Initializing AMReX (24.08-9-g6f039ae18e89)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-9-g6f039ae18e89) initialized Starting run at 05:37:08 UTC on 2024-08-07. Successfully read inputs file ... Castro git describe: 24.08-1-g36c0aaf32 AMReX git describe: 24.08-9-g6f039ae18 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015782915 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343200218 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.342336704 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322039219 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322314347 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.367569297 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311718579 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.303181171 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.30678689 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308051221 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307495684 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007526915 seconds Ending run at 05:37:12 UTC on 2024-08-07. Run time = 3.437266619 Run time without initialization = 3.247013076 Average number of zones advanced per microsecond: 0.807 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.437 ... 3.437 ... 3.437 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2514 2.3143 2.3786 69.20% Gravity::make_radial_gravity() 21 0.2882 0.2985 0.3139 9.13% check_for_negative_density() 10 0.01094 0.08038 0.1473 4.29% Castro::initData() 1 0.04764 0.08799 0.1232 3.58% Castro::estTimeStep() 21 0.02214 0.06361 0.1096 3.19% FabArray::ParallelCopy_finish() 41 0.0364 0.04702 0.08459 2.46% amrex::Copy() 193 0.06243 0.07689 0.08401 2.44% FabArray::setVal() 143 0.05125 0.06463 0.06973 2.03% Castro::reset_internal_energy(Fab) 1008 0.04546 0.04705 0.04887 1.42% Castro::normalize_species() 62 0.04081 0.04124 0.04242 1.23% FabArray::ParallelCopy_nowait() 41 0.03572 0.03989 0.04133 1.20% StateData::FillBoundary(geom) 41 0.02991 0.03252 0.03654 1.06% FillPatchIterator::Initialize 41 0.02706 0.03135 0.03363 0.98% Gravity::interpolate_monopole_grav() 21 0.02728 0.02901 0.03007 0.87% Castro::construct_new_gravity_source() 10 0.02347 0.02508 0.02717 0.79% Castro::computeTemp() 63 0.02042 0.02083 0.02187 0.64% Castro::initialize_do_advance() 10 0.01128 0.01553 0.01761 0.51% Castro::initialize_advance() 10 0.005283 0.01065 0.01369 0.40% VisMF::Write(FabArray) 2 0.009447 0.01009 0.01355 0.39% FabArray::Saxpy() 20 0.01092 0.01247 0.01352 0.39% MultiFab::contains_nan() 20 0.0104 0.01113 0.01224 0.36% FabArray::setDomainBndry() 41 0.007268 0.009362 0.01204 0.35% Amr::writePlotFile() 2 0.008171 0.01022 0.01107 0.32% Castro::construct_old_gravity_source() 10 0.006963 0.009541 0.01034 0.30% Castro::enforce_min_density() 62 0.006968 0.007319 0.007884 0.23% Castro::construct_new_source() 50 0.005609 0.006113 0.006378 0.19% main() 1 0.003715 0.004027 0.004206 0.12% Gravity::get_new_grav_vector() 11 0.002677 0.003471 0.003917 0.11% Gravity::get_old_grav_vector() 10 0.001567 0.001957 0.002586 0.08% Amr::coarseTimeStep() 10 0.0008051 0.001432 0.002027 0.06% AmrLevel::FillPatch() 41 0.0007216 0.0009692 0.001421 0.04% Castro::finalize_do_advance() 10 0.000414 0.0009834 0.001167 0.03% Amr::timeStep() 10 0.0001752 0.0002273 0.0003813 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002571 0.0002728 0.0002854 0.01% Castro::clean_state() 62 0.00014 0.0001589 0.0001778 0.01% Castro::do_advance_ctu() 10 0.0001289 0.0001423 0.0001627 0.00% FillPatchIterator::FillFromLevel0() 41 9.31e-05 0.0001064 0.0001151 0.00% StateDataPhysBCFunct::() 41 9.09e-05 9.962e-05 0.000111 0.00% Castro::Castro() 1 6.247e-05 9.011e-05 0.0001037 0.00% FabArray::ParallelCopy() 41 7.669e-05 8.523e-05 9.889e-05 0.00% Castro::do_old_sources() 10 7.455e-05 8.672e-05 9.815e-05 0.00% Castro::construct_old_source() 50 5.596e-05 7.177e-05 8.656e-05 0.00% FillPatchSingleLevel 41 6.594e-05 7.082e-05 8.045e-05 0.00% Amr::FinalizeInit() 1 3.393e-06 1.268e-05 7.136e-05 0.00% Castro::do_new_sources() 10 5.322e-05 6.03e-05 6.73e-05 0.00% Castro::construct_new_gravity() 10 2.861e-05 3.619e-05 6.105e-05 0.00% Castro::subcycle_advance_ctu() 10 4.11e-05 5.187e-05 6.082e-05 0.00% Castro::advance() 10 3.842e-05 4.413e-05 5.43e-05 0.00% Amr::defBaseLevel() 1 3.472e-05 4.333e-05 5.42e-05 0.00% Castro::apply_source_to_state() 20 4.035e-05 4.494e-05 5.127e-05 0.00% Castro::construct_old_gravity() 10 3.091e-05 3.669e-05 4.847e-05 0.00% Castro::check_for_nan() 20 2.304e-05 2.554e-05 2.852e-05 0.00% Castro::expand_state() 10 2.068e-05 2.286e-05 2.678e-05 0.00% Castro::post_timestep() 10 1.616e-05 1.81e-05 2.018e-05 0.00% Castro::post_init() 1 7.828e-06 8.867e-06 9.996e-06 0.00% Castro::computeNewDt() 9 7.344e-06 8.296e-06 9.087e-06 0.00% Amr::InitializeInit() 1 2.774e-06 3.516e-06 5.984e-06 0.00% Castro::computeInitialDt() 2 3.454e-06 4.169e-06 5.486e-06 0.00% Amr::init() 1 1.658e-06 2.102e-06 2.508e-06 0.00% Amr::initialInit() 1 1.253e-06 1.574e-06 2.047e-06 0.00% Other 200 0.01578 0.01982 0.02145 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.437 3.437 3.437 100.00% Amr::coarseTimeStep() 10 3.235 3.235 3.235 94.13% Amr::timeStep() 10 3.223 3.223 3.224 93.79% Castro::advance() 10 3.206 3.207 3.207 93.31% Castro::subcycle_advance_ctu() 10 3.132 3.137 3.153 91.74% Castro::do_advance_ctu() 10 3.132 3.137 3.153 91.73% Castro::construct_ctu_hydro_source() 10 2.412 2.416 2.42 70.41% Gravity::make_radial_gravity() 21 0.3034 0.3148 0.3273 9.52% Gravity::get_new_grav_vector() 11 0.2102 0.2116 0.2134 6.21% AmrLevel::FillPatch() 41 0.1818 0.1919 0.2096 6.10% Castro::construct_old_gravity() 10 0.1785 0.1854 0.1953 5.68% Gravity::get_old_grav_vector() 10 0.1777 0.1848 0.1947 5.66% Amr::init() 1 0.1897 0.1898 0.1899 5.52% Castro::construct_new_gravity() 10 0.1855 0.1864 0.1872 5.45% FillPatchIterator::Initialize 41 0.1516 0.1606 0.185 5.38% Amr::initialInit() 1 0.1737 0.1746 0.1752 5.10% Castro::initialize_do_advance() 10 0.1536 0.1598 0.1659 4.83% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1199 0.1507 4.38% FillPatchSingleLevel 41 0.1127 0.1198 0.1506 4.38% check_for_negative_density() 10 0.01094 0.08038 0.1473 4.29% Amr::InitializeInit() 1 0.06627 0.1097 0.1454 4.23% Amr::defBaseLevel() 1 0.06626 0.1097 0.1454 4.23% Castro::initData() 1 0.05119 0.09186 0.1271 3.70% FabArray::ParallelCopy() 41 0.07737 0.08708 0.1205 3.51% Castro::clean_state() 62 0.1132 0.116 0.1197 3.48% Castro::expand_state() 10 0.09989 0.1074 0.1193 3.47% Castro::estTimeStep() 21 0.02214 0.06361 0.1096 3.19% Amr::FinalizeInit() 1 0.02953 0.06489 0.1088 3.17% Castro::do_old_sources() 10 0.09102 0.09238 0.094 2.73% FabArray::ParallelCopy_finish() 41 0.0364 0.04702 0.08459 2.46% amrex::Copy() 193 0.06243 0.07689 0.08401 2.44% Castro::computeInitialDt() 2 0.002489 0.03816 0.08164 2.38% Castro::initialize_advance() 10 0.04989 0.06718 0.07193 2.09% Castro::computeTemp() 63 0.06615 0.06815 0.07103 2.07% FabArray::setVal() 143 0.05125 0.06463 0.06973 2.03% Castro::do_new_sources() 10 0.06026 0.06406 0.06954 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04573 0.04733 0.04916 1.43% Castro::reset_internal_energy(Fab) 1008 0.04546 0.04705 0.04887 1.42% Castro::normalize_species() 62 0.04081 0.04124 0.04242 1.23% FabArray::ParallelCopy_nowait() 41 0.03581 0.03998 0.04141 1.20% StateDataPhysBCFunct::() 41 0.03001 0.03262 0.03663 1.07% StateData::FillBoundary(geom) 41 0.02991 0.03252 0.03654 1.06% Castro::construct_new_source() 50 0.02958 0.03119 0.03342 0.97% Gravity::interpolate_monopole_grav() 21 0.02728 0.02901 0.03007 0.87% Castro::construct_new_gravity_source() 10 0.02347 0.02508 0.02717 0.79% Castro::post_init() 1 0.02594 0.02648 0.02691 0.78% Amr::writePlotFile() 2 0.02231 0.02286 0.02356 0.69% Castro::finalize_do_advance() 10 0.01144 0.01715 0.02144 0.62% Castro::post_timestep() 10 0.01552 0.01597 0.01649 0.48% Castro::apply_source_to_state() 20 0.01096 0.01252 0.01357 0.39% VisMF::Write(FabArray) 2 0.009447 0.01009 0.01355 0.39% FabArray::Saxpy() 20 0.01092 0.01247 0.01352 0.39% Castro::Castro() 1 0.009659 0.01156 0.01231 0.36% Castro::check_for_nan() 20 0.01043 0.01115 0.01226 0.36% MultiFab::contains_nan() 20 0.0104 0.01113 0.01224 0.36% FabArray::setDomainBndry() 41 0.007268 0.009362 0.01204 0.35% Castro::construct_old_source() 50 0.007019 0.009612 0.01043 0.30% Castro::construct_old_gravity_source() 10 0.006963 0.009541 0.01034 0.30% Castro::computeNewDt() 9 0.009284 0.009297 0.009309 0.27% Castro::enforce_min_density() 62 0.006968 0.007319 0.007884 0.23% Other 200 0.02551 0.03097 0.03342 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 36 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-9-g6f039ae18e89) finalized