Initializing AMReX (24.07-37-g83ecf62e0b43)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-37-g83ecf62e0b43) initialized Starting run at 05:30:11 UTC on 2024-07-31. Successfully read inputs file ... Castro git describe: 24.07-35-gc7c6acad2 AMReX git describe: 24.07-37-g83ecf62e0 Microphysics git describe: 24.07-39-g727afa98 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01460349 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355534414 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.326935025 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.344227142 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.326784034 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.368759423 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.317229039 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308965769 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.308475411 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307794074 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308139489 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007465784 seconds Ending run at 05:30:15 UTC on 2024-07-31. Run time = 3.467634194 Run time without initialization = 3.28538684 Average number of zones advanced per microsecond: 0.798 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.467 ... 3.467 ... 3.468 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2402 2.3195 2.3970 69.12% Gravity::make_radial_gravity() 21 0.2898 0.2973 0.3115 8.98% check_for_negative_density() 10 0.03108 0.1099 0.196 5.65% Castro::initData() 1 0.04712 0.08461 0.1206 3.48% Castro::estTimeStep() 21 0.02549 0.06568 0.1067 3.08% FabArray::ParallelCopy_finish() 41 0.03507 0.04772 0.08683 2.50% amrex::Copy() 193 0.06132 0.07867 0.08663 2.50% FabArray::setVal() 143 0.0514 0.06434 0.06946 2.00% Castro::reset_internal_energy(Fab) 1008 0.04358 0.04614 0.0481 1.39% Castro::normalize_species() 62 0.04132 0.04225 0.04328 1.25% FabArray::ParallelCopy_nowait() 41 0.03473 0.03996 0.04147 1.20% StateData::FillBoundary(geom) 41 0.03003 0.03412 0.04056 1.17% FillPatchIterator::Initialize 41 0.02659 0.03124 0.03335 0.96% Gravity::interpolate_monopole_grav() 21 0.02739 0.02896 0.03018 0.87% Castro::construct_new_gravity_source() 10 0.0235 0.02499 0.02705 0.78% Castro::computeTemp() 63 0.01739 0.01908 0.02026 0.58% Castro::initialize_do_advance() 10 0.01125 0.0156 0.01729 0.50% Castro::initialize_advance() 10 0.005228 0.01047 0.0134 0.39% VisMF::Write(FabArray) 2 0.009097 0.009774 0.01317 0.38% FabArray::Saxpy() 20 0.01042 0.01222 0.01302 0.38% MultiFab::contains_nan() 20 0.0104 0.01124 0.01278 0.37% FabArray::setDomainBndry() 41 0.007149 0.009156 0.01025 0.30% Castro::construct_old_gravity_source() 10 0.006911 0.009423 0.01005 0.29% Amr::writePlotFile() 2 0.007226 0.009396 0.009923 0.29% Castro::initMFs() 1 0.006257 0.006591 0.008087 0.23% Castro::construct_new_source() 50 0.005566 0.006096 0.006444 0.19% main() 1 0.003268 0.004017 0.004369 0.13% Gravity::get_new_grav_vector() 11 0.002804 0.003255 0.00356 0.10% Amr::coarseTimeStep() 10 0.00138 0.002327 0.003084 0.09% Gravity::get_old_grav_vector() 10 0.001384 0.001949 0.002364 0.07% Castro::finalize_do_advance() 10 0.0004006 0.001024 0.001448 0.04% AmrLevel::FillPatch() 41 0.0006854 0.0009502 0.001102 0.03% Amr::timeStep() 10 0.0001641 0.0002178 0.0004103 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000285 0.0002988 0.0003103 0.01% Castro::do_advance_ctu() 10 0.0001304 0.000151 0.000185 0.01% Castro::clean_state() 62 0.0001327 0.0001496 0.0001702 0.00% FillPatchIterator::FillFromLevel0() 41 0.000104 0.000119 0.0001546 0.00% Castro::Castro() 1 5.997e-05 8.073e-05 0.0001256 0.00% StateDataPhysBCFunct::() 41 9.138e-05 0.0001035 0.0001178 0.00% Castro::do_old_sources() 10 7.133e-05 8.751e-05 0.0001097 0.00% FillPatchSingleLevel 41 6.501e-05 7.768e-05 9.519e-05 0.00% FabArray::ParallelCopy() 41 7.194e-05 7.568e-05 8.259e-05 0.00% Castro::construct_old_source() 50 4.966e-05 7.024e-05 8.048e-05 0.00% Amr::FinalizeInit() 1 4.02e-06 1.262e-05 7.099e-05 0.00% Castro::do_new_sources() 10 5.276e-05 5.921e-05 6.577e-05 0.00% Castro::apply_source_to_state() 20 4.011e-05 4.602e-05 5.433e-05 0.00% Castro::subcycle_advance_ctu() 10 4.006e-05 4.6e-05 5.351e-05 0.00% Castro::construct_old_gravity() 10 3.362e-05 3.923e-05 4.889e-05 0.00% Castro::advance() 10 3.395e-05 4.35e-05 4.688e-05 0.00% Amr::defBaseLevel() 1 3.421e-05 4.06e-05 4.68e-05 0.00% Castro::construct_new_gravity() 10 2.759e-05 3.362e-05 4.016e-05 0.00% Castro::check_for_nan() 20 2.375e-05 2.704e-05 2.984e-05 0.00% Castro::expand_state() 10 1.703e-05 2.206e-05 2.574e-05 0.00% Castro::post_timestep() 10 1.471e-05 1.74e-05 2.052e-05 0.00% Castro::post_init() 1 7.596e-06 8.779e-06 1.114e-05 0.00% Castro::computeNewDt() 9 6.487e-06 8.006e-06 9.278e-06 0.00% Castro::computeInitialDt() 2 3.136e-06 3.723e-06 5.594e-06 0.00% Amr::InitializeInit() 1 2.628e-06 3.283e-06 5.333e-06 0.00% Amr::init() 1 1.627e-06 2.214e-06 3.283e-06 0.00% Amr::initialInit() 1 1.309e-06 1.881e-06 2.535e-06 0.00% Other 261 0.01465 0.01755 0.01925 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.467 3.467 3.468 100.00% Amr::coarseTimeStep() 10 3.274 3.274 3.274 94.40% Amr::timeStep() 10 3.26 3.261 3.262 94.07% Castro::advance() 10 3.245 3.246 3.246 93.61% Castro::subcycle_advance_ctu() 10 3.172 3.176 3.192 92.04% Castro::do_advance_ctu() 10 3.172 3.176 3.191 92.04% Castro::construct_ctu_hydro_source() 10 2.44 2.45 2.458 70.87% Gravity::make_radial_gravity() 21 0.3064 0.3135 0.3252 9.38% Gravity::get_new_grav_vector() 11 0.2091 0.2114 0.213 6.14% AmrLevel::FillPatch() 41 0.1815 0.1955 0.2094 6.04% check_for_negative_density() 10 0.03108 0.1099 0.196 5.65% Castro::construct_old_gravity() 10 0.1803 0.1845 0.1942 5.60% Gravity::get_old_grav_vector() 10 0.1796 0.1839 0.1936 5.58% Castro::construct_new_gravity() 10 0.1875 0.1894 0.1906 5.50% FillPatchIterator::Initialize 41 0.1502 0.1626 0.1858 5.36% Amr::init() 1 0.1817 0.1818 0.1819 5.24% Amr::initialInit() 1 0.167 0.1675 0.1677 4.84% Castro::initialize_do_advance() 10 0.1554 0.1598 0.1653 4.77% FillPatchIterator::FillFromLevel0() 41 0.1111 0.1223 0.1521 4.38% FillPatchSingleLevel 41 0.111 0.1221 0.1519 4.38% Amr::InitializeInit() 1 0.06685 0.1048 0.1416 4.08% Amr::defBaseLevel() 1 0.06685 0.1048 0.1416 4.08% Castro::initData() 1 0.05118 0.08842 0.1241 3.58% FabArray::ParallelCopy() 41 0.07627 0.08784 0.1217 3.51% Castro::expand_state() 10 0.1014 0.108 0.1187 3.42% Castro::clean_state() 62 0.1081 0.1129 0.1175 3.39% Castro::estTimeStep() 21 0.02549 0.06568 0.1067 3.08% Castro::do_old_sources() 10 0.08876 0.09413 0.1018 2.94% Amr::FinalizeInit() 1 0.026 0.06276 0.1008 2.91% FabArray::ParallelCopy_finish() 41 0.03507 0.04772 0.08683 2.50% amrex::Copy() 193 0.06132 0.07867 0.08663 2.50% Castro::computeInitialDt() 2 0.002195 0.03904 0.07699 2.22% Castro::initialize_advance() 10 0.0501 0.06646 0.07066 2.04% FabArray::setVal() 143 0.0514 0.06434 0.06946 2.00% Castro::do_new_sources() 10 0.0596 0.06325 0.06901 1.99% Castro::computeTemp() 63 0.06125 0.06551 0.06865 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04386 0.04644 0.04841 1.40% Castro::reset_internal_energy(Fab) 1008 0.04358 0.04614 0.0481 1.39% Castro::normalize_species() 62 0.04132 0.04225 0.04328 1.25% FabArray::ParallelCopy_nowait() 41 0.03483 0.04005 0.04155 1.20% StateDataPhysBCFunct::() 41 0.03013 0.03422 0.04067 1.17% StateData::FillBoundary(geom) 41 0.03003 0.03412 0.04056 1.17% Castro::construct_new_source() 50 0.02963 0.03109 0.03334 0.96% Gravity::interpolate_monopole_grav() 21 0.02739 0.02896 0.03018 0.87% Castro::construct_new_gravity_source() 10 0.0235 0.02499 0.02705 0.78% Castro::post_init() 1 0.02271 0.02326 0.02343 0.68% Castro::finalize_do_advance() 10 0.01327 0.01862 0.02271 0.65% Amr::writePlotFile() 2 0.02173 0.02184 0.02229 0.64% Castro::post_timestep() 10 0.01476 0.0154 0.01606 0.46% VisMF::Write(FabArray) 2 0.009097 0.009774 0.01317 0.38% Castro::apply_source_to_state() 20 0.01046 0.01227 0.01308 0.38% FabArray::Saxpy() 20 0.01042 0.01222 0.01302 0.38% Castro::check_for_nan() 20 0.01043 0.01127 0.0128 0.37% MultiFab::contains_nan() 20 0.0104 0.01124 0.01278 0.37% Castro::Castro() 1 0.01023 0.01066 0.01163 0.34% FabArray::setDomainBndry() 41 0.007149 0.009156 0.01025 0.30% Castro::construct_old_source() 50 0.006961 0.009493 0.01013 0.29% Castro::construct_old_gravity_source() 10 0.006911 0.009423 0.01005 0.29% Castro::computeNewDt() 9 0.009046 0.009064 0.009078 0.26% Castro::initMFs() 1 0.006257 0.006591 0.008087 0.23% Other 261 0.02436 0.02794 0.03047 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 40 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-37-g83ecf62e0b43) finalized