Initializing AMReX (24.08-13-g5dedac0b7d70)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-13-g5dedac0b7d70) initialized Starting run at 05:37:19 UTC on 2024-08-14. Successfully read inputs file ... Castro git describe: 24.08-3-g15327db6b AMReX git describe: 24.08-13-g5dedac0b7 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014274277 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348291528 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.333889905 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.340469188 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.325492525 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.375932229 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.314946784 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.309075737 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.308526991 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308435472 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.309260877 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008099503 seconds Ending run at 05:37:22 UTC on 2024-08-14. Run time = 3.474883462 Run time without initialization = 3.2871481 Average number of zones advanced per microsecond: 0.797 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.475 ... 3.475 ... 3.475 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2681 2.3156 2.3529 67.71% Gravity::make_radial_gravity() 21 0.2907 0.2976 0.311 8.95% check_for_negative_density() 10 0.05962 0.1004 0.1491 4.29% Castro::initData() 1 0.04857 0.08712 0.1249 3.60% Castro::estTimeStep() 21 0.02929 0.06696 0.1077 3.10% FabArray::ParallelCopy_finish() 41 0.03889 0.05994 0.1019 2.93% amrex::Copy() 193 0.0617 0.07984 0.08766 2.52% FabArray::setVal() 143 0.05123 0.06385 0.06904 1.99% Castro::reset_internal_energy(Fab) 1008 0.04462 0.04621 0.04797 1.38% Castro::normalize_species() 62 0.04134 0.04253 0.04465 1.28% FabArray::ParallelCopy_nowait() 41 0.03576 0.03973 0.04252 1.22% FillPatchIterator::Initialize 41 0.02691 0.03176 0.03696 1.06% StateData::FillBoundary(geom) 41 0.03067 0.0327 0.03467 1.00% Gravity::interpolate_monopole_grav() 21 0.02718 0.02924 0.03052 0.88% Castro::computeTemp() 63 0.01965 0.02147 0.02731 0.79% Castro::construct_new_gravity_source() 10 0.02298 0.02445 0.02657 0.76% Castro::construct_old_gravity_source() 10 0.00687 0.01006 0.01725 0.50% Castro::initialize_do_advance() 10 0.01128 0.01556 0.0172 0.49% FabArray::Saxpy() 20 0.01049 0.01242 0.01533 0.44% Castro::initialize_advance() 10 0.005168 0.01042 0.01318 0.38% MultiFab::contains_nan() 20 0.009789 0.01121 0.01258 0.36% VisMF::Write(FabArray) 2 0.009068 0.009735 0.01222 0.35% Amr::writePlotFile() 2 0.007572 0.01032 0.01209 0.35% FabArray::setDomainBndry() 41 0.007235 0.009121 0.01016 0.29% Castro::initMFs() 1 0.006413 0.007013 0.008089 0.23% Castro::construct_new_source() 50 0.005407 0.00604 0.006429 0.19% main() 1 0.003681 0.003885 0.004113 0.12% Gravity::get_new_grav_vector() 11 0.00283 0.003349 0.003748 0.11% Amr::coarseTimeStep() 10 0.0008737 0.001576 0.00248 0.07% Gravity::get_old_grav_vector() 10 0.001714 0.001989 0.002384 0.07% Castro::finalize_do_advance() 10 0.0004359 0.0009315 0.001085 0.03% AmrLevel::FillPatch() 41 0.0006681 0.0007889 0.00093 0.03% Amr::timeStep() 10 0.0001607 0.0002269 0.0004592 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002724 0.0002886 0.0003251 0.01% Castro::do_advance_ctu() 10 0.0001224 0.0001472 0.0001782 0.01% Castro::clean_state() 62 0.0001414 0.0001558 0.0001723 0.00% StateDataPhysBCFunct::() 41 9.083e-05 0.0001053 0.0001393 0.00% FillPatchIterator::FillFromLevel0() 41 9.451e-05 0.0001014 0.000121 0.00% Castro::construct_old_source() 50 4.626e-05 7.652e-05 0.0001116 0.00% Castro::do_old_sources() 10 6.874e-05 8.66e-05 0.0001064 0.00% Castro::Castro() 1 5.552e-05 7.362e-05 9.176e-05 0.00% FabArray::ParallelCopy() 41 6.781e-05 7.966e-05 9.036e-05 0.00% FillPatchSingleLevel 41 6.454e-05 7.183e-05 7.961e-05 0.00% Amr::FinalizeInit() 1 3.669e-06 1.25e-05 7.053e-05 0.00% Castro::do_new_sources() 10 4.918e-05 5.526e-05 6.453e-05 0.00% Castro::subcycle_advance_ctu() 10 3.564e-05 5.079e-05 6.248e-05 0.00% Amr::defBaseLevel() 1 2.96e-05 4.992e-05 6.168e-05 0.00% Castro::apply_source_to_state() 20 3.331e-05 4.352e-05 4.937e-05 0.00% Castro::advance() 10 3.442e-05 4.248e-05 4.924e-05 0.00% Castro::construct_old_gravity() 10 3.033e-05 3.73e-05 4.302e-05 0.00% Castro::construct_new_gravity() 10 2.776e-05 3.261e-05 3.892e-05 0.00% Castro::expand_state() 10 2.047e-05 2.401e-05 2.642e-05 0.00% Castro::check_for_nan() 20 2.104e-05 2.27e-05 2.432e-05 0.00% Castro::post_timestep() 10 1.512e-05 1.649e-05 1.885e-05 0.00% Castro::computeNewDt() 9 7.382e-06 8.833e-06 1.178e-05 0.00% Castro::post_init() 1 8.167e-06 9.008e-06 9.703e-06 0.00% Amr::InitializeInit() 1 2.554e-06 3.254e-06 4.802e-06 0.00% Castro::computeInitialDt() 2 3.358e-06 4.073e-06 4.493e-06 0.00% Amr::init() 1 1.443e-06 1.866e-06 2.191e-06 0.00% Amr::initialInit() 1 1.352e-06 1.612e-06 1.808e-06 0.00% Other 261 0.01697 0.01902 0.02045 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.475 3.475 3.475 100.00% Amr::coarseTimeStep() 10 3.275 3.275 3.275 94.25% Amr::timeStep() 10 3.262 3.263 3.264 93.93% Castro::advance() 10 3.247 3.247 3.247 93.45% Castro::subcycle_advance_ctu() 10 3.174 3.178 3.193 91.89% Castro::do_advance_ctu() 10 3.174 3.177 3.193 91.89% Castro::construct_ctu_hydro_source() 10 2.434 2.437 2.442 70.27% Gravity::make_radial_gravity() 21 0.3057 0.3134 0.3238 9.32% AmrLevel::FillPatch() 41 0.1892 0.2062 0.228 6.56% Gravity::get_new_grav_vector() 11 0.2089 0.2098 0.2108 6.07% FillPatchIterator::Initialize 41 0.1581 0.1737 0.2038 5.86% Castro::construct_old_gravity() 10 0.1837 0.1903 0.1975 5.68% Gravity::get_old_grav_vector() 10 0.183 0.1896 0.1968 5.66% Castro::construct_new_gravity() 10 0.1866 0.1871 0.188 5.41% Amr::init() 1 0.1872 0.1874 0.1874 5.39% Amr::initialInit() 1 0.1726 0.1728 0.173 4.98% FillPatchIterator::FillFromLevel0() 41 0.1113 0.1328 0.1696 4.88% FillPatchSingleLevel 41 0.1112 0.1327 0.1695 4.88% Castro::initialize_do_advance() 10 0.155 0.1592 0.1664 4.79% check_for_negative_density() 10 0.05962 0.1004 0.1491 4.29% Amr::InitializeInit() 1 0.06866 0.1076 0.1462 4.21% Amr::defBaseLevel() 1 0.06866 0.1076 0.1462 4.21% FabArray::ParallelCopy() 41 0.07812 0.09983 0.1378 3.96% Castro::initData() 1 0.05266 0.09097 0.1284 3.69% Castro::clean_state() 62 0.1128 0.117 0.1231 3.54% Castro::expand_state() 10 0.1016 0.1067 0.1195 3.44% Castro::do_old_sources() 10 0.09905 0.106 0.1114 3.20% Castro::estTimeStep() 21 0.02929 0.06696 0.1077 3.10% Amr::FinalizeInit() 1 0.02663 0.06521 0.1041 3.00% FabArray::ParallelCopy_finish() 41 0.03889 0.05994 0.1019 2.93% amrex::Copy() 193 0.0617 0.07984 0.08766 2.52% Castro::computeInitialDt() 2 0.002199 0.04075 0.07972 2.29% Castro::computeTemp() 63 0.06455 0.06797 0.0741 2.13% Castro::initialize_advance() 10 0.05 0.06625 0.06977 2.01% FabArray::setVal() 143 0.05123 0.06385 0.06904 1.99% Castro::do_new_sources() 10 0.05912 0.06275 0.06672 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04491 0.0465 0.04825 1.39% Castro::reset_internal_energy(Fab) 1008 0.04462 0.04621 0.04797 1.38% Castro::normalize_species() 62 0.04134 0.04253 0.04465 1.28% FabArray::ParallelCopy_nowait() 41 0.03585 0.03981 0.04263 1.23% StateDataPhysBCFunct::() 41 0.03078 0.0328 0.03478 1.00% StateData::FillBoundary(geom) 41 0.03067 0.0327 0.03467 1.00% Castro::construct_new_source() 50 0.02889 0.03049 0.03275 0.94% Gravity::interpolate_monopole_grav() 21 0.02718 0.02924 0.03052 0.88% Castro::construct_new_gravity_source() 10 0.02298 0.02445 0.02657 0.76% Castro::post_init() 1 0.02375 0.02398 0.02409 0.69% Amr::writePlotFile() 2 0.0226 0.02272 0.023 0.66% Castro::finalize_do_advance() 10 0.01367 0.01812 0.02182 0.63% Castro::construct_old_source() 50 0.006916 0.01014 0.01737 0.50% Castro::construct_old_gravity_source() 10 0.00687 0.01006 0.01725 0.50% Castro::post_timestep() 10 0.01551 0.016 0.01678 0.48% Castro::apply_source_to_state() 20 0.01052 0.01246 0.01538 0.44% FabArray::Saxpy() 20 0.01049 0.01242 0.01533 0.44% Castro::check_for_nan() 20 0.009813 0.01124 0.0126 0.36% MultiFab::contains_nan() 20 0.009789 0.01121 0.01258 0.36% VisMF::Write(FabArray) 2 0.009068 0.009735 0.01222 0.35% Castro::Castro() 1 0.01021 0.01078 0.01172 0.34% FabArray::setDomainBndry() 41 0.007235 0.009121 0.01016 0.29% Castro::computeNewDt() 9 0.009008 0.00903 0.009042 0.26% Castro::initMFs() 1 0.006413 0.007013 0.008089 0.23% Other 261 0.02688 0.02968 0.0319 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 37 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-13-g5dedac0b7d70) finalized