003258 0.003613 0.10% Amr::coarseTimeStep() 10 0.000799 0.001742 0.002526 0.07% Gravity::get_old_grav_vector() 10 0.001598 0.001995 0.002388 0.07% Castro::finalize_do_advance() 10 0.000388 0.0009478 0.001115 0.03% AmrLevel::FillPatch() 41 0.0006144 0.0009399 0.001035 0.03% Amr::timeStep() 10 0.0001587 0.0002191 0.0003841 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000283 0.0003026 0.0003158 0.01% Castro::do_advance_ctu() 10 0.000122 0.000158 0.000176 0.01% Castro::clean_state() 62 0.0001425 0.0001545 0.0001707 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001045 0.0001167 0.0001314 0.00% StateDataPhysBCFunct::() 41 8.887e-05 0.0001015 0.0001187 0.00% Castro::Castro() 1 5.608e-05 8.441e-05 0.0001114 0.00% FabArray::ParallelCopy() 41 7.041e-05 8.119e-05 0.0001108 0.00% Amr::FinalizeInit() 1 4.195e-06 1.942e-05 0.0001073 0.00% Castro::construct_old_source() 50 5.341e-05 7.548e-05 0.0001001 0.00% Castro::do_old_sources() 10 6.264e-05 8.73e-05 9.906e-05 0.00% FillPatchSingleLevel 41 6.337e-05 7.526e-05 8.516e-05 0.00% Castro::do_new_sources() 10 5.025e-05 6.201e-05 8.302e-05 0.00% Castro::subcycle_advance_ctu() 10 4.23e-05 5.057e-05 5.691e-05 0.00% Castro::advance() 10 3.489e-05 4.368e-05 5.463e-05 0.00% Castro::construct_old_gravity() 10 3.355e-05 3.919e-05 5.319e-05 0.00% Castro::apply_source_to_state() 20 3.444e-05 4.38e-05 4.887e-05 0.00% Amr::defBaseLevel() 1 3.35e-05 3.689e-05 4.568e-05 0.00% Castro::construct_new_gravity() 10 2.643e-05 3.413e-05 4.333e-05 0.00% Castro::expand_state() 10 1.958e-05 2.513e-05 3.556e-05 0.00% Castro::check_for_nan() 20 2.416e-05 2.666e-05 3.031e-05 0.00% Castro::post_timestep() 10 1.319e-05 1.667e-05 1.962e-05 0.00% Castro::post_init() 1 7.593e-06 8.576e-06 1.067e-05 0.00% Castro::computeNewDt() 9 7.184e-06 8.205e-06 9.141e-06 0.00% Amr::InitializeInit() 1 2.786e-06 3.456e-06 6.166e-06 0.00% Castro::computeInitialDt() 2 3.192e-06 3.446e-06 4.075e-06 0.00% Amr::init() 1 1.831e-06 2.47e-06 3.021e-06 0.00% Amr::initialInit() 1 1.437e-06 1.779e-06 2.552e-06 0.00% Other 261 0.01549 0.01783 0.01955 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.444 3.444 3.444 100.00% Amr::coarseTimeStep() 10 3.252 3.252 3.252 94.43% Amr::timeStep() 10 3.24 3.24 3.241 94.11% Castro::advance() 10 3.224 3.224 3.225 93.64% Castro::subcycle_advance_ctu() 10 3.149 3.154 3.169 92.03% Castro::do_advance_ctu() 10 3.149 3.154 3.169 92.03% Castro::construct_ctu_hydro_source() 10 2.427 2.43 2.435 70.71% Gravity::make_radial_gravity() 21 0.3073 0.3135 0.3212 9.33% Gravity::get_new_grav_vector() 11 0.2091 0.2111 0.2135 6.20% AmrLevel::FillPatch() 41 0.1812 0.1922 0.2112 6.13% Castro::construct_old_gravity() 10 0.18 0.1845 0.191 5.55% Castro::construct_new_gravity() 10 0.188 0.189 0.1908 5.54% Gravity::get_old_grav_vector() 10 0.1793 0.1838 0.1903 5.53% FillPatchIterator::Initialize 41 0.1503 0.1606 0.1866 5.42% Amr::init() 1 0.1798 0.1799 0.18 5.23% Castro::initialize_do_advance() 10 0.1511 0.1593 0.1708 4.96% Amr::initialInit() 1 0.1652 0.1656 0.1657 4.81% FillPatchIterator::FillFromLevel0() 41 0.1088 0.1201 0.1531 4.44% FillPatchSingleLevel 41 0.1086 0.12 0.153 4.44% check_for_negative_density() 10 0.02051 0.1012 0.1436 4.17% Amr::InitializeInit() 1 0.06867 0.1053 0.1396 4.05% Amr::defBaseLevel() 1 0.06867 0.1053 0.1396 4.05% Castro::expand_state() 10 0.09772 0.1072 0.1235 3.59% Castro::initData() 1 0.05225 0.08872 0.123 3.57% FabArray::ParallelCopy() 41 0.07629 0.08755 0.1213 3.52% Castro::clean_state() 62 0.1104 0.1143 0.1184 3.44% Amr::FinalizeInit() 1 0.02599 0.06033 0.09675 2.81% Castro::estTimeStep() 21 0.02327 0.06355 0.09634 2.80% Castro::do_old_sources() 10 0.08996 0.09259 0.09551 2.77% FabArray::ParallelCopy_finish() 41 0.03559 0.04698 0.08566 2.49% amrex::Copy() 193 0.06266 0.07674 0.08557 2.48% Castro::computeInitialDt() 2 0.002232 0.0366 0.073 2.12% Castro::initialize_advance() 10 0.05122 0.06695 0.07233 2.10% FabArray::setVal() 143 0.05252 0.06434 0.06945 2.02% Castro::do_new_sources() 10 0.06048 0.06403 0.06942 2.02% Castro::computeTemp() 63 0.06365 0.06593 0.06845 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04487 0.04654 0.04836 1.40% Castro::reset_internal_energy(Fab) 1008 0.04459 0.04624 0.04806 1.40% Castro::normalize_species() 62 0.04159 0.04308 0.0445 1.29% FabArray::ParallelCopy_nowait() 41 0.03562 0.04049 0.04193 1.22% StateDataPhysBCFunct::() 41 0.03141 0.03237 0.03418 0.99% StateData::FillBoundary(geom) 41 0.03129 0.03226 0.03409 0.99% Castro::construct_new_source() 50 0.02965 0.0313 0.03354 0.97% Gravity::interpolate_monopole_grav() 21 0.02744 0.0289 0.02978 0.86% Castro::construct_new_gravity_source() 10 0.02369 0.02512 0.0271 0.79% Castro::post_init() 1 0.02304 0.02335 0.0235 0.68% Castro::finalize_do_advance() 10 0.0131 0.01893 0.02322 0.67% Amr::writePlotFile() 2 0.02187 0.02199 0.02239 0.65% Castro::post_timestep() 10 0.01495 0.01564 0.01644 0.48% Castro::apply_source_to_state() 20 0.01044 0.01241 0.01365 0.40% FabArray::Saxpy() 20 0.01041 0.01236 0.0136 0.40% Castro::check_for_nan() 20 0.01022 0.01111 0.01239 0.36% MultiFab::contains_nan() 20 0.01019 0.01109 0.01236 0.36% VisMF::Write(FabArray) 2 0.008506 0.009543 0.01206 0.35% Castro::Castro() 1 0.009771 0.0106 0.01161 0.34% Castro::construct_old_source() 50 0.006946 0.009717 0.01054 0.31% Castro::construct_old_gravity_source() 10 0.006892 0.009641 0.01044 0.30% FabArray::setDomainBndry() 41 0.006797 0.009044 0.01027 0.30% Castro::computeNewDt() 9 0.00896 0.008989 0.009003 0.26% Castro::initMFs() 1 0.006252 0.00676 0.008124 0.24% Other 261 0.0253 0.02848 0.03089 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 39 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-37-g83ecf62e0b43) finalized