Initializing AMReX (24.08-11-gb6ed5237987e)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-11-gb6ed5237987e) initialized Starting run at 05:19:58 UTC on 2024-08-09. Successfully read inputs file ... Castro git describe: 24.08-1-g36c0aaf32 AMReX git describe: 24.08-11-gb6ed52379 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020269362 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.423897142 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.397097332 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.38190095 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.424956655 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.382602786 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.378496117 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.388531658 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.38798609 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.390622408 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.401170355 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.013676653 seconds Ending run at 05:20:02 UTC on 2024-08-09. Run time = 4.191542823 Run time without initialization = 3.978944149 Average number of zones advanced per microsecond: 0.659 Average number of zones advanced per microsecond per rank: 0.082 TinyProfiler total time across processes [min...avg...max]: 4.189 ... 4.191 ... 4.192 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3399 2.6462 2.8848 68.82% check_for_negative_density() 10 0.009626 0.2536 0.5667 13.52% Gravity::make_radial_gravity() 21 0.297 0.3131 0.3394 8.10% amrex::Copy() 193 0.09148 0.1165 0.1332 3.18% Castro::initData() 1 0.04879 0.08765 0.1276 3.04% Castro::estTimeStep() 21 0.02264 0.07082 0.117 2.79% FabArray::setVal() 143 0.09125 0.1024 0.1095 2.61% FabArray::ParallelCopy_finish() 41 0.05384 0.06507 0.0889 2.12% FabArray::ParallelCopy_nowait() 41 0.05564 0.05963 0.06173 1.47% FillPatchIterator::Initialize 41 0.0474 0.05382 0.06058 1.45% Castro::reset_internal_energy(Fab) 1008 0.04932 0.05193 0.05434 1.30% Castro::normalize_species() 62 0.04245 0.04297 0.04388 1.05% StateData::FillBoundary(geom) 41 0.03521 0.03988 0.04306 1.03% Castro::construct_new_gravity_source() 10 0.02857 0.03187 0.0349 0.83% Gravity::interpolate_monopole_grav() 21 0.02821 0.02971 0.03069 0.73% Castro::initialize_do_advance() 10 0.02478 0.02571 0.02714 0.65% Castro::computeTemp() 63 0.02193 0.02298 0.02395 0.57% FabArray::setDomainBndry() 41 0.01437 0.01821 0.02235 0.53% FabArray::Saxpy() 20 0.01853 0.01932 0.02047 0.49% VisMF::Write(FabArray) 2 0.0121 0.01423 0.01948 0.46% Castro::initialize_advance() 10 0.01531 0.01646 0.0177 0.42% MultiFab::contains_nan() 20 0.01304 0.01532 0.01696 0.40% Amr::writePlotFile() 2 0.01118 0.01432 0.0163 0.39% Castro::construct_old_gravity_source() 10 0.01437 0.01531 0.01572 0.38% Castro::initMFs() 1 0.008734 0.009959 0.01135 0.27% Castro::enforce_min_density() 62 0.007785 0.008404 0.008728 0.21% Castro::construct_new_source() 50 0.00726 0.007976 0.008685 0.21% main() 1 0.005251 0.00676 0.007465 0.18% Gravity::get_new_grav_vector() 11 0.003962 0.005133 0.006587 0.16% Gravity::get_old_grav_vector() 10 0.002686 0.002928 0.003194 0.08% Amr::coarseTimeStep() 10 0.001026 0.001578 0.002052 0.05% AmrLevel::FillPatch() 41 0.001069 0.001235 0.00145 0.03% Castro::finalize_do_advance() 10 0.001148 0.001255 0.001305 0.03% Amr::timeStep() 10 0.0001703 0.0002679 0.0005884 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003107 0.0003241 0.0003452 0.01% Castro::do_advance_ctu() 10 0.0001712 0.0002097 0.0002515 0.01% Castro::clean_state() 62 0.0001909 0.0002084 0.0002208 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001337 0.0001526 0.0001855 0.00% Castro::Castro() 1 7.604e-05 0.0001159 0.0001716 0.00% StateDataPhysBCFunct::() 41 0.0001133 0.0001323 0.0001517 0.00% Castro::do_old_sources() 10 0.0001022 0.000123 0.0001414 0.00% Castro::construct_old_source() 50 8.529e-05 0.0001035 0.0001156 0.00% FabArray::ParallelCopy() 41 9.213e-05 0.000104 0.0001137 0.00% FillPatchSingleLevel 41 8.597e-05 0.0001018 0.0001109 0.00% Castro::do_new_sources() 10 6.953e-05 7.721e-05 8.757e-05 0.00% Castro::subcycle_advance_ctu() 10 6.216e-05 7.294e-05 8.366e-05 0.00% Amr::FinalizeInit() 1 4.479e-06 1.469e-05 8.208e-05 0.00% Castro::apply_source_to_state() 20 5.385e-05 6.189e-05 6.807e-05 0.00% Castro::advance() 10 4.547e-05 5.329e-05 6.605e-05 0.00% Castro::construct_new_gravity() 10 3.063e-05 4.307e-05 6.42e-05 0.00% Amr::defBaseLevel() 1 3.568e-05 5.032e-05 6.293e-05 0.00% Castro::expand_state() 10 2.859e-05 4.119e-05 5.451e-05 0.00% Castro::construct_old_gravity() 10 3.926e-05 4.72e-05 5.199e-05 0.00% Castro::check_for_nan() 20 2.668e-05 3.155e-05 4.009e-05 0.00% Castro::post_timestep() 10 1.71e-05 2.28e-05 3.871e-05 0.00% Castro::post_init() 1 9.054e-06 1.061e-05 1.486e-05 0.00% Castro::computeNewDt() 9 7.549e-06 8.809e-06 1.026e-05 0.00% Castro::computeInitialDt() 2 4.562e-06 5.185e-06 6.146e-06 0.00% Amr::InitializeInit() 1 2.845e-06 3.508e-06 5.084e-06 0.00% Amr::init() 1 1.795e-06 2.288e-06 2.793e-06 0.00% Amr::initialInit() 1 1.413e-06 1.84e-06 2.373e-06 0.00% Other 199 0.01315 0.01641 0.01788 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.189 4.191 4.192 100.00% Amr::coarseTimeStep() 10 3.958 3.958 3.958 94.42% Amr::timeStep() 10 3.946 3.946 3.947 94.16% Castro::advance() 10 3.929 3.93 3.93 93.76% Castro::subcycle_advance_ctu() 10 3.821 3.824 3.834 91.46% Castro::do_advance_ctu() 10 3.821 3.824 3.834 91.46% Castro::construct_ctu_hydro_source() 10 2.918 2.923 2.928 69.86% check_for_negative_density() 10 0.009626 0.2536 0.5667 13.52% Gravity::make_radial_gravity() 21 0.3207 0.3359 0.3618 8.63% AmrLevel::FillPatch() 41 0.278 0.2869 0.2989 7.13% FillPatchIterator::Initialize 41 0.2327 0.2372 0.2422 5.78% Castro::initialize_do_advance() 10 0.2189 0.2319 0.2414 5.76% Gravity::get_new_grav_vector() 11 0.2345 0.2354 0.2361 5.63% Castro::construct_old_gravity() 10 0.1944 0.2054 0.2254 5.38% Gravity::get_old_grav_vector() 10 0.1935 0.2045 0.2246 5.36% Amr::init() 1 0.2121 0.2122 0.2123 5.06% Castro::construct_new_gravity() 10 0.2043 0.205 0.2056 4.90% Amr::initialInit() 1 0.1917 0.1924 0.1926 4.59% FillPatchIterator::FillFromLevel0() 41 0.1557 0.1652 0.1804 4.30% FillPatchSingleLevel 41 0.1556 0.165 0.1802 4.30% Castro::expand_state() 10 0.1482 0.1605 0.1704 4.06% Amr::InitializeInit() 1 0.07879 0.1167 0.1578 3.77% Amr::defBaseLevel() 1 0.07878 0.1167 0.1578 3.77% FabArray::ParallelCopy() 41 0.1153 0.1249 0.1448 3.45% Castro::do_old_sources() 10 0.1361 0.1378 0.1404 3.35% amrex::Copy() 193 0.09148 0.1165 0.1332 3.18% Castro::initData() 1 0.05283 0.09239 0.1316 3.14% Castro::clean_state() 62 0.1228 0.1259 0.1287 3.07% Castro::estTimeStep() 21 0.02264 0.07082 0.117 2.79% Amr::FinalizeInit() 1 0.03466 0.07573 0.1137 2.71% FabArray::setVal() 143 0.09125 0.1024 0.1095 2.61% Castro::initialize_advance() 10 0.09091 0.1004 0.1036 2.47% FabArray::ParallelCopy_finish() 41 0.05384 0.06507 0.0889 2.12% Castro::do_new_sources() 10 0.07332 0.0801 0.08643 2.06% Castro::computeInitialDt() 2 0.002428 0.04356 0.08148 1.94% Castro::computeTemp() 63 0.07169 0.07524 0.07863 1.88% FabArray::ParallelCopy_nowait() 41 0.05577 0.05975 0.06184 1.48% Castro::reset_internal_energy(MultiFab) 63 0.04964 0.05226 0.05468 1.30% Castro::reset_internal_energy(Fab) 1008 0.04932 0.05193 0.05434 1.30% Castro::normalize_species() 62 0.04245 0.04297 0.04388 1.05% Castro::construct_new_source() 50 0.03584 0.03984 0.04345 1.04% StateDataPhysBCFunct::() 41 0.03535 0.04001 0.0432 1.03% StateData::FillBoundary(geom) 41 0.03521 0.03988 0.04306 1.03% Castro::construct_new_gravity_source() 10 0.02857 0.03187 0.0349 0.83% Amr::writePlotFile() 2 0.03348 0.03361 0.03422 0.82% Castro::post_init() 1 0.03098 0.03172 0.03193 0.76% Gravity::interpolate_monopole_grav() 21 0.02821 0.02971 0.03069 0.73% Castro::finalize_do_advance() 10 0.0118 0.0196 0.02809 0.67% FabArray::setDomainBndry() 41 0.01437 0.01821 0.02235 0.53% Castro::apply_source_to_state() 20 0.01859 0.01938 0.02054 0.49% FabArray::Saxpy() 20 0.01853 0.01932 0.02047 0.49% VisMF::Write(FabArray) 2 0.0121 0.01423 0.01948 0.46% Castro::Castro() 1 0.01402 0.01634 0.01776 0.42% Castro::check_for_nan() 20 0.01308 0.01535 0.01699 0.41% MultiFab::contains_nan() 20 0.01304 0.01532 0.01696 0.40% Castro::post_timestep() 10 0.01609 0.0162 0.01638 0.39% Castro::construct_old_source() 50 0.01448 0.01541 0.01583 0.38% Castro::construct_old_gravity_source() 10 0.01437 0.01531 0.01572 0.38% Castro::initMFs() 1 0.008734 0.009959 0.01135 0.27% Castro::computeNewDt() 9 0.008892 0.008923 0.008943 0.21% Castro::enforce_min_density() 62 0.007785 0.008404 0.008728 0.21% Other 199 0.0261 0.03072 0.03331 0.79% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 29 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-11-gb6ed5237987e) finalized