Initializing AMReX (24.08-17-g8535675d4aef)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-17-g8535675d4aef) initialized Starting run at 05:37:28 UTC on 2024-08-15. Successfully read inputs file ... Castro git describe: 24.08-3-g15327db6b AMReX git describe: 24.08-17-g8535675d4 Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014719151 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343318885 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.359490898 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.327114221 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.326985225 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.37814657 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.31547998 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308491003 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.307649727 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308595111 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.308690284 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00796073 seconds Ending run at 05:37:31 UTC on 2024-08-15. Run time = 3.501415749 Run time without initialization = 3.296662955 Average number of zones advanced per microsecond: 0.795 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.501 ... 3.501 ... 3.501 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2696 2.3112 2.3867 68.16% Gravity::make_radial_gravity() 21 0.2905 0.2974 0.3122 8.92% check_for_negative_density() 10 0.03103 0.1127 0.1563 4.46% Castro::initData() 1 0.04865 0.08843 0.1417 4.05% Castro::estTimeStep() 21 0.02356 0.08208 0.1236 3.53% FabArray::ParallelCopy_finish() 41 0.04284 0.05968 0.09883 2.82% amrex::Copy() 193 0.0674 0.08145 0.09284 2.65% FabArray::setVal() 143 0.04988 0.06463 0.07137 2.04% Castro::reset_internal_energy(Fab) 1008 0.04562 0.04701 0.04929 1.41% Castro::normalize_species() 62 0.04072 0.04179 0.04463 1.27% FabArray::ParallelCopy_nowait() 41 0.03523 0.03956 0.04081 1.17% FillPatchIterator::Initialize 41 0.02722 0.03164 0.03414 0.98% StateData::FillBoundary(geom) 41 0.0304 0.03214 0.03383 0.97% Gravity::interpolate_monopole_grav() 21 0.02784 0.02967 0.03131 0.89% Castro::construct_new_gravity_source() 10 0.02311 0.0245 0.02665 0.76% Castro::computeTemp() 63 0.02026 0.02087 0.02155 0.62% Castro::initialize_do_advance() 10 0.01139 0.01584 0.01726 0.49% MultiFab::contains_nan() 20 0.009796 0.01126 0.01478 0.42% Castro::initialize_advance() 10 0.005217 0.01064 0.01363 0.39% FabArray::Saxpy() 20 0.01055 0.01215 0.01316 0.38% VisMF::Write(FabArray) 2 0.008927 0.009769 0.01254 0.36% Amr::writePlotFile() 2 0.007629 0.01054 0.01249 0.36% FabArray::setDomainBndry() 41 0.007618 0.009533 0.01188 0.34% Castro::construct_old_gravity_source() 10 0.006679 0.008859 0.009409 0.27% Castro::initMFs() 1 0.00647 0.007109 0.007873 0.22% Castro::construct_new_source() 50 0.005796 0.00619 0.006554 0.19% main() 1 0.003806 0.00398 0.004072 0.12% Gravity::get_new_grav_vector() 11 0.002666 0.003316 0.003611 0.10% Amr::coarseTimeStep() 10 0.0009625 0.00206 0.002594 0.07% Gravity::get_old_grav_vector() 10 0.00157 0.002007 0.002496 0.07% Castro::finalize_do_advance() 10 0.0004856 0.001035 0.001432 0.04% AmrLevel::FillPatch() 41 0.00083 0.0009254 0.001152 0.03% Amr::timeStep() 10 0.0001811 0.0002127 0.0003618 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002766 0.0002913 0.0003091 0.01% Castro::clean_state() 62 0.0001415 0.0001583 0.0001715 0.00% Castro::do_advance_ctu() 10 0.0001253 0.0001474 0.0001601 0.00% StateDataPhysBCFunct::() 41 9.206e-05 0.0001077 0.0001515 0.00% FillPatchIterator::FillFromLevel0() 41 9.453e-05 0.0001118 0.0001246 0.00% Amr::FinalizeInit() 1 3.309e-06 1.602e-05 0.0001018 0.00% FillPatchSingleLevel 41 6.733e-05 7.964e-05 0.0001018 0.00% Castro::do_old_sources() 10 5.944e-05 8.266e-05 9.096e-05 0.00% FabArray::ParallelCopy() 41 6.39e-05 7.876e-05 8.657e-05 0.00% Castro::Castro() 1 6.671e-05 7.22e-05 7.613e-05 0.00% Castro::construct_old_source() 50 4.726e-05 6.626e-05 7.401e-05 0.00% Castro::construct_old_gravity() 10 3.311e-05 4.276e-05 6.195e-05 0.00% Castro::do_new_sources() 10 4.919e-05 5.697e-05 6.005e-05 0.00% Castro::advance() 10 3.738e-05 4.547e-05 5.71e-05 0.00% Castro::subcycle_advance_ctu() 10 4.547e-05 5.116e-05 5.638e-05 0.00% Castro::check_for_nan() 20 2.102e-05 2.838e-05 5.254e-05 0.00% Castro::apply_source_to_state() 20 3.578e-05 4.502e-05 5.047e-05 0.00% Amr::defBaseLevel() 1 3.221e-05 3.977e-05 4.462e-05 0.00% Castro::construct_new_gravity() 10 2.84e-05 3.354e-05 4.34e-05 0.00% Castro::expand_state() 10 2.033e-05 2.467e-05 3.193e-05 0.00% Castro::post_timestep() 10 1.519e-05 1.65e-05 1.815e-05 0.00% Castro::computeNewDt() 9 8.47e-06 9.359e-06 1.067e-05 0.00% Castro::post_init() 1 8.159e-06 9.317e-06 1.055e-05 0.00% Amr::InitializeInit() 1 2.71e-06 3.411e-06 5.296e-06 0.00% Castro::computeInitialDt() 2 3.166e-06 3.533e-06 4.017e-06 0.00% Amr::init() 1 1.768e-06 2.192e-06 2.577e-06 0.00% Amr::initialInit() 1 1.369e-06 1.66e-06 2.067e-06 0.00% Other 261 0.01737 0.01956 0.02123 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.501 3.501 3.501 100.00% Amr::coarseTimeStep() 10 3.285 3.285 3.285 93.81% Amr::timeStep() 10 3.272 3.273 3.274 93.49% Castro::advance() 10 3.256 3.256 3.257 93.01% Castro::subcycle_advance_ctu() 10 3.181 3.186 3.202 91.44% Castro::do_advance_ctu() 10 3.181 3.186 3.202 91.44% Castro::construct_ctu_hydro_source() 10 2.435 2.445 2.45 69.97% Gravity::make_radial_gravity() 21 0.3068 0.3144 0.3253 9.29% AmrLevel::FillPatch() 41 0.1836 0.2053 0.2314 6.61% Gravity::get_new_grav_vector() 11 0.2046 0.2062 0.2075 5.93% Castro::construct_old_gravity() 10 0.1878 0.1946 0.2048 5.85% Amr::init() 1 0.2042 0.2044 0.2044 5.84% Gravity::get_old_grav_vector() 10 0.1871 0.194 0.2042 5.83% FillPatchIterator::Initialize 41 0.1541 0.173 0.2019 5.77% Amr::initialInit() 1 0.1891 0.1895 0.1896 5.42% Castro::construct_new_gravity() 10 0.183 0.1839 0.1845 5.27% Castro::initialize_do_advance() 10 0.1523 0.1611 0.1676 4.79% FillPatchIterator::FillFromLevel0() 41 0.1165 0.1318 0.166 4.74% FillPatchSingleLevel 41 0.1164 0.1317 0.1659 4.74% Amr::InitializeInit() 1 0.06982 0.1092 0.1633 4.66% Amr::defBaseLevel() 1 0.06982 0.1092 0.1633 4.66% check_for_negative_density() 10 0.03103 0.1127 0.1563 4.46% Castro::initData() 1 0.05231 0.09214 0.1451 4.14% FabArray::ParallelCopy() 41 0.08321 0.09939 0.1342 3.83% Castro::estTimeStep() 21 0.02356 0.08208 0.1236 3.53% Castro::clean_state() 62 0.1137 0.1166 0.1206 3.44% Castro::expand_state() 10 0.09785 0.1077 0.12 3.43% Amr::FinalizeInit() 1 0.02613 0.08026 0.1195 3.41% Castro::do_old_sources() 10 0.09309 0.1019 0.1135 3.24% FabArray::ParallelCopy_finish() 41 0.04284 0.05968 0.09883 2.82% Castro::computeInitialDt() 2 0.002254 0.05635 0.09561 2.73% amrex::Copy() 193 0.0674 0.08145 0.09284 2.65% Castro::initialize_advance() 10 0.05095 0.06735 0.07178 2.05% FabArray::setVal() 143 0.04988 0.06463 0.07137 2.04% Castro::computeTemp() 63 0.06638 0.06817 0.07092 2.03% Castro::do_new_sources() 10 0.05973 0.06349 0.06893 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04591 0.0473 0.04959 1.42% Castro::reset_internal_energy(Fab) 1008 0.04562 0.04701 0.04929 1.41% Castro::normalize_species() 62 0.04072 0.04179 0.04463 1.27% FabArray::ParallelCopy_nowait() 41 0.03531 0.03964 0.04089 1.17% StateDataPhysBCFunct::() 41 0.03056 0.03225 0.03392 0.97% StateData::FillBoundary(geom) 41 0.0304 0.03214 0.03383 0.97% Castro::construct_new_source() 50 0.0292 0.03069 0.03315 0.95% Gravity::interpolate_monopole_grav() 21 0.02784 0.02967 0.03131 0.89% Castro::construct_new_gravity_source() 10 0.02311 0.0245 0.02665 0.76% Castro::post_init() 1 0.02325 0.02353 0.02367 0.68% Amr::writePlotFile() 2 0.02279 0.02293 0.02334 0.67% Castro::finalize_do_advance() 10 0.01273 0.0179 0.02086 0.60% Castro::post_timestep() 10 0.01546 0.01592 0.01645 0.47% Castro::check_for_nan() 20 0.009821 0.01129 0.01483 0.42% MultiFab::contains_nan() 20 0.009796 0.01126 0.01478 0.42% Castro::apply_source_to_state() 20 0.01059 0.0122 0.0132 0.38% FabArray::Saxpy() 20 0.01055 0.01215 0.01316 0.38% VisMF::Write(FabArray) 2 0.008927 0.009769 0.01254 0.36% FabArray::setDomainBndry() 41 0.007618 0.009533 0.01188 0.34% Castro::Castro() 1 0.009666 0.01089 0.01188 0.34% Castro::construct_old_source() 50 0.006726 0.008926 0.009481 0.27% Castro::construct_old_gravity_source() 10 0.006679 0.008859 0.009409 0.27% Castro::computeNewDt() 9 0.008872 0.00888 0.008886 0.25% Castro::initMFs() 1 0.00647 0.007109 0.007873 0.22% Other 261 0.02733 0.03044 0.03296 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 36 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-17-g8535675d4aef) finalized