Initializing AMReX (24.08-9-g6f039ae18e89)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-9-g6f039ae18e89) initialized Starting run at 05:20:13 UTC on 2024-08-08. Successfully read inputs file ... Castro git describe: 24.08-1-g36c0aaf32 AMReX git describe: 24.08-9-g6f039ae18 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015563959 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345284692 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.329784396 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.354433009 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.342305632 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.344976325 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312698149 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.315087886 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.310558337 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.311760679 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.310812293 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007417768 seconds Ending run at 05:20:17 UTC on 2024-08-08. Run time = 3.909585517 Run time without initialization = 3.289635542 Average number of zones advanced per microsecond: 0.797 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.909 ... 3.909 ... 3.91 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2668 2.3147 2.3585 60.32% Amr::writePlotFile() 2 0.4053 0.4077 0.4099 10.48% Gravity::make_radial_gravity() 21 0.3046 0.3128 0.3196 8.17% Castro::estTimeStep() 21 0.02754 0.09912 0.1553 3.97% Castro::initData() 1 0.04878 0.09416 0.1498 3.83% check_for_negative_density() 10 0.05134 0.09719 0.1458 3.73% FabArray::setVal() 143 0.05381 0.06328 0.07525 1.92% amrex::Copy() 193 0.06501 0.06891 0.07489 1.92% FabArray::ParallelCopy_finish() 41 0.04552 0.05606 0.06819 1.74% Castro::normalize_species() 62 0.04207 0.05092 0.06378 1.63% Castro::reset_internal_energy(Fab) 1008 0.04518 0.04733 0.0492 1.26% FabArray::ParallelCopy_nowait() 41 0.03618 0.03732 0.03874 0.99% StateData::FillBoundary(geom) 41 0.03006 0.03219 0.03422 0.88% FillPatchIterator::Initialize 41 0.02876 0.03022 0.03128 0.80% Gravity::interpolate_monopole_grav() 21 0.02786 0.02972 0.03124 0.80% Castro::construct_new_gravity_source() 10 0.0218 0.02381 0.02719 0.70% Castro::computeTemp() 63 0.01975 0.02142 0.02235 0.57% Castro::initialize_do_advance() 10 0.01357 0.01502 0.0174 0.45% VisMF::Write(FabArray) 2 0.008832 0.009571 0.01231 0.31% Castro::initialize_advance() 10 0.005957 0.009928 0.01196 0.31% FabArray::Saxpy() 20 0.009703 0.01063 0.01153 0.30% MultiFab::contains_nan() 20 0.01043 0.01086 0.01149 0.29% Castro::initMFs() 1 0.00625 0.007916 0.01122 0.29% StateData::define() 4 0.005322 0.006581 0.009154 0.23% FabArray::setDomainBndry() 41 0.007489 0.008191 0.008999 0.23% Castro::construct_new_source() 50 0.005366 0.005663 0.005915 0.15% Amr::coarseTimeStep() 10 0.001322 0.003852 0.005531 0.14% main() 1 0.003408 0.003831 0.004165 0.11% Gravity::get_new_grav_vector() 11 0.002454 0.003298 0.003801 0.10% Gravity::get_old_grav_vector() 10 0.001585 0.001862 0.002137 0.05% Castro::finalize_do_advance() 10 0.0005186 0.0007253 0.0009667 0.02% AmrLevel::FillPatch() 41 0.0006892 0.0007495 0.0008683 0.02% Amr::timeStep() 10 0.0001705 0.0002383 0.0005137 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002651 0.0002826 0.0003065 0.01% Castro::clean_state() 62 0.0001413 0.0001637 0.0001969 0.01% Castro::do_advance_ctu() 10 0.0001251 0.0001461 0.000187 0.00% FillPatchIterator::FillFromLevel0() 41 9.591e-05 0.0001065 0.0001251 0.00% StateDataPhysBCFunct::() 41 8.237e-05 9.853e-05 0.0001231 0.00% Castro::do_old_sources() 10 7.159e-05 8.858e-05 0.0001135 0.00% FabArray::ParallelCopy() 41 6.945e-05 7.836e-05 9.346e-05 0.00% Castro::Castro() 1 5.025e-05 6.713e-05 9.09e-05 0.00% FillPatchSingleLevel 41 6.399e-05 7.21e-05 8.866e-05 0.00% Castro::construct_old_source() 50 5.786e-05 7.025e-05 8.266e-05 0.00% Amr::FinalizeInit() 1 3.653e-06 1.275e-05 7.308e-05 0.00% Amr::defBaseLevel() 1 4.15e-05 5.494e-05 6.825e-05 0.00% Castro::subcycle_advance_ctu() 10 4.007e-05 4.859e-05 6.728e-05 0.00% Castro::do_new_sources() 10 4.832e-05 5.735e-05 6.582e-05 0.00% Castro::advance() 10 3.766e-05 4.65e-05 6.216e-05 0.00% Castro::apply_source_to_state() 20 3.38e-05 4.04e-05 4.548e-05 0.00% Castro::construct_old_gravity() 10 3.045e-05 3.456e-05 3.931e-05 0.00% Castro::construct_new_gravity() 10 2.625e-05 3.14e-05 3.847e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.346e-05 1.951e-05 2.795e-05 0.00% Castro::check_for_nan() 20 2.294e-05 2.465e-05 2.743e-05 0.00% Castro::expand_state() 10 1.985e-05 2.368e-05 2.709e-05 0.00% Castro::post_timestep() 10 1.575e-05 1.756e-05 2.056e-05 0.00% Castro::post_init() 1 7.825e-06 9.461e-06 1.306e-05 0.00% Castro::computeInitialDt() 2 3.53e-06 4.849e-06 1.06e-05 0.00% Castro::computeNewDt() 9 7.618e-06 8.429e-06 9.396e-06 0.00% Amr::InitializeInit() 1 3.047e-06 4.317e-06 6.456e-06 0.00% Amr::init() 1 1.87e-06 2.335e-06 2.979e-06 0.00% Amr::initialInit() 1 1.297e-06 1.587e-06 2.069e-06 0.00% Other 266 0.0195 0.022 0.02424 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.909 3.909 3.91 100.00% Amr::coarseTimeStep() 10 3.278 3.278 3.278 83.85% Amr::timeStep() 10 3.262 3.263 3.266 83.53% Castro::advance() 10 3.245 3.245 3.246 83.03% Castro::subcycle_advance_ctu() 10 3.167 3.173 3.182 81.39% Castro::do_advance_ctu() 10 3.167 3.173 3.182 81.39% Castro::construct_ctu_hydro_source() 10 2.432 2.435 2.437 62.34% Amr::init() 1 0.6193 0.6195 0.6196 15.85% Amr::writePlotFile() 2 0.4191 0.4198 0.4205 10.76% Gravity::make_radial_gravity() 21 0.3178 0.3266 0.3344 8.55% Gravity::get_new_grav_vector() 11 0.2149 0.217 0.219 5.60% Amr::initialInit() 1 0.2065 0.2072 0.2078 5.31% AmrLevel::FillPatch() 41 0.179 0.1924 0.2029 5.19% Castro::construct_old_gravity() 10 0.1862 0.1912 0.1974 5.05% Gravity::get_old_grav_vector() 10 0.1857 0.1905 0.1968 5.03% Castro::construct_new_gravity() 10 0.1899 0.1917 0.193 4.94% Amr::InitializeInit() 1 0.06727 0.1167 0.1778 4.55% Amr::defBaseLevel() 1 0.06726 0.1167 0.1778 4.55% FillPatchIterator::Initialize 41 0.153 0.1644 0.1753 4.48% Castro::initialize_do_advance() 10 0.1497 0.1622 0.1696 4.34% Castro::estTimeStep() 21 0.02754 0.09912 0.1553 3.97% Castro::initData() 1 0.0527 0.09819 0.1534 3.92% check_for_negative_density() 10 0.05134 0.09719 0.1458 3.73% Castro::clean_state() 62 0.1164 0.1264 0.1402 3.59% Amr::FinalizeInit() 1 0.02977 0.09048 0.1392 3.56% FillPatchIterator::FillFromLevel0() 41 0.1167 0.126 0.1371 3.51% FillPatchSingleLevel 41 0.1166 0.1259 0.137 3.50% Castro::expand_state() 10 0.1004 0.1103 0.1183 3.03% Castro::computeInitialDt() 2 0.002459 0.06365 0.1129 2.89% FabArray::ParallelCopy() 41 0.08444 0.09355 0.1045 2.67% Castro::do_old_sources() 10 0.08594 0.08833 0.09017 2.31% Castro::initialize_advance() 10 0.05999 0.06886 0.07562 1.93% FabArray::setVal() 143 0.05381 0.06328 0.07525 1.92% amrex::Copy() 193 0.06501 0.06891 0.07489 1.92% Castro::do_new_sources() 10 0.05749 0.0641 0.07363 1.88% Castro::computeTemp() 63 0.0652 0.06904 0.07185 1.84% FabArray::ParallelCopy_finish() 41 0.04552 0.05606 0.06819 1.74% Castro::normalize_species() 62 0.04207 0.05092 0.06378 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04545 0.04761 0.0495 1.27% Castro::reset_internal_energy(Fab) 1008 0.04518 0.04733 0.0492 1.26% FabArray::ParallelCopy_nowait() 41 0.03627 0.0374 0.03885 0.99% StateDataPhysBCFunct::() 41 0.03016 0.03229 0.03431 0.88% StateData::FillBoundary(geom) 41 0.03006 0.03219 0.03422 0.88% Castro::finalize_do_advance() 10 0.01646 0.0266 0.03364 0.86% Castro::construct_new_source() 50 0.02716 0.02947 0.03287 0.84% Gravity::interpolate_monopole_grav() 21 0.02786 0.02972 0.03124 0.80% Castro::construct_new_gravity_source() 10 0.0218 0.02381 0.02719 0.70% Castro::post_init() 1 0.0257 0.02627 0.02709 0.69% Castro::post_timestep() 10 0.01568 0.01774 0.02057 0.53% Castro::Castro() 1 0.009124 0.01158 0.0156 0.40% VisMF::Write(FabArray) 2 0.008832 0.009571 0.01231 0.31% Castro::apply_source_to_state() 20 0.009739 0.01067 0.01158 0.30% FabArray::Saxpy() 20 0.009703 0.01063 0.01153 0.30% Castro::check_for_nan() 20 0.01045 0.01089 0.01152 0.29% MultiFab::contains_nan() 20 0.01043 0.01086 0.01149 0.29% Castro::initMFs() 1 0.00625 0.007916 0.01122 0.29% Castro::computeNewDt() 9 0.009592 0.009604 0.009614 0.25% AmrLevel::AmrLevel(dm) 1 0.00534 0.0066 0.009182 0.23% StateData::define() 4 0.005322 0.006581 0.009154 0.23% FabArray::setDomainBndry() 41 0.007489 0.008191 0.008999 0.23% Castro::construct_old_source() 50 0.007773 0.008167 0.008532 0.22% Other 266 0.02373 0.02756 0.03111 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 39 B 56 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-9-g6f039ae18e89) finalized