Initializing AMReX (24.08-2-g443404813dd6)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-2-g443404813dd6) initialized Starting run at 05:39:03 UTC on 2024-08-02. Successfully read inputs file ... Castro git describe: 24.08 AMReX git describe: 24.08-2-g443404813 Microphysics git describe: 24.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014550361 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.34349409 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.346959841 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325670566 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.32520065 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.374953277 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.316953085 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308718018 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.309926588 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.309264531 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308890095 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007546917 seconds Ending run at 05:39:07 UTC on 2024-08-02. Run time = 3.477032457 Run time without initialization = 3.282749548 Average number of zones advanced per microsecond: 0.799 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.476 ... 3.477 ... 3.477 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0914 2.2921 2.3540 67.70% Gravity::make_radial_gravity() 21 0.2944 0.3013 0.3219 9.26% check_for_negative_density() 10 0.03944 0.1031 0.3079 8.86% Castro::initData() 1 0.04733 0.08809 0.1272 3.66% Castro::estTimeStep() 21 0.02401 0.07114 0.1149 3.30% FabArray::ParallelCopy_finish() 41 0.0463 0.06421 0.1065 3.06% amrex::Copy() 193 0.06423 0.08272 0.09661 2.78% FabArray::setVal() 143 0.05218 0.06595 0.07478 2.15% Castro::reset_internal_energy(Fab) 1008 0.04555 0.04694 0.04926 1.42% Castro::normalize_species() 62 0.04134 0.04198 0.04406 1.27% FabArray::ParallelCopy_nowait() 41 0.03513 0.04076 0.04239 1.22% StateData::FillBoundary(geom) 41 0.02982 0.03332 0.03631 1.04% FillPatchIterator::Initialize 41 0.0273 0.03311 0.03626 1.04% Gravity::interpolate_monopole_grav() 21 0.02739 0.02967 0.031 0.89% Castro::construct_new_gravity_source() 10 0.0229 0.02459 0.02715 0.78% Castro::computeTemp() 63 0.01902 0.01959 0.02022 0.58% Castro::initialize_do_advance() 10 0.01121 0.01639 0.01785 0.51% FabArray::setDomainBndry() 41 0.009221 0.01228 0.01378 0.40% Castro::initialize_advance() 10 0.005334 0.0105 0.01351 0.39% VisMF::Write(FabArray) 2 0.009288 0.009878 0.01305 0.38% FabArray::Saxpy() 20 0.01064 0.01193 0.01278 0.37% MultiFab::contains_nan() 20 0.009766 0.01047 0.01178 0.34% Castro::initMFs() 1 0.006549 0.007862 0.01056 0.30% Amr::writePlotFile() 2 0.007443 0.009394 0.009789 0.28% Castro::construct_old_gravity_source() 10 0.006478 0.008676 0.009225 0.27% Castro::construct_new_source() 50 0.005575 0.006116 0.006263 0.18% main() 1 0.003711 0.004118 0.004418 0.13% Gravity::get_new_grav_vector() 11 0.002718 0.003543 0.003906 0.11% Gravity::get_old_grav_vector() 10 0.001497 0.002088 0.002644 0.08% Amr::coarseTimeStep() 10 0.001136 0.00224 0.002618 0.08% Castro::finalize_do_advance() 10 0.0004394 0.001022 0.001496 0.04% AmrLevel::FillPatch() 41 0.0007634 0.0009365 0.001042 0.03% Amr::timeStep() 10 0.0001693 0.0002249 0.0004646 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002911 0.0003092 0.000332 0.01% Castro::do_advance_ctu() 10 0.0001455 0.0001584 0.0002015 0.01% Castro::clean_state() 62 0.0001514 0.0001601 0.0001826 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001034 0.0001154 0.0001389 0.00% StateDataPhysBCFunct::() 41 9.286e-05 0.0001014 0.0001157 0.00% Castro::do_old_sources() 10 7.475e-05 8.591e-05 0.000102 0.00% FabArray::ParallelCopy() 41 8.274e-05 8.975e-05 9.73e-05 0.00% Amr::FinalizeInit() 1 4.492e-06 1.688e-05 9.566e-05 0.00% FillPatchSingleLevel 41 7.081e-05 8.153e-05 9.405e-05 0.00% Castro::construct_old_source() 50 5.94e-05 7.21e-05 9.05e-05 0.00% Castro::Castro() 1 4.625e-05 6.729e-05 8.586e-05 0.00% Castro::do_new_sources() 10 5.488e-05 6.204e-05 6.975e-05 0.00% Castro::subcycle_advance_ctu() 10 3.523e-05 4.78e-05 6.92e-05 0.00% Amr::defBaseLevel() 1 4e-05 5.078e-05 5.804e-05 0.00% Castro::advance() 10 3.792e-05 4.299e-05 4.941e-05 0.00% Castro::construct_new_gravity() 10 3.145e-05 3.6e-05 4.505e-05 0.00% Castro::apply_source_to_state() 20 3.79e-05 4.266e-05 4.504e-05 0.00% Castro::construct_old_gravity() 10 3.433e-05 3.944e-05 4.247e-05 0.00% Castro::expand_state() 10 2.062e-05 2.584e-05 3.038e-05 0.00% Castro::check_for_nan() 20 2.238e-05 2.468e-05 2.916e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.56e-06 1.352e-05 2.354e-05 0.00% Castro::post_timestep() 10 1.266e-05 1.631e-05 1.949e-05 0.00% Castro::post_init() 1 7.881e-06 1.05e-05 1.553e-05 0.00% Castro::computeNewDt() 9 6.901e-06 8.106e-06 1.044e-05 0.00% Amr::initialInit() 1 1.614e-06 2.921e-06 9.627e-06 0.00% Castro::computeInitialDt() 2 3.352e-06 4.257e-06 5.893e-06 0.00% Amr::InitializeInit() 1 2.686e-06 3.737e-06 5.742e-06 0.00% Amr::init() 1 1.591e-06 2.214e-06 3.736e-06 0.00% Other 260 0.01472 0.01893 0.0226 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.476 3.477 3.477 100.00% Amr::coarseTimeStep() 10 3.271 3.271 3.271 94.07% Amr::timeStep() 10 3.258 3.259 3.26 93.75% Castro::advance() 10 3.242 3.243 3.243 93.27% Castro::subcycle_advance_ctu() 10 3.162 3.172 3.19 91.73% Castro::do_advance_ctu() 10 3.161 3.172 3.19 91.73% Castro::construct_ctu_hydro_source() 10 2.412 2.415 2.419 69.58% Gravity::make_radial_gravity() 21 0.3114 0.318 0.3351 9.64% check_for_negative_density() 10 0.03944 0.1031 0.3079 8.86% AmrLevel::FillPatch() 41 0.1985 0.2165 0.2318 6.67% Castro::construct_old_gravity() 10 0.1931 0.1985 0.2123 6.11% Gravity::get_old_grav_vector() 10 0.1923 0.1979 0.2117 6.09% FillPatchIterator::Initialize 41 0.1682 0.1842 0.2085 6.00% Gravity::get_new_grav_vector() 11 0.2052 0.2071 0.2081 5.98% Amr::init() 1 0.1937 0.1938 0.1939 5.58% Castro::construct_new_gravity() 10 0.1836 0.1848 0.1855 5.34% Amr::initialInit() 1 0.179 0.1796 0.1798 5.17% Castro::initialize_do_advance() 10 0.167 0.1742 0.1797 5.17% FillPatchIterator::FillFromLevel0() 41 0.1242 0.1388 0.172 4.95% FillPatchSingleLevel 41 0.1241 0.1387 0.1718 4.94% Amr::InitializeInit() 1 0.06703 0.1098 0.1532 4.41% Amr::defBaseLevel() 1 0.06703 0.1098 0.1532 4.41% FabArray::ParallelCopy() 41 0.08845 0.1052 0.1418 4.08% Castro::expand_state() 10 0.1133 0.1214 0.1314 3.78% Castro::initData() 1 0.05087 0.09177 0.1309 3.77% Castro::clean_state() 62 0.1119 0.1141 0.1195 3.44% Castro::estTimeStep() 21 0.02401 0.07114 0.1149 3.30% Amr::FinalizeInit() 1 0.02641 0.06976 0.1127 3.24% FabArray::ParallelCopy_finish() 41 0.0463 0.06421 0.1065 3.06% Castro::do_old_sources() 10 0.09431 0.09938 0.1054 3.03% amrex::Copy() 193 0.06423 0.08272 0.09661 2.78% Castro::computeInitialDt() 2 0.002408 0.04586 0.08871 2.55% Castro::initialize_advance() 10 0.04929 0.06754 0.07805 2.24% FabArray::setVal() 143 0.05218 0.06595 0.07478 2.15% Castro::computeTemp() 63 0.06543 0.06685 0.06981 2.01% Castro::do_new_sources() 10 0.05733 0.06301 0.06833 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04588 0.04725 0.04959 1.43% Castro::reset_internal_energy(Fab) 1008 0.04555 0.04694 0.04926 1.42% Castro::normalize_species() 62 0.04134 0.04198 0.04406 1.27% FabArray::ParallelCopy_nowait() 41 0.03523 0.04085 0.04248 1.22% StateDataPhysBCFunct::() 41 0.02993 0.03342 0.03642 1.05% StateData::FillBoundary(geom) 41 0.02982 0.03332 0.03631 1.04% Castro::construct_new_source() 50 0.02847 0.03071 0.03335 0.96% Gravity::interpolate_monopole_grav() 21 0.02739 0.02967 0.031 0.89% Castro::construct_new_gravity_source() 10 0.0229 0.02459 0.02715 0.78% Castro::post_init() 1 0.02291 0.02343 0.0236 0.68% Castro::finalize_do_advance() 10 0.01299 0.01748 0.02315 0.67% Amr::writePlotFile() 2 0.0218 0.02189 0.02235 0.64% Castro::post_timestep() 10 0.01546 0.0157 0.01635 0.47% Castro::Castro() 1 0.009875 0.01148 0.01485 0.43% FabArray::setDomainBndry() 41 0.009221 0.01228 0.01378 0.40% VisMF::Write(FabArray) 2 0.009288 0.009878 0.01305 0.38% Castro::apply_source_to_state() 20 0.01069 0.01197 0.01283 0.37% FabArray::Saxpy() 20 0.01064 0.01193 0.01278 0.37% Castro::check_for_nan() 20 0.009792 0.01049 0.01181 0.34% MultiFab::contains_nan() 20 0.009766 0.01047 0.01178 0.34% Castro::initMFs() 1 0.006549 0.007862 0.01056 0.30% Castro::construct_old_source() 50 0.006538 0.008748 0.009297 0.27% Castro::construct_old_gravity_source() 10 0.006478 0.008676 0.009225 0.27% Castro::computeNewDt() 9 0.008811 0.008831 0.008854 0.25% AmrLevel::AmrLevel(dm) 1 0.005293 0.006377 0.008245 0.24% Other 260 0.01935 0.0239 0.02787 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 43 B 59 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-2-g443404813dd6) finalized