Initializing AMReX (24.08-3-gc09da9977004)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-3-gc09da9977004) initialized Starting run at 05:38:15 UTC on 2024-08-05. Successfully read inputs file ... Castro git describe: 24.08 AMReX git describe: 24.08-3-gc09da9977 Microphysics git describe: 24.08 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014956826 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346699289 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.343168971 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.377220427 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.346785739 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.37476238 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306720166 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.304379337 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.30579172 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.305616633 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308106743 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007568684 seconds Ending run at 05:38:19 UTC on 2024-08-05. Run time = 3.542506466 Run time without initialization = 3.331606423 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.542 ... 3.542 ... 3.543 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2484 2.3115 2.3634 66.72% Gravity::make_radial_gravity() 21 0.3002 0.3187 0.3367 9.50% check_for_negative_density() 10 0.05497 0.1081 0.1747 4.93% Castro::initData() 1 0.04777 0.09043 0.144 4.06% Castro::estTimeStep() 21 0.03708 0.09061 0.1355 3.82% FabArray::ParallelCopy_finish() 41 0.04905 0.07126 0.1098 3.10% amrex::Copy() 193 0.06003 0.07833 0.09306 2.63% FabArray::setVal() 143 0.05842 0.06557 0.07737 2.18% Castro::reset_internal_energy(Fab) 1008 0.04518 0.04665 0.04884 1.38% FabArray::ParallelCopy_nowait() 41 0.03236 0.0414 0.04787 1.35% Castro::normalize_species() 62 0.04128 0.04221 0.04286 1.21% StateData::FillBoundary(geom) 41 0.03107 0.03356 0.03868 1.09% Gravity::interpolate_monopole_grav() 21 0.02818 0.03032 0.03729 1.05% FillPatchIterator::Initialize 41 0.02715 0.03232 0.03533 1.00% Castro::construct_new_gravity_source() 10 0.02277 0.02484 0.02851 0.80% Castro::computeTemp() 63 0.02038 0.02083 0.02175 0.61% Castro::initialize_do_advance() 10 0.0125 0.01622 0.01987 0.56% MultiFab::contains_nan() 20 0.0102 0.01134 0.01449 0.41% Amr::writePlotFile() 2 0.007544 0.01068 0.01264 0.36% Castro::initialize_advance() 10 0.005337 0.009884 0.01256 0.35% VisMF::Write(FabArray) 2 0.008499 0.009646 0.01255 0.35% FabArray::Saxpy() 20 0.01083 0.01168 0.01252 0.35% FabArray::setDomainBndry() 41 0.00687 0.009342 0.01035 0.29% Castro::construct_old_gravity_source() 10 0.006165 0.008519 0.009163 0.26% Castro::initMFs() 1 0.006707 0.007248 0.007893 0.22% Castro::construct_new_source() 50 0.005276 0.005792 0.005902 0.17% main() 1 0.003891 0.004092 0.004242 0.12% Gravity::get_new_grav_vector() 11 0.002798 0.003549 0.003854 0.11% Amr::coarseTimeStep() 10 0.001236 0.002483 0.003191 0.09% Gravity::get_old_grav_vector() 10 0.001662 0.00203 0.002689 0.08% Castro::finalize_do_advance() 10 0.0006661 0.0009451 0.001087 0.03% AmrLevel::FillPatch() 41 0.0007042 0.0008896 0.001056 0.03% Amr::timeStep() 10 0.0001734 0.0002144 0.0003875 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002608 0.0002746 0.0003001 0.01% Castro::clean_state() 62 0.0001365 0.0001563 0.0001784 0.01% Castro::do_advance_ctu() 10 0.0001209 0.0001492 0.0001674 0.00% StateDataPhysBCFunct::() 41 9.62e-05 0.0001171 0.0001407 0.00% FillPatchIterator::FillFromLevel0() 41 8.954e-05 0.0001059 0.0001364 0.00% Castro::do_old_sources() 10 6.137e-05 8.616e-05 0.0001006 0.00% FabArray::ParallelCopy() 41 7.837e-05 8.615e-05 9.443e-05 0.00% Amr::FinalizeInit() 1 3.685e-06 1.515e-05 9.041e-05 0.00% Castro::construct_old_source() 50 4.812e-05 7.279e-05 8.94e-05 0.00% Castro::Castro() 1 5.636e-05 7.572e-05 8.622e-05 0.00% FillPatchSingleLevel 41 6.789e-05 7.669e-05 8.243e-05 0.00% Castro::do_new_sources() 10 5.038e-05 5.853e-05 6.433e-05 0.00% Castro::advance() 10 3.72e-05 4.65e-05 6.014e-05 0.00% Castro::subcycle_advance_ctu() 10 3.61e-05 4.729e-05 5.313e-05 0.00% Castro::post_timestep() 10 1.556e-05 2.242e-05 4.815e-05 0.00% Amr::defBaseLevel() 1 2.961e-05 4.05e-05 4.697e-05 0.00% Castro::apply_source_to_state() 20 3.722e-05 4.185e-05 4.679e-05 0.00% Castro::construct_old_gravity() 10 3.047e-05 3.766e-05 4.388e-05 0.00% Castro::construct_new_gravity() 10 2.896e-05 3.451e-05 4.088e-05 0.00% Castro::check_for_nan() 20 2.275e-05 2.548e-05 3.237e-05 0.00% Castro::expand_state() 10 1.872e-05 2.27e-05 2.732e-05 0.00% Castro::post_init() 1 8.189e-06 9.993e-06 1.354e-05 0.00% Castro::computeNewDt() 9 7.893e-06 8.307e-06 8.841e-06 0.00% Castro::computeInitialDt() 2 3.629e-06 4.311e-06 5.898e-06 0.00% Amr::InitializeInit() 1 2.635e-06 3.203e-06 5.182e-06 0.00% Amr::init() 1 1.686e-06 2.13e-06 2.768e-06 0.00% Amr::initialInit() 1 1.24e-06 1.535e-06 2.086e-06 0.00% Other 261 0.01699 0.01951 0.02148 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.542 3.542 3.543 100.00% Amr::coarseTimeStep() 10 3.32 3.32 3.32 93.71% Amr::timeStep() 10 3.306 3.307 3.308 93.38% Castro::advance() 10 3.29 3.29 3.291 92.90% Castro::subcycle_advance_ctu() 10 3.21 3.22 3.226 91.07% Castro::do_advance_ctu() 10 3.21 3.22 3.226 91.07% Castro::construct_ctu_hydro_source() 10 2.439 2.441 2.444 68.99% Gravity::make_radial_gravity() 21 0.3163 0.3348 0.3489 9.85% AmrLevel::FillPatch() 41 0.199 0.2218 0.2336 6.59% Gravity::get_new_grav_vector() 11 0.2243 0.2259 0.2281 6.44% Castro::construct_old_gravity() 10 0.189 0.205 0.217 6.13% Gravity::get_old_grav_vector() 10 0.1879 0.2041 0.216 6.10% Amr::init() 1 0.2104 0.2105 0.2105 5.94% FillPatchIterator::Initialize 41 0.1666 0.1884 0.2077 5.86% Castro::construct_new_gravity() 10 0.1992 0.2005 0.2027 5.72% Amr::initialInit() 1 0.1951 0.1953 0.1956 5.52% Castro::initialize_do_advance() 10 0.1643 0.1753 0.1932 5.45% check_for_negative_density() 10 0.05497 0.1081 0.1747 4.93% FillPatchIterator::FillFromLevel0() 41 0.1216 0.1467 0.1737 4.90% FillPatchSingleLevel 41 0.1215 0.1466 0.1736 4.90% Amr::InitializeInit() 1 0.06927 0.1118 0.1661 4.69% Amr::defBaseLevel() 1 0.06927 0.1118 0.1661 4.69% Castro::initData() 1 0.05155 0.09428 0.1482 4.18% FabArray::ParallelCopy() 41 0.08875 0.1128 0.1423 4.02% Castro::expand_state() 10 0.1076 0.122 0.1371 3.87% Castro::estTimeStep() 21 0.03708 0.09061 0.1355 3.82% Amr::FinalizeInit() 1 0.0295 0.08349 0.1259 3.55% Castro::clean_state() 62 0.1134 0.1164 0.1203 3.40% FabArray::ParallelCopy_finish() 41 0.04905 0.07126 0.1098 3.10% Castro::computeInitialDt() 2 0.002551 0.05683 0.0994 2.81% Castro::do_old_sources() 10 0.09121 0.09373 0.09598 2.71% amrex::Copy() 193 0.06003 0.07833 0.09306 2.63% FabArray::setVal() 143 0.05842 0.06557 0.07737 2.18% Castro::initialize_advance() 10 0.06041 0.0666 0.07687 2.17% Castro::do_new_sources() 10 0.05906 0.06462 0.07542 2.13% Castro::computeTemp() 63 0.06582 0.06775 0.07089 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04544 0.04692 0.04914 1.39% Castro::reset_internal_energy(Fab) 1008 0.04518 0.04665 0.04884 1.38% FabArray::ParallelCopy_nowait() 41 0.03245 0.04149 0.04798 1.35% Castro::normalize_species() 62 0.04128 0.04221 0.04286 1.21% StateDataPhysBCFunct::() 41 0.03121 0.03368 0.03881 1.10% StateData::FillBoundary(geom) 41 0.03107 0.03356 0.03868 1.09% Gravity::interpolate_monopole_grav() 21 0.02818 0.03032 0.03729 1.05% Castro::construct_new_source() 50 0.0286 0.03063 0.03437 0.97% Castro::finalize_do_advance() 10 0.01444 0.02531 0.03193 0.90% Castro::construct_new_gravity_source() 10 0.02277 0.02484 0.02851 0.80% Castro::post_init() 1 0.02614 0.02628 0.02658 0.75% Amr::writePlotFile() 2 0.02257 0.02288 0.02304 0.65% Castro::post_timestep() 10 0.01551 0.01609 0.01662 0.47% Castro::check_for_nan() 20 0.01022 0.01137 0.01452 0.41% MultiFab::contains_nan() 20 0.0102 0.01134 0.01449 0.41% Castro::apply_source_to_state() 20 0.01087 0.01172 0.01256 0.35% VisMF::Write(FabArray) 2 0.008499 0.009646 0.01255 0.35% FabArray::Saxpy() 20 0.01083 0.01168 0.01252 0.35% Castro::Castro() 1 0.009518 0.01129 0.01225 0.35% FabArray::setDomainBndry() 41 0.00687 0.009342 0.01035 0.29% Castro::computeNewDt() 9 0.009412 0.00943 0.00945 0.27% Castro::construct_old_source() 50 0.006213 0.008592 0.009232 0.26% Castro::construct_old_gravity_source() 10 0.006165 0.008519 0.009163 0.26% Castro::initMFs() 1 0.006707 0.007248 0.007893 0.22% Other 261 0.0268 0.03077 0.03416 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 35 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-3-gc09da9977004) finalized