Initializing AMReX (24.08-12-ge792933f9561)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-12-ge792933f9561) initialized Starting run at 05:38:26 UTC on 2024-08-12. Successfully read inputs file ... Castro git describe: 24.08-1-g36c0aaf32 AMReX git describe: 24.08-12-ge792933f9 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020684884 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.435282965 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.398744417 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.386357651 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.426117759 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.397733726 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.388853195 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.388160087 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.388711356 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.390368428 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.395283554 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012782479 seconds Ending run at 05:38:30 UTC on 2024-08-12. Run time = 4.223133877 Run time without initialization = 4.017787475 Average number of zones advanced per microsecond: 0.652 Average number of zones advanced per microsecond per rank: 0.082 TinyProfiler total time across processes [min...avg...max]: 4.22 ... 4.222 ... 4.223 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3907 2.6550 2.8900 68.43% check_for_negative_density() 10 0.02657 0.2657 0.537 12.72% Gravity::make_radial_gravity() 21 0.2948 0.3133 0.3381 8.01% amrex::Copy() 193 0.0995 0.119 0.1347 3.19% Castro::initData() 1 0.04882 0.08702 0.1234 2.92% FabArray::setVal() 143 0.09323 0.1042 0.114 2.70% Castro::estTimeStep() 21 0.0234 0.06715 0.1133 2.68% FabArray::ParallelCopy_finish() 41 0.05625 0.06803 0.08327 1.97% FabArray::ParallelCopy_nowait() 41 0.05833 0.06171 0.06419 1.52% FillPatchIterator::Initialize 41 0.04712 0.05474 0.06009 1.42% Castro::reset_internal_energy(Fab) 1008 0.04849 0.05185 0.05504 1.30% StateData::FillBoundary(geom) 41 0.03536 0.04154 0.04844 1.15% Castro::normalize_species() 62 0.04255 0.04337 0.04415 1.05% Castro::construct_new_gravity_source() 10 0.02888 0.03201 0.03479 0.82% Gravity::interpolate_monopole_grav() 21 0.02773 0.02925 0.02965 0.70% Castro::initialize_do_advance() 10 0.02481 0.02645 0.02818 0.67% FabArray::setDomainBndry() 41 0.01616 0.02013 0.02382 0.56% Castro::computeTemp() 63 0.02089 0.02269 0.02381 0.56% FabArray::Saxpy() 20 0.01901 0.01945 0.02089 0.49% Castro::initialize_advance() 10 0.01532 0.01674 0.01825 0.43% VisMF::Write(FabArray) 2 0.01239 0.01383 0.01778 0.42% Castro::construct_old_gravity_source() 10 0.01377 0.01534 0.01607 0.38% Amr::writePlotFile() 2 0.01003 0.01419 0.01565 0.37% MultiFab::contains_nan() 20 0.01277 0.01453 0.01564 0.37% Castro::initMFs() 1 0.008652 0.009447 0.01141 0.27% Castro::construct_new_source() 50 0.007066 0.008089 0.008807 0.21% main() 1 0.005334 0.007473 0.008744 0.21% Gravity::get_new_grav_vector() 11 0.003685 0.005095 0.006268 0.15% Amr::coarseTimeStep() 10 0.0009154 0.002092 0.003521 0.08% Gravity::get_old_grav_vector() 10 0.00256 0.002866 0.003185 0.08% AmrLevel::FillPatch() 41 0.001238 0.001406 0.001754 0.04% Castro::finalize_do_advance() 10 0.00102 0.001111 0.001174 0.03% Amr::timeStep() 10 0.0001958 0.0002784 0.0004329 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000328 0.0003433 0.0003556 0.01% Castro::do_advance_ctu() 10 0.0001709 0.0002164 0.0002657 0.01% Castro::clean_state() 62 0.000194 0.0002122 0.0002322 0.01% Castro::Castro() 1 7.323e-05 0.0001475 0.0002052 0.00% FillPatchIterator::FillFromLevel0() 41 0.000149 0.0001624 0.0001927 0.00% StateDataPhysBCFunct::() 41 0.0001305 0.0001494 0.0001723 0.00% Castro::construct_old_source() 50 0.0001075 0.0001213 0.0001573 0.00% FabArray::ParallelCopy() 41 0.0001089 0.0001225 0.000137 0.00% Castro::do_old_sources() 10 0.0001248 0.0001309 0.0001365 0.00% FillPatchSingleLevel 41 9.395e-05 0.0001072 0.0001247 0.00% Amr::FinalizeInit() 1 4.081e-06 1.747e-05 9.977e-05 0.00% Castro::subcycle_advance_ctu() 10 5.865e-05 7.776e-05 9.549e-05 0.00% Castro::do_new_sources() 10 7.056e-05 7.853e-05 8.662e-05 0.00% Castro::apply_source_to_state() 20 5.698e-05 6.472e-05 7.717e-05 0.00% Castro::expand_state() 10 3.225e-05 4.403e-05 6.702e-05 0.00% Castro::construct_new_gravity() 10 2.898e-05 4.499e-05 6.639e-05 0.00% Castro::construct_old_gravity() 10 4.618e-05 5.429e-05 6.502e-05 0.00% Amr::defBaseLevel() 1 3.336e-05 5.019e-05 6.353e-05 0.00% Castro::advance() 10 5.236e-05 5.714e-05 6.253e-05 0.00% Castro::check_for_nan() 20 2.387e-05 2.994e-05 3.533e-05 0.00% Castro::post_timestep() 10 1.682e-05 2.179e-05 2.806e-05 0.00% Castro::post_init() 1 9.901e-06 1.374e-05 2.646e-05 0.00% Castro::computeNewDt() 9 8.454e-06 9.527e-06 1.133e-05 0.00% Castro::computeInitialDt() 2 4.547e-06 5.662e-06 7.832e-06 0.00% Amr::InitializeInit() 1 3.156e-06 4.109e-06 5.858e-06 0.00% Amr::init() 1 2.231e-06 2.846e-06 3.976e-06 0.00% Amr::initialInit() 1 1.662e-06 2.112e-06 2.794e-06 0.00% Other 261 0.02168 0.02447 0.02634 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.22 4.222 4.223 100.00% Amr::coarseTimeStep() 10 3.996 3.996 3.996 94.63% Amr::timeStep() 10 3.981 3.983 3.984 94.34% Castro::advance() 10 3.966 3.967 3.967 93.94% Castro::subcycle_advance_ctu() 10 3.852 3.859 3.866 91.53% Castro::do_advance_ctu() 10 3.852 3.859 3.866 91.53% Castro::construct_ctu_hydro_source() 10 2.937 2.943 2.956 69.99% check_for_negative_density() 10 0.02657 0.2657 0.537 12.72% Gravity::make_radial_gravity() 21 0.3184 0.3365 0.3614 8.56% AmrLevel::FillPatch() 41 0.2851 0.2972 0.3113 7.37% FillPatchIterator::Initialize 41 0.2399 0.2468 0.2534 6.00% Castro::initialize_do_advance() 10 0.2282 0.242 0.2513 5.95% Gravity::get_new_grav_vector() 11 0.2323 0.2336 0.2354 5.57% Castro::construct_old_gravity() 10 0.1955 0.2082 0.2276 5.39% Gravity::get_old_grav_vector() 10 0.1945 0.2073 0.2268 5.37% Castro::construct_new_gravity() 10 0.2038 0.2054 0.2066 4.89% Amr::init() 1 0.2048 0.205 0.205 4.85% Amr::initialInit() 1 0.1839 0.1841 0.1842 4.36% FillPatchIterator::FillFromLevel0() 41 0.1626 0.172 0.1819 4.31% FillPatchSingleLevel 41 0.1624 0.1718 0.1818 4.30% Castro::expand_state() 10 0.1563 0.1702 0.1811 4.29% Amr::InitializeInit() 1 0.07756 0.1159 0.1517 3.59% Amr::defBaseLevel() 1 0.07756 0.1159 0.1517 3.59% FabArray::ParallelCopy() 41 0.1199 0.13 0.142 3.36% Castro::do_old_sources() 10 0.1315 0.1381 0.141 3.34% amrex::Copy() 193 0.0995 0.119 0.1347 3.19% Castro::clean_state() 62 0.1212 0.1258 0.13 3.08% Castro::initData() 1 0.05398 0.09197 0.129 3.05% FabArray::setVal() 143 0.09323 0.1042 0.114 2.70% Castro::estTimeStep() 21 0.0234 0.06715 0.1133 2.68% Castro::initialize_advance() 10 0.0962 0.1026 0.1099 2.60% Amr::FinalizeInit() 1 0.03252 0.06821 0.1066 2.52% Castro::do_new_sources() 10 0.0716 0.08 0.08661 2.05% FabArray::ParallelCopy_finish() 41 0.05625 0.06803 0.08327 1.97% Castro::computeTemp() 63 0.06973 0.07489 0.07895 1.87% Castro::computeInitialDt() 2 0.002385 0.03817 0.0765 1.81% FabArray::ParallelCopy_nowait() 41 0.05845 0.06183 0.06433 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04884 0.0522 0.05539 1.31% Castro::reset_internal_energy(Fab) 1008 0.04849 0.05185 0.05504 1.30% StateDataPhysBCFunct::() 41 0.03549 0.04169 0.04861 1.15% StateData::FillBoundary(geom) 41 0.03536 0.04154 0.04844 1.15% Castro::normalize_species() 62 0.04255 0.04337 0.04415 1.05% Castro::construct_new_source() 50 0.03594 0.0401 0.04355 1.03% Castro::construct_new_gravity_source() 10 0.02888 0.03201 0.03479 0.82% Amr::writePlotFile() 2 0.03365 0.03374 0.03393 0.80% Castro::finalize_do_advance() 10 0.01153 0.01996 0.03005 0.71% Gravity::interpolate_monopole_grav() 21 0.02773 0.02925 0.02965 0.70% Castro::post_init() 1 0.02934 0.02951 0.02964 0.70% FabArray::setDomainBndry() 41 0.01616 0.02013 0.02382 0.56% Castro::apply_source_to_state() 20 0.01907 0.01951 0.02097 0.50% FabArray::Saxpy() 20 0.01901 0.01945 0.02089 0.49% VisMF::Write(FabArray) 2 0.01239 0.01383 0.01778 0.42% Castro::Castro() 1 0.01507 0.01636 0.0177 0.42% Castro::post_timestep() 10 0.01494 0.01597 0.01674 0.40% Castro::construct_old_source() 50 0.01388 0.01546 0.01619 0.38% Castro::construct_old_gravity_source() 10 0.01377 0.01534 0.01607 0.38% Castro::check_for_nan() 20 0.01279 0.01456 0.01567 0.37% MultiFab::contains_nan() 20 0.01277 0.01453 0.01564 0.37% Castro::initMFs() 1 0.008652 0.009447 0.01141 0.27% Castro::computeNewDt() 9 0.01012 0.01014 0.01015 0.24% Other 261 0.0346 0.03849 0.04167 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 30 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-12-ge792933f9561) finalized