Initializing AMReX (24.08-19-gd9919c92db09)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.08-19-gd9919c92db09) initialized Starting run at 05:22:38 UTC on 2024-08-16. Successfully read inputs file ... Castro git describe: 24.08-3-g15327db6b AMReX git describe: 24.08-19-gd9919c92d Microphysics git describe: 24.08-2-g8ce3375a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014328581 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.357094794 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.327414928 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325634009 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.354286224 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.370130799 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.315752031 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308391688 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.308708897 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308685823 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.331124201 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00841223 seconds Ending run at 05:22:42 UTC on 2024-08-16. Run time = 3.511513017 Run time without initialization = 3.321136959 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.511 ... 3.511 ... 3.512 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2895 2.3261 2.3802 67.78% Gravity::make_radial_gravity() 21 0.2929 0.3007 0.3104 8.84% check_for_negative_density() 10 0.06861 0.1229 0.1607 4.58% Castro::initData() 1 0.04789 0.0884 0.127 3.62% Castro::estTimeStep() 21 0.03031 0.06717 0.1084 3.09% FabArray::ParallelCopy_finish() 41 0.03611 0.05969 0.1014 2.89% amrex::Copy() 193 0.06841 0.08127 0.09195 2.62% FabArray::setVal() 143 0.05109 0.06391 0.07132 2.03% Castro::reset_internal_energy(Fab) 1008 0.04299 0.04591 0.04784 1.36% Castro::normalize_species() 62 0.04163 0.04287 0.04411 1.26% FabArray::ParallelCopy_nowait() 41 0.03483 0.03913 0.04029 1.15% FillPatchIterator::Initialize 41 0.02689 0.03181 0.03502 1.00% StateData::FillBoundary(geom) 41 0.03062 0.03201 0.03356 0.96% Gravity::interpolate_monopole_grav() 21 0.02787 0.02983 0.0322 0.92% Castro::construct_new_gravity_source() 10 0.02311 0.02436 0.02587 0.74% Castro::computeTemp() 63 0.01972 0.02055 0.02125 0.61% Castro::initialize_do_advance() 10 0.01154 0.01535 0.01683 0.48% Castro::initialize_advance() 10 0.005242 0.01034 0.01313 0.37% FabArray::Saxpy() 20 0.01034 0.01173 0.01269 0.36% VisMF::Write(FabArray) 2 0.009226 0.009763 0.01261 0.36% FabArray::setDomainBndry() 41 0.008032 0.009956 0.01215 0.35% Amr::writePlotFile() 2 0.007407 0.01038 0.01158 0.33% MultiFab::contains_nan() 20 0.009513 0.01051 0.01152 0.33% Castro::construct_old_gravity_source() 10 0.006365 0.008516 0.009291 0.26% Castro::enforce_min_density() 62 0.007189 0.007428 0.007676 0.22% Castro::construct_new_source() 50 0.005699 0.006131 0.00654 0.19% main() 1 0.003654 0.00428 0.004699 0.13% Gravity::get_new_grav_vector() 11 0.002831 0.003309 0.003753 0.11% Gravity::get_old_grav_vector() 10 0.00157 0.001993 0.002532 0.07% Amr::coarseTimeStep() 10 0.0009397 0.001787 0.002188 0.06% Castro::finalize_do_advance() 10 0.0004874 0.0009721 0.001193 0.03% AmrLevel::FillPatch() 41 0.0007144 0.0009251 0.0009979 0.03% Amr::timeStep() 10 0.0001685 0.0002295 0.0004835 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002928 0.0002976 0.0003028 0.01% Castro::clean_state() 62 0.0001347 0.0001599 0.0001837 0.01% Castro::do_advance_ctu() 10 0.0001185 0.0001433 0.0001629 0.00% StateDataPhysBCFunct::() 41 9.514e-05 0.0001077 0.0001473 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001017 0.0001111 0.0001263 0.00% Castro::do_old_sources() 10 6.115e-05 8.361e-05 0.0001092 0.00% FillPatchSingleLevel 41 6.667e-05 7.736e-05 9.332e-05 0.00% FabArray::ParallelCopy() 41 7.325e-05 7.94e-05 9.221e-05 0.00% Castro::construct_old_source() 50 4.557e-05 7.058e-05 9.083e-05 0.00% Castro::Castro() 1 5.886e-05 7.22e-05 8.785e-05 0.00% Amr::FinalizeInit() 1 2.931e-06 1.344e-05 7.75e-05 0.00% Castro::do_new_sources() 10 4.866e-05 5.78e-05 6.49e-05 0.00% Amr::defBaseLevel() 1 3.455e-05 5.16e-05 5.941e-05 0.00% Castro::subcycle_advance_ctu() 10 3.99e-05 5.008e-05 5.822e-05 0.00% Castro::advance() 10 3.826e-05 4.436e-05 5.646e-05 0.00% Castro::apply_source_to_state() 20 3.494e-05 4.651e-05 5.072e-05 0.00% Castro::construct_old_gravity() 10 3.494e-05 3.935e-05 4.382e-05 0.00% Castro::construct_new_gravity() 10 2.882e-05 3.383e-05 3.784e-05 0.00% Castro::check_for_nan() 20 2.287e-05 2.415e-05 2.684e-05 0.00% Castro::expand_state() 10 2.022e-05 2.304e-05 2.559e-05 0.00% Castro::post_timestep() 10 1.39e-05 1.743e-05 2.114e-05 0.00% Castro::post_init() 1 7.734e-06 1.122e-05 1.759e-05 0.00% Castro::computeNewDt() 9 8.858e-06 9.553e-06 1.062e-05 0.00% Amr::initialInit() 1 1.454e-06 2.609e-06 8.336e-06 0.00% Amr::InitializeInit() 1 2.831e-06 3.499e-06 6.544e-06 0.00% Castro::computeInitialDt() 2 3.112e-06 3.827e-06 4.458e-06 0.00% Amr::init() 1 1.758e-06 2.134e-06 2.962e-06 0.00% Other 200 0.01629 0.01925 0.02073 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.511 3.511 3.512 100.00% Amr::coarseTimeStep() 10 3.308 3.308 3.308 94.21% Amr::timeStep() 10 3.296 3.296 3.297 93.89% Castro::advance() 10 3.279 3.28 3.28 93.41% Castro::subcycle_advance_ctu() 10 3.205 3.21 3.224 91.82% Castro::do_advance_ctu() 10 3.205 3.21 3.224 91.82% Castro::construct_ctu_hydro_source() 10 2.467 2.47 2.474 70.45% Gravity::make_radial_gravity() 21 0.3094 0.3172 0.324 9.23% AmrLevel::FillPatch() 41 0.1895 0.2054 0.2335 6.65% Gravity::get_new_grav_vector() 11 0.2082 0.2096 0.2111 6.01% FillPatchIterator::Initialize 41 0.1575 0.1731 0.2047 5.83% Castro::construct_old_gravity() 10 0.1896 0.1956 0.2013 5.73% Gravity::get_old_grav_vector() 10 0.1888 0.195 0.2007 5.71% Amr::init() 1 0.1897 0.19 0.19 5.41% Castro::construct_new_gravity() 10 0.1861 0.1871 0.1883 5.36% Amr::initialInit() 1 0.175 0.1754 0.1755 5.00% FillPatchIterator::FillFromLevel0() 41 0.1104 0.1313 0.1692 4.82% FillPatchSingleLevel 41 0.1103 0.1312 0.1691 4.82% Castro::initialize_do_advance() 10 0.1566 0.1599 0.1682 4.79% check_for_negative_density() 10 0.06861 0.1229 0.1607 4.58% Amr::InitializeInit() 1 0.06902 0.1091 0.149 4.24% Amr::defBaseLevel() 1 0.06902 0.1091 0.1489 4.24% FabArray::ParallelCopy() 41 0.07657 0.09898 0.1363 3.88% Castro::initData() 1 0.05159 0.09205 0.1312 3.74% Castro::expand_state() 10 0.1033 0.1082 0.1202 3.42% Castro::clean_state() 62 0.1133 0.1164 0.1184 3.37% Castro::do_old_sources() 10 0.09052 0.09942 0.1086 3.09% Castro::estTimeStep() 21 0.03031 0.06717 0.1084 3.09% Amr::FinalizeInit() 1 0.02607 0.06626 0.1064 3.03% FabArray::ParallelCopy_finish() 41 0.03611 0.05969 0.1014 2.89% amrex::Copy() 193 0.06841 0.08127 0.09195 2.62% Castro::computeInitialDt() 2 0.0023 0.04211 0.08227 2.34% FabArray::setVal() 143 0.05109 0.06391 0.07132 2.03% Castro::initialize_advance() 10 0.05182 0.06614 0.07126 2.03% Castro::computeTemp() 63 0.063 0.06675 0.06925 1.97% Castro::do_new_sources() 10 0.05982 0.0629 0.0671 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04328 0.04621 0.04813 1.37% Castro::reset_internal_energy(Fab) 1008 0.04299 0.04591 0.04784 1.36% Castro::normalize_species() 62 0.04163 0.04287 0.04411 1.26% FabArray::ParallelCopy_nowait() 41 0.03491 0.03921 0.04037 1.15% StateDataPhysBCFunct::() 41 0.03072 0.03212 0.03366 0.96% StateData::FillBoundary(geom) 41 0.03062 0.03201 0.03356 0.96% Castro::construct_new_source() 50 0.02907 0.03049 0.03241 0.92% Gravity::interpolate_monopole_grav() 21 0.02787 0.02983 0.0322 0.92% Castro::construct_new_gravity_source() 10 0.02311 0.02436 0.02587 0.74% Castro::post_init() 1 0.02341 0.02377 0.0239 0.68% Amr::writePlotFile() 2 0.02298 0.0231 0.02348 0.67% Castro::finalize_do_advance() 10 0.01268 0.017 0.02015 0.57% Castro::post_timestep() 10 0.01574 0.01612 0.01686 0.48% Castro::apply_source_to_state() 20 0.01038 0.01177 0.01274 0.36% FabArray::Saxpy() 20 0.01034 0.01173 0.01269 0.36% VisMF::Write(FabArray) 2 0.009226 0.009763 0.01261 0.36% FabArray::setDomainBndry() 41 0.008032 0.009956 0.01215 0.35% Castro::Castro() 1 0.009171 0.01086 0.01156 0.33% Castro::check_for_nan() 20 0.009537 0.01053 0.01155 0.33% MultiFab::contains_nan() 20 0.009513 0.01051 0.01152 0.33% Castro::construct_old_source() 50 0.006411 0.008587 0.009382 0.27% Castro::construct_old_gravity_source() 10 0.006365 0.008516 0.009291 0.26% Castro::computeNewDt() 9 0.009022 0.009042 0.009055 0.26% Castro::enforce_min_density() 62 0.007189 0.007428 0.007676 0.22% Other 200 0.0262 0.03017 0.03226 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.08-19-gd9919c92db09) finalized