Initializing AMReX (24.07-37-g83ecf62e0b43)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.07-37-g83ecf62e0b43) initialized Starting run at 05:22:36 UTC on 2024-08-01. Successfully read inputs file ... Castro git describe: 24.07-35-gc7c6acad2 AMReX git describe: 24.07-37-g83ecf62e0 Microphysics git describe: 24.07-40-g8924bd8d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014052631 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.35183204 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.348935698 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.327744705 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.32710862 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.378462271 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.316913102 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.307284997 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.30749876 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308135382 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308575328 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007528658 seconds Ending run at 05:22:40 UTC on 2024-08-01. Run time = 3.480248612 Run time without initialization = 3.294426358 Average number of zones advanced per microsecond: 0.796 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.48 ... 3.48 ... 3.48 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2544 2.3128 2.3893 68.65% Gravity::make_radial_gravity() 21 0.2877 0.2969 0.3141 9.02% check_for_negative_density() 10 0.02996 0.1097 0.1738 4.99% Castro::initData() 1 0.04768 0.08798 0.1233 3.54% Castro::estTimeStep() 21 0.02703 0.06638 0.1076 3.09% FabArray::ParallelCopy_finish() 41 0.04277 0.05366 0.09588 2.75% amrex::Copy() 193 0.06091 0.07799 0.08524 2.45% FabArray::setVal() 143 0.05106 0.06469 0.06778 1.95% Castro::normalize_species() 62 0.04195 0.04885 0.05665 1.63% Castro::reset_internal_energy(Fab) 1008 0.04417 0.04701 0.05382 1.55% FabArray::ParallelCopy_nowait() 41 0.03618 0.04045 0.04284 1.23% StateData::FillBoundary(geom) 41 0.0301 0.03255 0.03527 1.01% FillPatchIterator::Initialize 41 0.02708 0.03114 0.03302 0.95% Gravity::interpolate_monopole_grav() 21 0.02736 0.02882 0.02974 0.85% Castro::construct_new_gravity_source() 10 0.02372 0.02518 0.02776 0.80% Castro::computeTemp() 63 0.01917 0.02005 0.02138 0.61% Castro::initialize_do_advance() 10 0.01144 0.0157 0.01674 0.48% Castro::construct_old_gravity_source() 10 0.007019 0.01023 0.01596 0.46% FabArray::Saxpy() 20 0.01046 0.01242 0.01558 0.45% Castro::initialize_advance() 10 0.005312 0.01072 0.0134 0.39% VisMF::Write(FabArray) 2 0.009117 0.00967 0.0127 0.36% MultiFab::contains_nan() 20 0.01023 0.0112 0.01238 0.36% FabArray::setDomainBndry() 41 0.007405 0.008651 0.01003 0.29% Amr::writePlotFile() 2 0.007191 0.009051 0.009421 0.27% Castro::initMFs() 1 0.006352 0.007051 0.007188 0.21% Castro::construct_new_source() 50 0.005712 0.006307 0.006534 0.19% Amr::coarseTimeStep() 10 0.002804 0.003985 0.005233 0.15% main() 1 0.003775 0.003899 0.004081 0.12% Gravity::get_new_grav_vector() 11 0.002738 0.003097 0.003475 0.10% Gravity::get_old_grav_vector() 10 0.001455 0.002017 0.002568 0.07% Castro::finalize_do_advance() 10 0.0004159 0.0009908 0.00116 0.03% AmrLevel::FillPatch() 41 0.0006716 0.0007842 0.0008645 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002943 0.0003145 0.0003831 0.01% Amr::timeStep() 10 0.0001703 0.0002137 0.0003756 0.01% Castro::do_advance_ctu() 10 0.0001278 0.0001493 0.0001719 0.00% Castro::clean_state() 62 0.0001385 0.0001537 0.0001684 0.00% Castro::construct_old_source() 50 5.409e-05 8.174e-05 0.0001361 0.00% FillPatchIterator::FillFromLevel0() 41 0.000103 0.0001161 0.0001321 0.00% Castro::Castro() 1 6.686e-05 9.706e-05 0.0001223 0.00% StateDataPhysBCFunct::() 41 9.722e-05 0.0001066 0.0001189 0.00% Castro::do_old_sources() 10 7.227e-05 9.296e-05 0.0001162 0.00% FabArray::ParallelCopy() 41 7.15e-05 7.786e-05 8.728e-05 0.00% FillPatchSingleLevel 41 6.858e-05 7.366e-05 7.833e-05 0.00% Castro::do_new_sources() 10 5.017e-05 5.909e-05 7.191e-05 0.00% Castro::advance() 10 3.768e-05 5.087e-05 6.885e-05 0.00% Amr::FinalizeInit() 1 3.917e-06 1.232e-05 6.82e-05 0.00% Castro::apply_source_to_state() 20 3.993e-05 4.612e-05 5.6e-05 0.00% Castro::subcycle_advance_ctu() 10 4.146e-05 4.872e-05 5.595e-05 0.00% Castro::construct_old_gravity() 10 3.156e-05 3.869e-05 4.825e-05 0.00% Amr::defBaseLevel() 1 3.826e-05 4.182e-05 4.672e-05 0.00% Castro::construct_new_gravity() 10 3.117e-05 3.405e-05 3.995e-05 0.00% Castro::check_for_nan() 20 2.414e-05 2.822e-05 3.105e-05 0.00% Castro::expand_state() 10 1.91e-05 2.402e-05 2.872e-05 0.00% Castro::post_timestep() 10 1.374e-05 1.596e-05 1.852e-05 0.00% Castro::post_init() 1 8.154e-06 1.105e-05 1.602e-05 0.00% Castro::computeNewDt() 9 6.612e-06 7.769e-06 8.761e-06 0.00% Amr::init() 1 1.701e-06 2.759e-06 7.183e-06 0.00% Amr::InitializeInit() 1 2.642e-06 3.37e-06 6.27e-06 0.00% Castro::computeInitialDt() 2 2.964e-06 3.685e-06 5.389e-06 0.00% Amr::initialInit() 1 1.311e-06 1.771e-06 2.759e-06 0.00% Other 261 0.01473 0.01831 0.01976 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.48 3.48 3.48 100.00% Amr::coarseTimeStep() 10 3.283 3.283 3.283 94.33% Amr::timeStep() 10 3.267 3.269 3.27 93.95% Castro::advance() 10 3.251 3.252 3.252 93.45% Castro::subcycle_advance_ctu() 10 3.176 3.18 3.199 91.91% Castro::do_advance_ctu() 10 3.176 3.18 3.199 91.91% Castro::construct_ctu_hydro_source() 10 2.441 2.444 2.449 70.37% Gravity::make_radial_gravity() 21 0.3031 0.3123 0.3276 9.41% AmrLevel::FillPatch() 41 0.1871 0.1989 0.2201 6.32% Gravity::get_new_grav_vector() 11 0.2054 0.2073 0.2088 6.00% Castro::construct_old_gravity() 10 0.1809 0.1866 0.1985 5.70% Gravity::get_old_grav_vector() 10 0.1802 0.1859 0.1979 5.69% FillPatchIterator::Initialize 41 0.1553 0.1669 0.1971 5.66% Castro::construct_new_gravity() 10 0.1829 0.1851 0.1864 5.36% Amr::init() 1 0.1852 0.1854 0.1854 5.33% check_for_negative_density() 10 0.02996 0.1097 0.1738 4.99% Amr::initialInit() 1 0.171 0.1716 0.1717 4.93% Castro::initialize_do_advance() 10 0.1546 0.1589 0.1653 4.75% FillPatchIterator::FillFromLevel0() 41 0.1163 0.1271 0.1626 4.67% FillPatchSingleLevel 41 0.1162 0.127 0.1625 4.67% Amr::InitializeInit() 1 0.06971 0.1094 0.1454 4.18% Amr::defBaseLevel() 1 0.0697 0.1094 0.1454 4.18% FabArray::ParallelCopy() 41 0.08464 0.09428 0.1322 3.80% Castro::initData() 1 0.05174 0.0919 0.1272 3.66% Castro::clean_state() 62 0.1133 0.1214 0.1259 3.62% Castro::expand_state() 10 0.1004 0.1065 0.1188 3.41% Castro::do_old_sources() 10 0.09676 0.1035 0.1078 3.10% Castro::estTimeStep() 21 0.02703 0.06638 0.1076 3.09% Amr::FinalizeInit() 1 0.02626 0.06217 0.102 2.93% FabArray::ParallelCopy_finish() 41 0.04277 0.05366 0.09588 2.75% amrex::Copy() 193 0.06091 0.07799 0.08524 2.45% Castro::computeInitialDt() 2 0.002251 0.03824 0.078 2.24% Castro::computeTemp() 63 0.0638 0.06737 0.07558 2.17% Castro::initialize_advance() 10 0.04927 0.06875 0.07282 2.09% Castro::do_new_sources() 10 0.05967 0.06478 0.0697 2.00% FabArray::setVal() 143 0.05106 0.06469 0.06778 1.95% Castro::normalize_species() 62 0.04195 0.04885 0.05665 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04447 0.04732 0.05421 1.56% Castro::reset_internal_energy(Fab) 1008 0.04417 0.04701 0.05382 1.55% FabArray::ParallelCopy_nowait() 41 0.03629 0.04054 0.04293 1.23% StateDataPhysBCFunct::() 41 0.0302 0.03266 0.03537 1.02% StateData::FillBoundary(geom) 41 0.0301 0.03255 0.03527 1.01% Castro::construct_new_source() 50 0.02962 0.03149 0.0343 0.99% Gravity::interpolate_monopole_grav() 21 0.02736 0.02882 0.02974 0.85% Castro::construct_new_gravity_source() 10 0.02372 0.02518 0.02776 0.80% Castro::finalize_do_advance() 10 0.01398 0.02 0.02545 0.73% Castro::post_init() 1 0.02292 0.02336 0.02361 0.68% Amr::writePlotFile() 2 0.02131 0.0214 0.02181 0.63% Castro::post_timestep() 10 0.01573 0.01656 0.01791 0.51% Castro::construct_old_source() 50 0.007073 0.01031 0.01609 0.46% Castro::construct_old_gravity_source() 10 0.007019 0.01023 0.01596 0.46% Castro::apply_source_to_state() 20 0.0105 0.01246 0.01563 0.45% FabArray::Saxpy() 20 0.01046 0.01242 0.01558 0.45% VisMF::Write(FabArray) 2 0.009117 0.00967 0.0127 0.36% Castro::check_for_nan() 20 0.01025 0.01122 0.01241 0.36% MultiFab::contains_nan() 20 0.01023 0.0112 0.01238 0.36% Castro::Castro() 1 0.009037 0.01141 0.01199 0.34% FabArray::setDomainBndry() 41 0.007405 0.008651 0.01003 0.29% Castro::computeNewDt() 9 0.009138 0.009153 0.009167 0.26% Castro::initMFs() 1 0.006352 0.007051 0.007188 0.21% Other 261 0.02466 0.02937 0.03154 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 37 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.07-37-g83ecf62e0b43) finalized