Initializing AMReX (24.08-12-ge792933f9561)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-12-ge792933f9561) initialized Starting run at 05:20:54 UTC on 2024-08-13. Successfully read inputs file ... Castro git describe: 24.08-3-g15327db6b AMReX git describe: 24.08-12-ge792933f9 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013959736 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346706557 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.344792396 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.326290152 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322927225 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.368652965 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313002866 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.307573843 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305103675 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.30647766 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.306374961 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00751122 seconds Ending run at 05:20:58 UTC on 2024-08-13. Run time = 3.453995454 Run time without initialization = 3.259831511 Average number of zones advanced per microsecond: 0.804 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.454 ... 3.454 ... 3.454 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2676 2.3119 2.3376 67.68% Gravity::make_radial_gravity() 21 0.2844 0.2929 0.3096 8.96% Castro::initData() 1 0.04797 0.08839 0.1319 3.82% check_for_negative_density() 10 0.05517 0.07897 0.1264 3.66% Castro::estTimeStep() 21 0.03496 0.07365 0.1125 3.26% FabArray::ParallelCopy_finish() 41 0.04057 0.05197 0.09385 2.72% amrex::Copy() 193 0.06143 0.077 0.0891 2.58% FabArray::setVal() 143 0.05038 0.06366 0.06771 1.96% Castro::normalize_species() 62 0.04188 0.04945 0.05798 1.68% Castro::reset_internal_energy(Fab) 1008 0.04323 0.04682 0.0488 1.41% FabArray::ParallelCopy_nowait() 41 0.03553 0.04114 0.04634 1.34% StateData::FillBoundary(geom) 41 0.02957 0.03242 0.03484 1.01% FillPatchIterator::Initialize 41 0.02691 0.03133 0.03362 0.97% Gravity::interpolate_monopole_grav() 21 0.02755 0.02889 0.03002 0.87% Castro::construct_new_gravity_source() 10 0.02348 0.0248 0.02661 0.77% Castro::computeTemp() 63 0.02017 0.02137 0.02259 0.65% Castro::initialize_do_advance() 10 0.01147 0.01624 0.01785 0.52% FabArray::Saxpy() 20 0.01069 0.01286 0.01421 0.41% Castro::construct_old_gravity_source() 10 0.007061 0.01017 0.01398 0.40% Castro::initialize_advance() 10 0.005236 0.0108 0.01331 0.39% FabArray::setDomainBndry() 41 0.007274 0.00981 0.01256 0.36% MultiFab::contains_nan() 20 0.01018 0.01139 0.0124 0.36% Amr::writePlotFile() 2 0.007208 0.009699 0.01209 0.35% VisMF::Write(FabArray) 2 0.008429 0.00944 0.01175 0.34% Castro::enforce_min_density() 62 0.007019 0.007321 0.007575 0.22% Castro::construct_new_source() 50 0.005662 0.006347 0.006553 0.19% Amr::coarseTimeStep() 10 0.001107 0.003739 0.005642 0.16% main() 1 0.003505 0.003767 0.00396 0.11% Gravity::get_new_grav_vector() 11 0.002688 0.003155 0.003807 0.11% Gravity::get_old_grav_vector() 10 0.001537 0.001997 0.002495 0.07% Castro::finalize_do_advance() 10 0.0003987 0.0008991 0.00101 0.03% AmrLevel::FillPatch() 41 0.0006326 0.0008051 0.0009118 0.03% Amr::timeStep() 10 0.000175 0.0002352 0.0004788 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002824 0.0002932 0.000305 0.01% Castro::do_advance_ctu() 10 0.0001162 0.0001539 0.0001815 0.01% Castro::clean_state() 62 0.0001443 0.0001635 0.0001815 0.01% Castro::construct_old_source() 50 5.377e-05 8.768e-05 0.0001386 0.00% FillPatchIterator::FillFromLevel0() 41 9.639e-05 0.0001075 0.000122 0.00% StateDataPhysBCFunct::() 41 9.179e-05 0.0001032 0.0001195 0.00% FabArray::ParallelCopy() 41 7.124e-05 8.698e-05 0.0001158 0.00% Amr::FinalizeInit() 1 3.509e-06 1.745e-05 0.000108 0.00% Castro::do_old_sources() 10 7.631e-05 8.806e-05 0.000102 0.00% FillPatchSingleLevel 41 6.203e-05 7.065e-05 8.328e-05 0.00% Castro::Castro() 1 6.136e-05 6.828e-05 7.878e-05 0.00% Castro::apply_source_to_state() 20 4.006e-05 4.783e-05 7.583e-05 0.00% Castro::do_new_sources() 10 5.513e-05 6.204e-05 6.914e-05 0.00% Castro::subcycle_advance_ctu() 10 4.042e-05 5.195e-05 6.112e-05 0.00% Castro::construct_new_gravity() 10 2.938e-05 3.53e-05 5.254e-05 0.00% Castro::advance() 10 3.401e-05 4.267e-05 4.74e-05 0.00% Castro::construct_old_gravity() 10 3.116e-05 3.805e-05 4.71e-05 0.00% Amr::defBaseLevel() 1 3.168e-05 4.172e-05 4.643e-05 0.00% Castro::expand_state() 10 1.84e-05 2.38e-05 2.764e-05 0.00% Castro::check_for_nan() 20 2.168e-05 2.441e-05 2.722e-05 0.00% Castro::post_timestep() 10 1.533e-05 1.668e-05 1.849e-05 0.00% Castro::post_init() 1 7.792e-06 8.706e-06 9.981e-06 0.00% Castro::computeNewDt() 9 7.551e-06 8.481e-06 9.796e-06 0.00% Amr::InitializeInit() 1 2.798e-06 3.481e-06 5.758e-06 0.00% Castro::computeInitialDt() 2 3.321e-06 3.884e-06 4.696e-06 0.00% Amr::init() 1 1.654e-06 2.263e-06 2.61e-06 0.00% Amr::initialInit() 1 1.387e-06 1.806e-06 2.158e-06 0.00% Other 200 0.01621 0.01891 0.02024 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.454 3.454 3.454 100.00% Amr::coarseTimeStep() 10 3.248 3.248 3.248 94.05% Amr::timeStep() 10 3.232 3.234 3.237 93.71% Castro::advance() 10 3.216 3.217 3.217 93.13% Castro::subcycle_advance_ctu() 10 3.138 3.145 3.163 91.57% Castro::do_advance_ctu() 10 3.138 3.145 3.163 91.57% Castro::construct_ctu_hydro_source() 10 2.405 2.414 2.419 70.02% Gravity::make_radial_gravity() 21 0.2988 0.308 0.3226 9.34% AmrLevel::FillPatch() 41 0.1879 0.1989 0.2174 6.29% Gravity::get_new_grav_vector() 11 0.2038 0.2052 0.2069 5.99% Castro::construct_old_gravity() 10 0.1789 0.1848 0.1957 5.67% Gravity::get_old_grav_vector() 10 0.1782 0.1841 0.1951 5.65% Amr::init() 1 0.1936 0.1938 0.1938 5.61% FillPatchIterator::Initialize 41 0.1578 0.1671 0.1935 5.60% Castro::construct_new_gravity() 10 0.182 0.1831 0.1845 5.34% Amr::initialInit() 1 0.1792 0.1796 0.1798 5.20% Castro::initialize_do_advance() 10 0.1563 0.1607 0.1677 4.85% FillPatchIterator::FillFromLevel0() 41 0.1162 0.126 0.1594 4.61% FillPatchSingleLevel 41 0.1161 0.1259 0.1593 4.61% Amr::InitializeInit() 1 0.06902 0.1092 0.1536 4.45% Amr::defBaseLevel() 1 0.06902 0.1092 0.1536 4.45% Castro::initData() 1 0.05217 0.09234 0.1357 3.93% Castro::clean_state() 62 0.1165 0.1245 0.1345 3.89% FabArray::ParallelCopy() 41 0.08476 0.09327 0.1295 3.75% check_for_negative_density() 10 0.05517 0.07897 0.1264 3.66% Castro::expand_state() 10 0.102 0.1075 0.1202 3.48% Castro::estTimeStep() 21 0.03496 0.07365 0.1125 3.26% Amr::FinalizeInit() 1 0.02561 0.0704 0.1106 3.20% Castro::do_old_sources() 10 0.09857 0.1022 0.1075 3.11% FabArray::ParallelCopy_finish() 41 0.04057 0.05197 0.09385 2.72% amrex::Copy() 193 0.06143 0.077 0.0891 2.58% Castro::computeInitialDt() 2 0.002476 0.04681 0.08699 2.52% Castro::initialize_advance() 10 0.04985 0.06858 0.07485 2.17% Castro::computeTemp() 63 0.06368 0.06848 0.07122 2.06% Castro::do_new_sources() 10 0.06057 0.06558 0.07015 2.03% FabArray::setVal() 143 0.05038 0.06366 0.06771 1.96% Castro::normalize_species() 62 0.04188 0.04945 0.05798 1.68% Castro::reset_internal_energy(MultiFab) 63 0.04351 0.04711 0.0491 1.42% Castro::reset_internal_energy(Fab) 1008 0.04323 0.04682 0.0488 1.41% FabArray::ParallelCopy_nowait() 41 0.03561 0.04122 0.04642 1.34% StateDataPhysBCFunct::() 41 0.02966 0.03253 0.03496 1.01% StateData::FillBoundary(geom) 41 0.02957 0.03242 0.03484 1.01% Castro::construct_new_source() 50 0.0295 0.03115 0.03312 0.96% Gravity::interpolate_monopole_grav() 21 0.02755 0.02889 0.03002 0.87% Castro::construct_new_gravity_source() 10 0.02348 0.0248 0.02661 0.77% Castro::finalize_do_advance() 10 0.01436 0.01868 0.02382 0.69% Castro::post_init() 1 0.02306 0.02322 0.02336 0.68% Amr::writePlotFile() 2 0.02165 0.02177 0.02223 0.64% Castro::post_timestep() 10 0.01599 0.01733 0.01992 0.58% Castro::apply_source_to_state() 20 0.01073 0.01291 0.01428 0.41% FabArray::Saxpy() 20 0.01069 0.01286 0.01421 0.41% Castro::construct_old_source() 50 0.007115 0.01025 0.01412 0.41% Castro::construct_old_gravity_source() 10 0.007061 0.01017 0.01398 0.40% FabArray::setDomainBndry() 41 0.007274 0.00981 0.01256 0.36% Castro::check_for_nan() 20 0.01021 0.01142 0.01243 0.36% MultiFab::contains_nan() 20 0.01018 0.01139 0.0124 0.36% VisMF::Write(FabArray) 2 0.008429 0.00944 0.01175 0.34% Castro::Castro() 1 0.009328 0.01087 0.01153 0.33% Castro::computeNewDt() 9 0.009063 0.00908 0.009095 0.26% Castro::enforce_min_density() 62 0.007019 0.007321 0.007575 0.22% Other 200 0.02594 0.02999 0.03205 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 38 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-12-ge792933f9561) finalized