Initializing AMReX (24.08-4-g4efca7995054)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-4-g4efca7995054) initialized Starting run at 05:38:25 UTC on 2024-08-06. Successfully read inputs file ... Castro git describe: 24.08 AMReX git describe: 24.08-4-g4efca7995 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.0147398 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.337518745 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.339211623 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.356167277 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.335743883 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.377875085 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.315865848 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308580695 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.330963841 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307681263 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308400579 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007706783 seconds Ending run at 05:38:28 UTC on 2024-08-06. Run time = 3.515914247 Run time without initialization = 3.330959128 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.515 ... 3.516 ... 3.516 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2656 2.3255 2.3903 67.98% Gravity::make_radial_gravity() 21 0.3069 0.3147 0.3339 9.50% check_for_negative_density() 10 0.03402 0.1018 0.16 4.55% Castro::initData() 1 0.05096 0.08847 0.1208 3.44% FabArray::ParallelCopy_finish() 41 0.04178 0.06395 0.1099 3.12% Castro::estTimeStep() 21 0.03 0.06906 0.1085 3.09% amrex::Copy() 193 0.06025 0.08146 0.09546 2.71% FabArray::setVal() 143 0.04913 0.06418 0.07042 2.00% Castro::reset_internal_energy(Fab) 1008 0.04259 0.0463 0.04843 1.38% Castro::normalize_species() 62 0.04102 0.0421 0.04293 1.22% FabArray::ParallelCopy_nowait() 41 0.03414 0.0397 0.04188 1.19% FillPatchIterator::Initialize 41 0.02646 0.03284 0.03606 1.03% StateData::FillBoundary(geom) 41 0.0305 0.03284 0.03591 1.02% Gravity::interpolate_monopole_grav() 21 0.02812 0.0303 0.03236 0.92% Castro::construct_new_gravity_source() 10 0.02276 0.02481 0.02823 0.80% Castro::computeTemp() 63 0.01892 0.02067 0.02146 0.61% Castro::initialize_do_advance() 10 0.0112 0.0162 0.01786 0.51% Castro::initialize_advance() 10 0.005274 0.01025 0.01298 0.37% MultiFab::contains_nan() 20 0.01064 0.01141 0.01262 0.36% Amr::writePlotFile() 2 0.0077 0.01029 0.01259 0.36% VisMF::Write(FabArray) 2 0.008884 0.009966 0.01236 0.35% FabArray::Saxpy() 20 0.009727 0.01149 0.01223 0.35% FabArray::setDomainBndry() 41 0.00788 0.009786 0.01163 0.33% Castro::construct_old_gravity_source() 10 0.006483 0.008529 0.009188 0.26% Castro::initMFs() 1 0.006676 0.007446 0.008184 0.23% Castro::construct_new_source() 50 0.005156 0.00587 0.0062 0.18% main() 1 0.003691 0.004153 0.00443 0.13% Gravity::get_new_grav_vector() 11 0.002502 0.003332 0.003643 0.10% Amr::coarseTimeStep() 10 0.001302 0.002231 0.003541 0.10% Gravity::get_old_grav_vector() 10 0.00151 0.002081 0.002462 0.07% Castro::finalize_do_advance() 10 0.0004728 0.001038 0.001528 0.04% AmrLevel::FillPatch() 41 0.000705 0.0009563 0.001159 0.03% Amr::timeStep() 10 0.0001825 0.0002415 0.0005202 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002643 0.0002822 0.0003017 0.01% Castro::clean_state() 62 0.0001414 0.0001649 0.0001861 0.01% Castro::do_advance_ctu() 10 0.0001381 0.0001545 0.000185 0.01% FillPatchIterator::FillFromLevel0() 41 8.843e-05 0.000106 0.0001298 0.00% StateDataPhysBCFunct::() 41 9.333e-05 0.0001029 0.0001192 0.00% FabArray::ParallelCopy() 41 7.073e-05 8.638e-05 0.0001069 0.00% Castro::construct_old_source() 50 5.337e-05 7.376e-05 9.794e-05 0.00% Castro::do_old_sources() 10 7.896e-05 8.617e-05 9.683e-05 0.00% FillPatchSingleLevel 41 7.024e-05 7.771e-05 9.371e-05 0.00% Castro::Castro() 1 5.628e-05 7.383e-05 9.169e-05 0.00% Castro::do_new_sources() 10 5.249e-05 6.43e-05 7.965e-05 0.00% Amr::FinalizeInit() 1 3.943e-06 1.357e-05 7.501e-05 0.00% Amr::defBaseLevel() 1 3.423e-05 4.932e-05 6.881e-05 0.00% Castro::subcycle_advance_ctu() 10 4.351e-05 5.295e-05 6.566e-05 0.00% Castro::apply_source_to_state() 20 3.371e-05 4.362e-05 4.923e-05 0.00% Castro::construct_old_gravity() 10 3.83e-05 4.246e-05 4.921e-05 0.00% Castro::advance() 10 3.973e-05 4.318e-05 4.664e-05 0.00% Castro::construct_new_gravity() 10 3.253e-05 3.757e-05 4.264e-05 0.00% Castro::check_for_nan() 20 2.09e-05 2.587e-05 2.886e-05 0.00% Castro::expand_state() 10 2.204e-05 2.518e-05 2.723e-05 0.00% Castro::post_timestep() 10 1.522e-05 1.826e-05 2.013e-05 0.00% Castro::post_init() 1 8.755e-06 1.2e-05 1.694e-05 0.00% Castro::computeInitialDt() 2 3.188e-06 5.296e-06 1.492e-05 0.00% Castro::computeNewDt() 9 7.384e-06 8.855e-06 1.055e-05 0.00% Amr::InitializeInit() 1 2.774e-06 4.153e-06 8.95e-06 0.00% Amr::init() 1 1.711e-06 2.244e-06 2.684e-06 0.00% Amr::initialInit() 1 1.313e-06 1.778e-06 2.387e-06 0.00% Other 261 0.01742 0.02008 0.02232 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.515 3.516 3.516 100.00% Amr::coarseTimeStep() 10 3.319 3.319 3.319 94.40% Amr::timeStep() 10 3.305 3.306 3.307 94.06% Castro::advance() 10 3.289 3.29 3.291 93.59% Castro::subcycle_advance_ctu() 10 3.217 3.221 3.237 92.06% Castro::do_advance_ctu() 10 3.217 3.221 3.237 92.06% Castro::construct_ctu_hydro_source() 10 2.446 2.449 2.454 69.78% Gravity::make_radial_gravity() 21 0.3235 0.3307 0.3464 9.85% AmrLevel::FillPatch() 41 0.1927 0.2122 0.2341 6.66% Gravity::get_new_grav_vector() 11 0.2186 0.2211 0.2226 6.33% Castro::construct_old_gravity() 10 0.1953 0.1998 0.2122 6.03% Gravity::get_old_grav_vector() 10 0.1945 0.1991 0.2116 6.02% FillPatchIterator::Initialize 41 0.1627 0.1796 0.2107 5.99% Castro::construct_new_gravity() 10 0.1968 0.1988 0.1999 5.68% Amr::init() 1 0.1843 0.1845 0.1846 5.25% FillPatchIterator::FillFromLevel0() 41 0.1167 0.137 0.1757 5.00% FillPatchSingleLevel 41 0.1166 0.1368 0.1756 4.99% Castro::initialize_do_advance() 10 0.1617 0.1666 0.1699 4.83% Amr::initialInit() 1 0.1691 0.1695 0.1697 4.83% check_for_negative_density() 10 0.03402 0.1018 0.16 4.55% FabArray::ParallelCopy() 41 0.08322 0.1038 0.1442 4.10% Amr::InitializeInit() 1 0.07387 0.1101 0.1434 4.08% Amr::defBaseLevel() 1 0.07387 0.1101 0.1434 4.08% Castro::initData() 1 0.05442 0.09223 0.1246 3.54% Castro::expand_state() 10 0.1075 0.1132 0.124 3.53% Castro::clean_state() 62 0.1098 0.116 0.1197 3.40% FabArray::ParallelCopy_finish() 41 0.04178 0.06395 0.1099 3.12% Castro::estTimeStep() 21 0.03 0.06906 0.1085 3.09% Castro::do_old_sources() 10 0.09213 0.09979 0.1066 3.03% Amr::FinalizeInit() 1 0.02623 0.05941 0.09578 2.72% amrex::Copy() 193 0.06025 0.08146 0.09546 2.71% Castro::computeInitialDt() 2 0.00226 0.03547 0.07175 2.04% FabArray::setVal() 143 0.04913 0.06418 0.07042 2.00% Castro::computeTemp() 63 0.06205 0.06726 0.07013 1.99% Castro::initialize_advance() 10 0.0495 0.06593 0.06978 1.98% Castro::do_new_sources() 10 0.05786 0.06315 0.06934 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04286 0.04658 0.04873 1.39% Castro::reset_internal_energy(Fab) 1008 0.04259 0.0463 0.04843 1.38% Castro::normalize_species() 62 0.04102 0.0421 0.04293 1.22% FabArray::ParallelCopy_nowait() 41 0.03424 0.03979 0.04197 1.19% StateDataPhysBCFunct::() 41 0.0306 0.03294 0.03602 1.02% StateData::FillBoundary(geom) 41 0.0305 0.03284 0.03591 1.02% Castro::construct_new_source() 50 0.02849 0.03068 0.03443 0.98% Gravity::interpolate_monopole_grav() 21 0.02812 0.0303 0.03236 0.92% Castro::finalize_do_advance() 10 0.02002 0.02539 0.03044 0.87% Castro::construct_new_gravity_source() 10 0.02276 0.02481 0.02823 0.80% Castro::post_init() 1 0.0231 0.02351 0.02367 0.67% Amr::writePlotFile() 2 0.0227 0.02282 0.02325 0.66% Castro::post_timestep() 10 0.01521 0.01599 0.01656 0.47% Castro::check_for_nan() 20 0.01067 0.01144 0.01265 0.36% MultiFab::contains_nan() 20 0.01064 0.01141 0.01262 0.36% VisMF::Write(FabArray) 2 0.008884 0.009966 0.01236 0.35% Castro::apply_source_to_state() 20 0.009761 0.01153 0.01228 0.35% FabArray::Saxpy() 20 0.009727 0.01149 0.01223 0.35% Castro::Castro() 1 0.01 0.01127 0.01222 0.35% FabArray::setDomainBndry() 41 0.00788 0.009786 0.01163 0.33% Castro::construct_old_source() 50 0.006536 0.008603 0.009286 0.26% Castro::computeNewDt() 9 0.009232 0.009247 0.009265 0.26% Castro::construct_old_gravity_source() 10 0.006483 0.008529 0.009188 0.26% Castro::initMFs() 1 0.006676 0.007446 0.008184 0.23% Other 261 0.02771 0.03149 0.03486 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-4-g4efca7995054) finalized